TCONS_00051422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051422
Unique NameTCONS_00051422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051422 ID=TCONS_00051422|Name=TCONS_00051422|organism=Clytia hemisphaerica|type=transcript|length=851bp
CACAACTCAAGAGAGAAGACAAGTACAGAGACTTGAACAAGAAATAAAGA
ATTGATACACGAAAATGGGTATCTTTAGCAAGAAAAACACAATCGAGTTC
TCTGCACAACAATCATACGACAGTGTCGATGGTGGTACACAACGCAACAA
GATCCTCACCAACATCCAGCGTGAAGCCCGCGCGGCCGCGATATGGCTTT
CCAAACAGATAAAACAGTACAGCGAGGACAACTTTAAACGTCAGAAAACC
TCTTTCTTCCATCGACTCATCACCAAGAGACCAGCCTACAAAACACCact
ggaattccagttattcgAATTGCCGCCAGATGACGACATGCAACGGACTG
ACGAACGTCGGCTGGAAATTATCCGTCGTATTTTCGAGCAGGTTGAAAAG
ATTTTACTCGTCCTCTACAATGGTGGCGCCGGTGAGAATGTAGCTAATGA
AATCTTAGTGCGACTTGGAAATTTAACCAATCCTCACCATTCAATGACCA
AACTTAAGCTTGTCATGTCAATAAAACCTGATGCCGTCGTTTGGAACGTC
ACAGATCAAGATTTGCCCAAGTTAGAATACACTGCGGACAACTTGGACCC
AAAACGCTGGCCAACTCTTAGAGACACCTCCAAAATCCCGAAGGACCAAA
TCACGGACAAAACGAGAACAAAGTTTATTATGCTGACCATTATTTCAGAA
CTTTTTGATGTGATGGACGAATTGAGTTTGATAGCAGGGGCCAACATTAA
CTAGGTACGGTATTTCTTTTTAGCGGTAAATGTTTAATGAGTTTAATGAT
ATATTTAACTTAAAGATAGTAGCTATAAGAAAAGTCCAAACAATAGTCTA
G
Run BLAST on NCBI

protein sequence of TCONS_00051422-protein

>TCONS_00051422-protein ID=TCONS_00051422-protein|Name=TCONS_00051422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MGIFSKKNTIEFSAQQSYDSVDGGTQRNKILTNIQREARAAAIWLSKQIK
QYSEDNFKRQKTSFFHRLITKRPAYKTPLEFQLFELPPDDDMQRTDERRL
EIIRRIFEQVEKILLVLYNGGAGENVANEILVRLGNLTNPHHSMTKLKLV
MSIKPDAVVWNVTDQDLPKLEYTADNLDPKRWPTLRDTSKIPKDQITDKT
RTKFIMLTIISELFDVMDELSLIAGANIN
Run BLAST on NCBI

transcript from alignment at scaffold_201:485265..486515-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051422 ID=TCONS_00051422|Name=TCONS_00051422|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at scaffold_201:485265..486515- (Clytia hemisphaerica)
CACAACTCAAGAGAGAAGACAAGTACAGAGACTTGAACAAGAAATAAAGA
ATTGATACACGAAAATGGGTAAGAATCTTGCTGCTCTATTCCCTAAACCT
TTCTTCGCCAGCATCCAATATGCGAGTTGTCCTAAGGATTAGAAAAATCA
GATGTTTATCAGTTGTCATGTGTTCGCTTTGCCTTATCTCAAATTAAAAC
ACTTACAGGAAATGCAAATACATCAAATGAATTTGACTTTTTTAGGGTCG
AATAAGACTAGAGTTGACTTCTGACTAAACTGTGCTTTTTGATAATTTTT
AATGACGCTGAGTTCAATAAGGAACACTTAATCGCGCCATCCAGTCTATC
AAATATCCTTAAATGGACCCCGGGCTAAGGTCCTATCGAATTAGGATGTC
AGTTTTCCGAATTATGTAGTTCAACTTTTCAAAATGGATGATCAGCTAAT
TTATTTTATCATTGACAGGTATCTTTAGCAAGAAAAACACAATCGAGTTC
TCTGCACAACAATCATACGACAGTGTCGATGGTGGTACACAACGCAACAA
GATCCTCACCAACATCCAGCGTGAAGCCCGCGCGGCCGCGATATGGCTTT
CCAAACAGATAAAACAGTACAGCGAGGACAACTTTAAACGTCAGAAAACC
TCTTTCTTCCATCGACTCATCACCAAGAGACCAGCCTACAAAACACCACT
GGAATTCCAGTTATTCGAATTGCCGCCAGATGACGACATGCAACGGACTG
ACGAACGTCGGCTGGAAATTATCCGTCGTATTTTCGAGCAGGTTGAAAAG
ATTTTACTCGTCCTCTACAATGGTGGCGCCGGTGAGAATGTAGCTAATGA
AATCTTAGTGCGACTTGGAAATTTAACCAATCCTCACCATTCAATGACCA
AACTTAAGCTTGTCATGTCAATAAAACCTGATGCCGTCGTTTGGAACGTC
ACAGATCAAGATTTGCCCAAGTTAGAATACACTGCGGACAACTTGGACCC
AAAACGCTGGCCAACTCTTAGAGACACCTCCAAAATCCCGAAGGACCAAA
TCACGGACAAAACGAGAACAAAGTTTATTATGCTGACCATTATTTCAGAA
CTTTTTGATGTGATGGACGAATTGAGTTTGATAGCAGGGGCCAACATTAA
CTAGGTACGGTATTTCTTTTTAGCGGTAAATGTTTAATGAGTTTAATGAT
ATATTTAACTTAAAGATAGTAGCTATAAGAAAAGTCCAAACAATAGTCTA
G

Coding sequence (CDS) from alignment at scaffold_201:485265..486515-

>TCONS_00051422 ID=TCONS_00051422|Name=TCONS_00051422|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_201:485265..486515- (Clytia hemisphaerica)
GTATCTTTAGCAAGAAAAACACAATCGAGTTCTCTGCACAACAATCATAC
GACAGTGTCGATGGTGGTACACAACGCAACAAGATCCTCACCAACATCCA
GCGTGAAGCCCGCGCGGCCGCGATATGGCTTTCCAAACAGATAAAACAGT
ACAGCGAGGACAACTTTAAACGTCAGAAAACCTCTTTCTTCCATCGACTC
ATCACCAAGAGACCAGCCTACAAAACACCACTGGAATTCCAGTTATTCGA
ATTGCCGCCAGATGACGACATGCAACGGACTGACGAACGTCGGCTGGAAA
TTATCCGTCGTATTTTCGAGCAGGTTGAAAAGATTTTACTCGTCCTCTAC
AATGGTGGCGCCGGTGAGAATGTAGCTAATGAAATCTTAGTGCGACTTGG
AAATTTAACCAATCCTCACCATTCAATGACCAAACTTAAGCTTGTCATGT
CAATAAAACCTGATGCCGTCGTTTGGAACGTCACAGATCAAGATTTGCCC
AAGTTAGAATACACTGCGGACAACTTGGACCCAAAACGCTGGCCAACTCT
TAGAGACACCTCCAAAATCCCGAAGGACCAAATCACGGACAAAACGAGAA
CAAAGTTTATTATGCTGACCATTATTTCAGAACTTTTTGATGTGATGGAC
GAATTGAGTTTGATAGCAGGGGCCAACATTAACTAGATGGGTATCTTTAG
CAAGAAAAACACAATCGAGTTCTCTGCACAACAATCATACGACAGTGTCG
ATGGTGGTACACAACGCAACAAGATCCTCACCAACATCCAGCGTGAAGCC
CGCGCGGCCGCGATATGGCTTTCCAAACAGATAAAACAGTACAGCGAGGA
CAACTTTAAACGTCAGAAAACCTCTTTCTTCCATCGACTCATCACCAAGA
GACCAGCCTACAAAACACCACTGGAATTCCAGTTATTCGAATTGCCGCCA
GATGACGACATGCAACGGACTGACGAACGTCGGCTGGAAATTATCCGTCG
TATTTTCGAGCAGGTTGAAAAGATTTTACTCGTCCTCTACAATGGTGGCG
CCGGTGAGAATGTAGCTAATGAAATCTTAGTGCGACTTGGAAATTTAACC
AATCCTCACCATTCAATGACCAAACTTAAGCTTGTCATGTCAATAAAACC
TGATGCCGTCGTTTGGAACGTCACAGATCAAGATTTGCCCAAGTTAGAAT
ACACTGCGGACAACTTGGACCCAAAACGCTGGCCAACTCTTAGAGACACC
TCCAAAATCCCGAAGGACCAAATCACGGACAAAACGAGAACAAAGTTTAT
TATGCTGACCATTATTTCAGAACTTTTTGATGTGATGGACGAATTGAGTT
TGATAGCAGGGGCCAACATTAACTAGATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032583XLOC_032583Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051422-proteinTCONS_00051422-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051422-exon-scaffold_201-1575043694:486448..486515TCONS_00051422-exon-scaffold_201-1575043694:486448..486515Clytia hemisphaericaexon
TCONS_00051422-exon-scaffold_201-1575043694:485265..486047TCONS_00051422-exon-scaffold_201-1575043694:485265..486047Clytia hemisphaericaexon
TCONS_00051422-exon-scaffold_201-1510915933:486448..486515TCONS_00051422-exon-scaffold_201-1510915933:486448..486515Clytia hemisphaericaexon
TCONS_00051422-exon-scaffold_201-1510915933:485265..486047TCONS_00051422-exon-scaffold_201-1510915933:485265..486047Clytia hemisphaericaexon
TCONS_00051422-exon-scaffold_201-1491911889:486448..486515TCONS_00051422-exon-scaffold_201-1491911889:486448..486515Clytia hemisphaericaexon
TCONS_00051422-exon-scaffold_201-1491911889:485265..486047TCONS_00051422-exon-scaffold_201-1491911889:485265..486047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:485265..486515 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110523	0.0538885	0.250279	0.122429	0.447138	0.353334	1.27885	4.38989	15.9261	77.2932	18.9236	7.83919	5.40262	5.99236	23.4716	17.8476	38.4561	38.906	1.4686	0.676185	2.03033	2.18914	1.77412	6.85497	18.9268	144.718	0.0757742	0.566078	5.64289	4.3744
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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