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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051404 ID=TCONS_00051404|Name=TCONS_00051404|organism=Clytia hemisphaerica|type=transcript|length=1870bpRun BLAST on NCBI protein sequence of TCONS_00051404-protein >TCONS_00051404-protein ID=TCONS_00051404-protein|Name=TCONS_00051404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp MSEQTGQYDLDTSGGIMEEIQALIAPPQSEESKRRQAAREAALNRRTIRTRun BLAST on NCBI transcript from alignment at scaffold_201:210953..223495- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051404 ID=TCONS_00051404|Name=TCONS_00051404|organism=Clytia hemisphaerica|type=transcript|length=12543bp|location=Sequence derived from alignment at scaffold_201:210953..223495- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_201:210953..223495- >TCONS_00051404 ID=TCONS_00051404|Name=TCONS_00051404|organism=Clytia hemisphaerica|type=CDS|length=18324bp|location=Sequence derived from alignment at scaffold_201:210953..223495- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00051404 vs. Swiss-Prot (Human)
Match: PHF12 (PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=1 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 1.039e-36 Identity = 87/240 (36.25%), Postives = 123/240 (51.25%), Query Frame = 1
Query: 478 PFEQLTAMFRHKNPREFQLPAQMQQFAVMPGDRKRR-----TPVQAKKKEDEAQ---------RLCFICSKTSRIGDLIYCDFCPCVYHRDCLMPPLAQEPIGLWMCPNHPENFHPGIRTPKYSQRVQVVEEMRSNINHNTIKLQFFNRAKKERILMNREEHQPKKRRTCNVPDIVKAQYENPPAEMVP----DQYGYHVNQPLEPHMRPIT---LPTTDEKEQWLKSVVDLQCAIAGSL 1134
PFE L A +NP +FQLP ++ +PG KRR T KK + E ++CF C+++ R+ LI CD+CP ++H DCL PPL P+G WMCPNH E+ + S R QV + + ++ + +K+ F NR K+ NR Q KRR+ VPD +K+QY+ PP + P D P E M + L T E+++WL SVV LQC+I L
Sbjct: 209 PFELLIAAAMERNPTQFQLPNELTCTTALPGSSKRRRKEETTGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVVLNQKNMTLSNRCQVFDRFQDTVSQHVVKVDFLNRIHKKHP-PNRRVLQSVKRRSLKVPDAIKSQYQFPPPLIAPAAIRDGELICNGIPEESQMHLLNSEHLATQAEQQEWLCSVVALQCSILKHL 447 HSP 2 Score: 129.413 bits (324), Expect = 4.371e-31 Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 1
Query: 58 QKMSEQTGQYDLDTSGGIMEEIQALIAPPQSEESKRRQAAREAALNRRTIRTVNRDSCDACKEGGDLLCCDTCPTSLHLQCCDPPLEEEDVLTGDWVCVEC 360
+KM +T YDLDTSGG+ME+IQAL+APP+++E+++R E RR+ R N DSCD+CKEGGDLLCCD CP + HLQCC+PPL EE + G+W+C C
Sbjct: 3 EKMETKTIVYDLDTSGGLMEQIQALLAPPKTDEAEKRSRKPEKE-PRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRC 102 The following BLAST results are available for this feature:
BLAST of TCONS_00051404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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