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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051423 ID=TCONS_00051423|Name=TCONS_00051423|organism=Clytia hemisphaerica|type=transcript|length=980bp
TCAGCCTCAGTTCTTTATTTAAAAACCTTTGAATTTGTTCATGTCAttca
ctttttgttttatttatattttctagtgaaacaaacaaaaactaaaaact
aaactaaaaacaacaataaaagattgtgaagaaagaataaagaaatcaaa
agaacaAAAGTTGAGAGCATTATAGAATGTCGTATTGTCGAAAAGAAGgC
AAAGATGACATTATATTTGTAACCAAAGACGATTTTGAATCCACCGAAGT
CTCAGAGAAAAAAGATGAGCCCGAGGAAGAAAAAGCCAGCGAACCGAGCG
GATTAATTCTACCGAATGGTGATATCAATTGGGATTGTCCCTGTTTGCAG
GGGATGGGTAAAGGACCTTGTGGAGAAGAATTTAAAGACgctttttcttg
ttttcattATTCTGATGCGGAGCCAAAAGGTTCTGATTGTTTAGATCAAT
TTAAAAACATGCAAGAATGTTTTGTAAAATTCCCAGAAGTATACGGAGGG
ATTGACGATGacgaaaacgaggctaaagcgcCTGAAAGTGAGGCTGACCC
TCTTGCAGAGACTGAAAACGCACCAACTGAGACTGAATCTAGTCCAAATG
ATGAAAAAACTAGCCTGGATGGAAATAAAGAACAAGAAGTATGATTTTCG
AACATGTTCACAGGCTAATTAGTGAGATTTGAGGAGGATTGCCATTCAGA
GAATGATTCCTATGAGTAGAACAGTGAGAAAAGGATGGTTTTATCGAGCA
CAAAGTGATTGAAAACTACCTATGAAACatttaaaagtgaaattttacAA
TATAGACaacatttagtttttttttcaagattttatatatttttaaaatt
ttgtaatgTCTTGTAACCCTTATATTAGATTTTGTGTATCAAATAAGTTT
AGTTAATGCAGTTCTAAAACAGAAATCATGTAGTGTGAAACTATTTGGTT
GTTTTTCTGCATTTTCGGTTTTAAAGGGAG Run BLAST on NCBI protein sequence of TCONS_00051423-protein >TCONS_00051423-protein ID=TCONS_00051423-protein|Name=TCONS_00051423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MSYCRKEGKDDIIFVTKDDFESTEVSEKKDEPEEEKASEPSGLILPNGDI
NWDCPCLQGMGKGPCGEEFKDAFSCFHYSDAEPKGSDCLDQFKNMQECFV
KFPEVYGGIDDDENEAKAPESEADPLAETENAPTETESSPNDEKTSLDGN
KEQEV Run BLAST on NCBI transcript from alignment at scaffold_201:549254..550423- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051423 ID=TCONS_00051423|Name=TCONS_00051423|organism=Clytia hemisphaerica|type=transcript|length=1170bp|location=Sequence derived from alignment at scaffold_201:549254..550423- (Clytia hemisphaerica)
TCAGCCTCAGTTCTTTATTTAAAAACCTTTGAATTTGTTCATGTCATTCA
CTTTTTGTTTTATTTATATTTTCTAGTGAAACAAACAAAAACTAAAAACT
AAACTAAAAACAACAATAAAAGATTGTGAAGAAAGAATAAAGAAATCAAA
AGAACAAAAGTTGAGAGCATTATAGAATGTCGTATTGTCGAAAAGAAGGT
ATTTTTCCCGTTTTTTTAACCACTATATTTGTTTGCAACAATTAGTTCTC
GTCATATACAAATTCTTTTAGGATTTTGCTGCCCGCTTAAATTAGCTCTT
GCCAAAATAAGTTCCCTTAAAGTAGTTGCATTTGCAATTTACAATTATTT
CGGGAAAATCATCTACCATTGTTTTCGTTTTTTTTCAGGCAAAGATGACA
TTATATTTGTAACCAAAGACGATTTTGAATCCACCGAAGTCTCAGAGAAA
AAAGATGAGCCCGAGGAAGAAAAAGCCAGCGAACCGAGCGGATTAATTCT
ACCGAATGGTGATATCAATTGGGATTGTCCCTGTTTGCAGGGGATGGGTA
AAGGACCTTGTGGAGAAGAATTTAAAGACGCTTTTTCTTGTTTTCATTAT
TCTGATGCGGAGCCAAAAGGTTCTGATTGTTTAGATCAATTTAAAAACAT
GCAAGAATGTTTTGTAAAATTCCCAGAAGTATACGGAGGGATTGACGATG
ACGAAAACGAGGCTAAAGCGCCTGAAAGTGAGGCTGACCCTCTTGCAGAG
ACTGAAAACGCACCAACTGAGACTGAATCTAGTCCAAATGATGAAAAAAC
TAGCCTGGATGGAAATAAAGAACAAGAAGTATGATTTTCGAACATGTTCA
CAGGCTAATTAGTGAGATTTGAGGAGGATTGCCATTCAGAGAATGATTCC
TATGAGTAGAACAGTGAGAAAAGGATGGTTTTATCGAGCACAAAGTGATT
GAAAACTACCTATGAAACATTTAAAAGTGAAATTTTACAATATAGACAAC
ATTTAGTTTTTTTTTCAAGATTTTATATATTTTTAAAATTTTGTAATGTC
TTGTAACCCTTATATTAGATTTTGTGTATCAAATAAGTTTAGTTAATGCA
GTTCTAAAACAGAAATCATGTAGTGTGAAACTATTTGGTTGTTTTTCTGC
ATTTTCGGTTTTAAAGGGAG Coding sequence (CDS) from alignment at scaffold_201:549254..550423- >TCONS_00051423 ID=TCONS_00051423|Name=TCONS_00051423|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_201:549254..550423- (Clytia hemisphaerica)
GCAAAGATGACATTATATTTGTAACCAAAGACGATTTTGAATCCACCGAA
GTCTCAGAGAAAAAAGATGAGCCCGAGGAAGAAAAAGCCAGCGAACCGAG
CGGATTAATTCTACCGAATGGTGATATCAATTGGGATTGTCCCTGTTTGC
AGGGGATGGGTAAAGGACCTTGTGGAGAAGAATTTAAAGACGCTTTTTCT
TGTTTTCATTATTCTGATGCGGAGCCAAAAGGTTCTGATTGTTTAGATCA
ATTTAAAAACATGCAAGAATGTTTTGTAAAATTCCCAGAAGTATACGGAG
GGATTGACGATGACGAAAACGAGGCTAAAGCGCCTGAAAGTGAGGCTGAC
CCTCTTGCAGAGACTGAAAACGCACCAACTGAGACTGAATCTAGTCCAAA
TGATGAAAAAACTAGCCTGGATGGAAATAAAGAACAAGAAGTATGAATGT
CGTATTGTCGAAAAGAAGGCAAAGATGACATTATATTTGTAACCAAAGAC
GATTTTGAATCCACCGAAGTCTCAGAGAAAAAAGATGAGCCCGAGGAAGA
AAAAGCCAGCGAACCGAGCGGATTAATTCTACCGAATGGTGATATCAATT
GGGATTGTCCCTGTTTGCAGGGGATGGGTAAAGGACCTTGTGGAGAAGAA
TTTAAAGACGCTTTTTCTTGTTTTCATTATTCTGATGCGGAGCCAAAAGG
TTCTGATTGTTTAGATCAATTTAAAAACATGCAAGAATGTTTTGTAAAAT
TCCCAGAAGTATACGGAGGGATTGACGATGACGAAAACGAGGCTAAAGCG
CCTGAAAGTGAGGCTGACCCTCTTGCAGAGACTGAAAACGCACCAACTGA
GACTGAATCTAGTCCAAATGATGAAAAAACTAGCCTGGATGGAAATAAAG
AACAAGAAGTATGAATGTCGTATTGTCGAAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051423-exon-scaffold_201-1575043694:550226..550423 | TCONS_00051423-exon-scaffold_201-1575043694:550226..550423 | Clytia hemisphaerica | exon |
| TCONS_00051423-exon-scaffold_201-1575043694:549254..550035 | TCONS_00051423-exon-scaffold_201-1575043694:549254..550035 | Clytia hemisphaerica | exon |
| TCONS_00051423-exon-scaffold_201-1510915933:550226..550423 | TCONS_00051423-exon-scaffold_201-1510915933:550226..550423 | Clytia hemisphaerica | exon |
| TCONS_00051423-exon-scaffold_201-1510915933:549254..550035 | TCONS_00051423-exon-scaffold_201-1510915933:549254..550035 | Clytia hemisphaerica | exon |
| TCONS_00051423-exon-scaffold_201-1491911889:550226..550423 | TCONS_00051423-exon-scaffold_201-1491911889:550226..550423 | Clytia hemisphaerica | exon |
| TCONS_00051423-exon-scaffold_201-1491911889:549254..550035 | TCONS_00051423-exon-scaffold_201-1491911889:549254..550035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:549254..550423 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR010625 | CHCH |
Blast
BLAST of TCONS_00051423 vs. Swiss-Prot (Human)
Match: MIA40 (Mitochondrial intermembrane space import and assembly protein 40 OS=Homo sapiens GN=CHCHD4 PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 5.391e-40 Identity = 78/148 (52.70%), Postives = 98/148 (66.22%), Query Frame = 3
Query: 177 MSYCRKEGKDDIIFVTKDDFESTXXXXXXXXXXXXXXXXXXGLILPNGDINWDCPCLQGMGKGPCGEEFKDAFSCFHYSDAEPKGSDCLDQFKNMQECFVKFPEVY--GGIDDDENEAKAPESEADPLAETENAPTETESSPNDEKTS 614
MSYCR+EGKD IIFVTK+D E T S + + E GLILPNG+INW+CPCL GM GPCGE+FK AFSCFHYS E KGSDC+DQF+ MQEC K+P++Y D++E K P +A+ E AP E ++ +E +S
Sbjct: 1 MSYCRQEGKDRIIFVTKEDHE-TPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREKKPAEQAE-----ETAPIEATATKEEEGSS 142
The following BLAST results are available for this feature:
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