TCONS_00051407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051407
Unique NameTCONS_00051407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051407 ID=TCONS_00051407|Name=TCONS_00051407|organism=Clytia hemisphaerica|type=transcript|length=639bp
GCTTGATGGTTACGAATTGAGCTGGCAGCATATTATCGCAGTCTATGAGC
AAGATCTCATCCCAGATTACTAAAGACGAAGATGGTGTGGCTATGAGGAA
GTTGCACAAGCTAAGCAATGAACATATTCATTTGTCACAAAGATTAAGAA
TGAGAGTGAACCTTGCAGCCCAGGTTTTGAGCAACAGCGTTGCACTAGCA
CTTGATAAACAGAATCTTCAGTCCACAACCTCGACTCAGAAATACATTCG
AAAAATGGATCGATTCTTTGATTGTTTAAACGGTTGGTCACTCTTCATTG
GACAGAGAACAAACAAAGACGATTTAAAACCTTATTTTGAAGTTACAGAC
AAAAGATTTAAGTTTCTCGAAGATGAGTTTTGGATTTCTTTTCGGATTGG
GAAAAACAACTCGAAAACCTGAAAGGTGTTCCTGAAGAGGTCAAACCAAA
ACTGATGATCAGCAGCCAAACAACCAATGGAATAAGAACAACAGGTAAGA
AACGTTGGATAAGATTGACTTTGATATCTTGTATGTAGGTAAAAACATtt
cctgatattgtgatgttaTTTTTACTTTGTGAGTATCATAGTGAGTATCA
ACCAATCATCTTTCGTATTTTAGATAGTCTATTCCATTG
Run BLAST on NCBI

protein sequence of TCONS_00051407-protein

>TCONS_00051407-protein ID=TCONS_00051407-protein|Name=TCONS_00051407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MSKISSQITKDEDGVAMRKLHKLSNEHIHLSQRLRMRVNLAAQVLSNSVA
LALDKQNLQSTTSTQKYIRKMDRFFDCLNGWSLFIGQRTNKDDLKPYFEV
TDKRFKFLEDEFWISFRIGKNNSKT
Run BLAST on NCBI

transcript from alignment at scaffold_201:303337..304565-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051407 ID=TCONS_00051407|Name=TCONS_00051407|organism=Clytia hemisphaerica|type=transcript|length=1229bp|location=Sequence derived from alignment at scaffold_201:303337..304565- (Clytia hemisphaerica)
GCTTGATGGTTACGAATTGAGCTGGCAGCATATTATCGCAGTCTATGAGC
AAGATCTCATCCCAGATTACTAAAGACGAAGATGGTGTGGCTATGAGGAA
GTTGCACAAGCTAAGCAATGAACATATTCATTTGTCACAAAGATTAAGAA
TGAGAGTGAACCTTGCAGCCCAGGTAAGTCATAAATTTAAAATTTTGGGA
GGATATACTTATTAGCGTTGATCGATTCAGAGTCTTCTCATTTTTAGTGG
AATCTTAAAGTATCTTGAAGTATTATTTATAAACTCAAGCCTTACTTCAT
TCAGATATTATTGACTTTGTTTGTGATAAACTTTCATCCGAAACAGGATC
TTTTTATATGGGAATTAAATCTCTTGTGTATAATACTAAGTTAAAAAGTT
GTACAGGTTTTGAGCAACAGCGTTGCACTAGCACTTGATAAACAGAATCT
TCAGTCCACAACCTCGACTCAGAAATACATTCGAAAAATGGATCGATTCT
TTGATTGTTTAAACGGTTGGTCACTCTTCATTGGACAGAGAACAAACAAA
GACGATTTAAAACCTTATTTTGAAGTTACAGACAAAAGATTTAAGGTTTA
CAATGGCTATTAATTGTATTTTTATATGATATTCCTGATATTCCTGATTG
CTTATTTTCTTAGCTATCATAAAAATGTCATCATTTTTTTATTTAGGCTA
TTACTTAAGGAATTAAATTTTGTGGTTTTTGCGGATTTATGCCCAAACCG
CAAAATTAAGTTCCCGCAAAATTTTTCAAATGCGAAAAACAAAGGCCGAA
TAATTCACAGTACAGCTCTAATTTTCTTTCAAGTGAGAAATCCGCAAAAT
TAAGTTCCCGCAAATATTTAATATTAAATTTTGAACTGCAAACCGCAAAA
ATTAGTTCCCGCAAAAAATAGTTCCCTTAAGGTAAGTTTCTCTGTATTTT
AGTTTCTCGAAGATGAGTTTTGGATTTCTTTTCGGATTGGGAAAAACAAC
TCGAAAACCTGAAAGGTGTTCCTGAAGAGGTCAAACCAAAACTGATGATC
AGCAGCCAAACAACCAATGGAATAAGAACAACAGGTAAGAAACGTTGGAT
AAGATTGACTTTGATATCTTGTATGTAGGTAAAAACATTTCCTGATATTG
TGATGTTATTTTTACTTTGTGAGTATCATAGTGAGTATCAACCAATCATC
TTTCGTATTTTAGATAGTCTATTCCATTG

Coding sequence (CDS) from alignment at scaffold_201:303337..304565-

>TCONS_00051407 ID=TCONS_00051407|Name=TCONS_00051407|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_201:303337..304565- (Clytia hemisphaerica)
TTTCTCGAAGATGAGTTTTGGATTTCTTTTCGGATTGGGAAAAACAACTC
GAAAACCTGAGTTTTGAGCAACAGCGTTGCACTAGCACTTGATAAACAGA
ATCTTCAGTCCACAACCTCGACTCAGAAATACATTCGAAAAATGGATCGA
TTCTTTGATTGTTTAAACGGTTGGTCACTCTTCATTGGACAGAGAACAAA
CAAAGACGATTTAAAACCTTATTTTGAAGTTACAGACAAAAGATTTAAGA
TGAGCAAGATCTCATCCCAGATTACTAAAGACGAAGATGGTGTGGCTATG
AGGAAGTTGCACAAGCTAAGCAATGAACATATTCATTTGTCACAAAGATT
AAGAATGAGAGTGAACCTTGCAGCCCAGTTTCTCGAAGATGAGTTTTGGA
TTTCTTTTCGGATTGGGAAAAACAACTCGAAAACCTGAGTTTTGAGCAAC
AGCGTTGCACTAGCACTTGATAAACAGAATCTTCAGTCCACAACCTCGAC
TCAGAAATACATTCGAAAAATGGATCGATTCTTTGATTGTTTAAACGGTT
GGTCACTCTTCATTGGACAGAGAACAAACAAAGACGATTTAAAACCTTAT
TTTGAAGTTACAGACAAAAGATTTAAGATGAGCAAGATCTCATCCCAGAT
TACTAAAGACGAAGATGGTGTGGCTATGAGGAAGTTGCACAAGCTAAGCA
ATGAACATATTCATTTGTCACAAAGATTAAGAATGAGAGTGAACCTTGCA
GCCCAGTTTCTCGAAGATGAGTTTTGGATTTCTTTTCGGATTGGGAAAAA
CAACTCGAAAACCTGAGTTTTGAGCAACAGCGTTGCACTAGCACTTGATA
AACAGAATCTTCAGTCCACAACCTCGACTCAGAAATACATTCGAAAAATG
GATCGATTCTTTGATTGTTTAAACGGTTGGTCACTCTTCATTGGACAGAG
AACAAACAAAGACGATTTAAAACCTTATTTTGAAGTTACAGACAAAAGAT
TTAAGATGAGCAAGATCTCATCCCAGATTACTAAAGACGAAGATGGTGTG
GCTATGAGGAAGTTGCACAAGCTAAGCAATGAACATATTCATTTGTCACA
AAGATTAAGAATGAGAGTGAACCTTGCAGCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032578XLOC_032578Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051407-proteinTCONS_00051407-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051407-exon-scaffold_201-1575043694:304393..304565TCONS_00051407-exon-scaffold_201-1575043694:304393..304565Clytia hemisphaericaexon
TCONS_00051407-exon-scaffold_201-1575043694:303971..304159TCONS_00051407-exon-scaffold_201-1575043694:303971..304159Clytia hemisphaericaexon
TCONS_00051407-exon-scaffold_201-1575043694:303337..303613TCONS_00051407-exon-scaffold_201-1575043694:303337..303613Clytia hemisphaericaexon
TCONS_00051407-exon-scaffold_201-1510915933:304393..304565TCONS_00051407-exon-scaffold_201-1510915933:304393..304565Clytia hemisphaericaexon
TCONS_00051407-exon-scaffold_201-1510915933:303971..304159TCONS_00051407-exon-scaffold_201-1510915933:303971..304159Clytia hemisphaericaexon
TCONS_00051407-exon-scaffold_201-1510915933:303337..303613TCONS_00051407-exon-scaffold_201-1510915933:303337..303613Clytia hemisphaericaexon
TCONS_00051407-exon-scaffold_201-1491911889:304393..304565TCONS_00051407-exon-scaffold_201-1491911889:304393..304565Clytia hemisphaericaexon
TCONS_00051407-exon-scaffold_201-1491911889:303971..304159TCONS_00051407-exon-scaffold_201-1491911889:303971..304159Clytia hemisphaericaexon
TCONS_00051407-exon-scaffold_201-1491911889:303337..303613TCONS_00051407-exon-scaffold_201-1491911889:303337..303613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:303337..304565 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.845069	1.3137	0.373672	0.456974	6.70301	4.41559	3.0241	3.31029	2.41501	4.20713	1.91755	3.5373	2.14002	1.13971	3.31909	3.16745	3.67446	2.85644	2.28036	2.75334	4.44204	4.20227	2.32465	2.15013	0.797251	0.474352	5.02736	3.85428	0.549454	0.83971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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