TCONS_00051425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051425
Unique NameTCONS_00051425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051425 ID=TCONS_00051425|Name=TCONS_00051425|organism=Clytia hemisphaerica|type=transcript|length=1462bp
CCACCTTCGAGAATAGACGTTCGAAGGATTTTTCTCGCTTTTTCGTGAGA
AATAGTAGTATCGATTTGTTCATATCAATCTTTAACGATTGATATTAATT
GTTATAATAATGAGTGGTATAGCACACGAGTGTTTACAGCATGGTTTTGT
TCTGGGACGGAGTCTAGGCGAGGGAGGATACGGGCAAGTCAAACAAGCGT
CGTACGTGAACTTTAACTGCCCCAATGATACTCTCGCCAAGAGGCTCCGC
TCCTTTGGACACAGTGACCAAGTTGCtatcaaaataatgaagaaaGCAAG
CTGCTCTCAAACCTTCGAAAGGGAAGTGAGTTGCATGCTAAAACTGACTG
GCTGTCGGAACGTTGTCCAGTTATTCAGATACTTCACCGGAGAAAACCAT
GTTTACTTGGTGATCGAACTTTGTACTGGAGGTGACTTGATCACACATTT
CACCAACAGCCAGAAAATTAacgtaaagaaaatttttcaacagaTTGCTG
ATGGCGTGCAGCAAATGCACGTAAAGGGCATCGCCCACCGAGACTTGAAA
CCAGAAAACGTCTTGATTGACCGAAATGGTATCGCTAAGATCTCAGACTT
TGGTACTACAATCATGCCATCATCTCCGGACAACCTTTGTAATTCCTATT
GTGGAACACCGGAATATATGGCACCAGAGGTCCTGCGTGGAGTTAAGCTC
ATCAGTTACAAACCGTACAATCCTTTCAAGGCCGATATGTGGAGTTTAGG
TGCTATCCTGTATTCCTTTCTTACTGGAGAGTTCCTTCCACAAGTTGGTt
cttggaaagaaaatttgtccGTCTCTAATGAATGTCTTGATCTCTTGGCC
AAGCTCTTGAGTATCAAACCATCGTTGAGACCAACCATTGGTGACATTCA
AAGACACCCCTGGCTTTCGGCTTCTCATAAGGAACCCGCAATCAAACAAA
TAGAGTTGATCAACAATATGATCAAAGAATTTGATTGTTTGGTGGATAGA
AAAAAGGCTCTTAAAGAAGAGTTAACCGaagctgaaaataaaaataaaat
ccttAAATTGAAACTTGGCATCAGTGAAAAGCAACCATCTCGCTACAAAG
TCATCGTTCAACAAGATCTAGACGAAAAGATACCGACCACTGCCCAAGAA
GCTAGCGacgaaatggccaaaatgaTGAACAATCTCGCCCATAATATCAA
GAGAGCAAATATCTtattaaaaagacaaaaagcgGATTTGAAAAAACTGA
ACGACAAAAATGTACTTCtcgaacaaaatttttttgagaagatACTGAGA
AACAACGCCGCTTCAAATCCTCAATTCCCAAATGGGCATCATTTTCCATC
CACGGAATTATGGGAATGAAAACctccaaaaaatattcaaatttgtaaat
agttttttttaaatctatattaattttgtaaatagttttattttatcttt
acTTATGGTGGc
Run BLAST on NCBI

protein sequence of TCONS_00051425-protein

>TCONS_00051425-protein ID=TCONS_00051425-protein|Name=TCONS_00051425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
MSGIAHECLQHGFVLGRSLGEGGYGQVKQASYVNFNCPNDTLAKRLRSFG
HSDQVAIKIMKKASCSQTFEREVSCMLKLTGCRNVVQLFRYFTGENHVYL
VIELCTGGDLITHFTNSQKINVKKIFQQIADGVQQMHVKGIAHRDLKPEN
VLIDRNGIAKISDFGTTIMPSSPDNLCNSYCGTPEYMAPEVLRGVKLISY
KPYNPFKADMWSLGAILYSFLTGEFLPQVGSWKENLSVSNECLDLLAKLL
SIKPSLRPTIGDIQRHPWLSASHKEPAIKQIELINNMIKEFDCLVDRKKA
LKEELTEAENKNKILKLKLGISEKQPSRYKVIVQQDLDEKIPTTAQEASD
EMAKMMNNLAHNIKRANILLKRQKADLKKLNDKNVLLEQNFFEKILRNNA
ASNPQFPNGHHFPSTELWE
Run BLAST on NCBI

transcript from alignment at scaffold_201:572788..576707-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051425 ID=TCONS_00051425|Name=TCONS_00051425|organism=Clytia hemisphaerica|type=transcript|length=3920bp|location=Sequence derived from alignment at scaffold_201:572788..576707- (Clytia hemisphaerica)
CCACCTTCGAGAATAGACGTTCGAAGGATTTTTCTCGCTTTTTCGTGAGA
AATAGTAGTATCGATTTGTTCATATCAATCTTTAACGATTGATATTAATT
GTTATAATAATGAGTGGTATAGCACACGAGTGTTTACAGCATGGTTTTGT
TCTGGGACGGAGTCTAGGCGAGGGAGGATACGGGCAAGTCAAACAAGCGT
CGTACGTGAACTTTAACTGCCCCAATGATACTCTCGCCAAGAGGCTCCGC
TCCTTTGGACACAGTGACCAAGTAAGTTATTAATTGCTCAACTTTCATTG
CTTTATATTCAATACGTTCGTTGCTTTTCTTTCTTTCCCTAATATTTTTA
GCTAGACTATAATAGACGCTAGATTCTACTGCCCAGACAATCATCAAGCC
AAAAAGCTGAGATTATAGTATAAGTTTTGAATAGTAAAACAAAGATTGTT
GATAACGTCTTTAAATAAACGGGTTATTGATTATTCGTTGGTTTTGCAAG
TGCAATGTGTTTCTTCTTAATAATTTCATAATTTTTTTTCCCATTTAAAG
GTTGCTATCAAAATAATGAAGAAAGCAAGCTGCTCTCAAACCTTCGAAAG
GGAAGTGAGTTGCATGCTAAAACTGACTGGCTGTCGGAACGTTGTCCAGT
TATTCAGATACTTCACCGGAGAAAACCATGTTTACTTGGTGATCGAACTT
TGTACTGGAGGTGACTTGATCACACATTTCACCAACAGCCAGAAAATTAA
CGTAAAGAAAATTTTTCAACAGATTGCTGATGGCGTGCAGCAAATGCACG
TAAAGGGCATCGCCCACCGGTAAGTTTAAGAACCTATTGATGGTGATGTC
TGCCTATTTGTCTTTCGATGTGGTGACACTCAAATCAAGTCATATTTTTG
CACTTGGTCATAGCACCCTTAGGTTTCAATACGATGACACGGAGCCGATT
TGAACAGTTTTGGGGTTTTTCAAAATGTTCATGGAGCATTGTTAAAAAGA
AGAATTTTATACAAATTAAACCTATTCATTTCATGTTTTTCAGAGACTTG
AAACCAGAAAACGTCTTGATTGACCGAAATGGTATCGCTAAGATCTCAGG
TATGTTTTCCATTCATTTTAAAGCAATTCAGGATCGTCTCTAAATGCCTT
TGTACAATCCCCCCTGTAAATTAAATAAATATGAAATAGCGTGTAACAGA
GGCAGGCACCGATTCCTATGAAATAGGTCAATTGAACCAATTCCGTGTGT
GATGATTAAAAACTTTTTAATCGTATTTTTTCAGACTTTGGTACTACAAT
CATGCCATCATCTCCGGACAACCTTTGTAATTCCTATTGTGGAACACCGG
AATATATGGCACCAGAGGTCCTGCGTGGAGTTAAGCTCATCAGTTACAAA
CCGTACAATCCTTTCAAGGCCGATATGTGGAGTTTGTAAGTCAATCTGTT
TTAATACATTGTCAATTTTATTCGAAAAGCTAACAGTAGGTCTCTCTGTG
TCATTATGAATATGCCAACTTATTACGAGACTTGCCGCGGTGAAATTTCA
TCATTTTTTAATTCCACCCTGAAAAGAAAAAAATTATAAAGGAATGATCC
AAAGTCAGAAAACGCGGGAAAGAGTTAGGGCGTCAGGGCTGTTAACGGGA
AGAATAGCGGTGGTAGAGTTTTGGAAGACTGTAAACATCTCCGCCACTGC
TTACTCCACCCGAATTTATCACGCCTCTCCTAAACTATTCCCTTTTTTTA
GTGATCTTGTGTAGACGATAGGATCGTCTACCCTAACATATTCATTTTTT
CAAAAATTTAATGAATCTGCGGCCTTATCAGATATTTTCTGAACCTGAAA
AAAGAAGTCATNCATATTCATTTTTTCAAAAATTTAATGAATCTGCGGCC
TTATCAGATATTTTCCGAACCTGAAAAAAGAAGTCATTTGTAGCCTGAAT
GATGAGTCAAATTGGGGTCTATAGAATATATCTTAAATTGGTTGTAGCAG
GTCACTTTTTTTTAAAGATTTTTTCTCTGTAAAAAATTCATTTTTTTCTC
TCAATTTTAGAGGTGCTATCCTGTATTCCTTTCTTACTGGAGAGTTCCTT
CCACAAGTTGGTTCTTGGAAAGAAAATTTGTCCGTCTCTAATGGTAAGTT
TGAAGGTATCGTTCAAGTGGATGATTTCTACAATTCCTGGAGAAATTTTG
AGGCCCAGTACTGACGAACCCTGAACTAGGAGGAAGCTCTGGCAGTATTA
GCACTTTTCAACAAAATAAGAATTTTAGCAACTTTCTGTTGTCGCTGACC
CAAAAAAGGGTATTTTAGTGGCTCCTGCATGCCCTAACTCATTTGTACAG
TAGTCGAAAAATTGTGACATTCTAAAGATTTTCCTGGGCCATTTTTTGCT
TGCGATGAAAATGACCACTTGGATTGAACTTTATTCTTTATATTCATTGT
TTAGAATGTCTTGATCTCTTGGCCAAGCTCTTGAGTATCAAACCATCGTT
GAGACCAACCATTGGTGACATTCAAAGACACCCCTGGCTTTCGGCTTCTC
ATAAGGTGATTTTCTAAAGTGTGTCCGCAAAAAAGAATAAGAATTTATTT
TCATCAAAACATTTTGGAAATGACAAACTCTGCATTGCTGATCTTATAAA
AAATTGTTCCAACCGGTTGATTTATTTATTTGTAAAAACACTTCATTCCA
CCCACGACTGGATAACAATTTTCGCCAAATACTCCTTTTTTATCTGAATG
ATTTAACCATAACGTGAAATCATTAAATCATTAACATTGAAACTTCTTTT
CTAGGAACCCGCAATCAAACAAATAGAGTTGATCAACAATATGATCAAAG
AATTTGATTGTTTGGTGGATAGAAAAAAGGCTCTTAAAGAAGAGTTAACC
GAAGCTGAAAATAAAAATAAAATCCTTAAATTGAAACTTGGCATCAGTGA
AAAGGTGAGAAAATGTCATTTTTTTGGCGATATCTCAGTCTGTTAAAATG
AACGAGAATAAAAAAATACAAAAAGGTTTTTCCCAGATTCCCATATATTT
TTAGTCCAAGTGTCTTTTATAGTATGTTGTTACAGAAGCGTAGGCAGAAG
GGGCGCAAAATTTGTGTAGGAGAGCAAACTTTCATGACACTGTGATTATC
TATTCATAATGTAAAAAGATAATCAGAGTGTCATAAAAATCTGCTCTCCC
ACATAAATTTTGCGCCCCTCCTGTCTACGCTACTGTTTGTAAGCCCTCGT
ATTATTTCAAAGCGATTTGCGCTAGACATAATCGAATAATTTTCGCCAGA
TGAAGTTCACATTTTCGCCTGAGTAAACGAAAATAAATTCACGCGAGATT
TTCGAAATTGTGCTTTCCGACGCAAAGCTTATAATTTAATTCTAACTATG
TTCTAGCAACCATCTCGCTACAAAGTCATCGTTCAACAAGATCTAGACGA
AAAGGTGAGTTTACTTTCTTAAATGTTAGCACTTTTCGCTTTTCAGTAGG
AATTGAAGTTTTTAGTGTAATTTCCTAAAAAATTACCGTACTTTTTTTTT
CTACAGTAAAAACAACTGATAATTTATTTTCTCATAGATACCGACCACTG
CCCAAGAAGCTAGCGACGAAATGGCCAAAATGATGAACAATCTCGCCCAT
AATATCAAGAGAGCAAATATCTTATTAAAAAGACAAAAAGCGGATTTGAA
AAAACTGAACGACAAAAATGTACTTCTCGAACAAAATTTTTTTGAGAAGA
TACTGAGAAACAACGCCGCTTCAAATCCTCAATTCCCAAATGGGCATCAT
TTTCCATCCACGGAATTATGGGAATGAAAACCTCCAAAAAATATTCAAAT
TTGTAAATAGTTTTTTTTAAATCTATATTAATTTTGTAAATAGTTTTATT
TTATCTTTACTTATGGTGGC

Coding sequence (CDS) from alignment at scaffold_201:572788..576707-

>TCONS_00051425 ID=TCONS_00051425|Name=TCONS_00051425|organism=Clytia hemisphaerica|type=CDS|length=11340bp|location=Sequence derived from alignment at scaffold_201:572788..576707- (Clytia hemisphaerica)
ATACCGACCACTGCCCAAGAAGCTAGCGACGAAATGGCCAAAATGATGAA
CAATCTCGCCCATAATATCAAGAGAGCAAATATCTTATTAAAAAGACAAA
AAGCGGATTTGAAAAAACTGAACGACAAAAATGTACTTCTCGAACAAAAT
TTTTTTGAGAAGATACTGAGAAACAACGCCGCTTCAAATCCTCAATTCCC
AAATGGGCATCATTTTCCATCCACGGAATTATGGGAATGACAACCATCTC
GCTACAAAGTCATCGTTCAACAAGATCTAGACGAAAAGGAACCCGCAATC
AAACAAATAGAGTTGATCAACAATATGATCAAAGAATTTGATTGTTTGGT
GGATAGAAAAAAGGCTCTTAAAGAAGAGTTAACCGAAGCTGAAAATAAAA
ATAAAATCCTTAAATTGAAACTTGGCATCAGTGAAAAGAATGTCTTGATC
TCTTGGCCAAGCTCTTGAGTATCAAACCATCGTTGAGACCAACCATTGGT
GACATTCAAAGACACCCCTGGCTTTCGGCTTCTCATAAGAGGTGCTATCC
TGTATTCCTTTCTTACTGGAGAGTTCCTTCCACAAGTTGGTTCTTGGAAA
GAAAATTTGTCCGTCTCTAATGACTTTGGTACTACAATCATGCCATCATC
TCCGGACAACCTTTGTAATTCCTATTGTGGAACACCGGAATATATGGCAC
CAGAGGTCCTGCGTGGAGTTAAGCTCATCAGTTACAAACCGTACAATCCT
TTCAAGGCCGATATGTGGAGTTTAGACTTGAAACCAGAAAACGTCTTGAT
TGACCGAAATGGTATCGCTAAGATCTCAGGTTGCTATCAAAATAATGAAG
AAAGCAAGCTGCTCTCAAACCTTCGAAAGGGAAGTGAGTTGCATGCTAAA
ACTGACTGGCTGTCGGAACGTTGTCCAGTTATTCAGATACTTCACCGGAG
AAAACCATGTTTACTTGGTGATCGAACTTTGTACTGGAGGTGACTTGATC
ACACATTTCACCAACAGCCAGAAAATTAACGTAAAGAAAATTTTTCAACA
GATTGCTGATGGCGTGCAGCAAATGCACGTAAAGGGCATCGCCCACCGAT
GAGTGGTATAGCACACGAGTGTTTACAGCATGGTTTTGTTCTGGGACGGA
GTCTAGGCGAGGGAGGATACGGGCAAGTCAAACAAGCGTCGTACGTGAAC
TTTAACTGCCCCAATGATACTCTCGCCAAGAGGCTCCGCTCCTTTGGACA
CAGTGACCAAATACCGACCACTGCCCAAGAAGCTAGCGACGAAATGGCCA
AAATGATGAACAATCTCGCCCATAATATCAAGAGAGCAAATATCTTATTA
AAAAGACAAAAAGCGGATTTGAAAAAACTGAACGACAAAAATGTACTTCT
CGAACAAAATTTTTTTGAGAAGATACTGAGAAACAACGCCGCTTCAAATC
CTCAATTCCCAAATGGGCATCATTTTCCATCCACGGAATTATGGGAATGA
CAACCATCTCGCTACAAAGTCATCGTTCAACAAGATCTAGACGAAAAGGA
ACCCGCAATCAAACAAATAGAGTTGATCAACAATATGATCAAAGAATTTG
ATTGTTTGGTGGATAGAAAAAAGGCTCTTAAAGAAGAGTTAACCGAAGCT
GAAAATAAAAATAAAATCCTTAAATTGAAACTTGGCATCAGTGAAAAGAA
TGTCTTGATCTCTTGGCCAAGCTCTTGAGTATCAAACCATCGTTGAGACC
AACCATTGGTGACATTCAAAGACACCCCTGGCTTTCGGCTTCTCATAAGA
GGTGCTATCCTGTATTCCTTTCTTACTGGAGAGTTCCTTCCACAAGTTGG
TTCTTGGAAAGAAAATTTGTCCGTCTCTAATGACTTTGGTACTACAATCA
TGCCATCATCTCCGGACAACCTTTGTAATTCCTATTGTGGAACACCGGAA
TATATGGCACCAGAGGTCCTGCGTGGAGTTAAGCTCATCAGTTACAAACC
GTACAATCCTTTCAAGGCCGATATGTGGAGTTTAGACTTGAAACCAGAAA
ACGTCTTGATTGACCGAAATGGTATCGCTAAGATCTCAGGTTGCTATCAA
AATAATGAAGAAAGCAAGCTGCTCTCAAACCTTCGAAAGGGAAGTGAGTT
GCATGCTAAAACTGACTGGCTGTCGGAACGTTGTCCAGTTATTCAGATAC
TTCACCGGAGAAAACCATGTTTACTTGGTGATCGAACTTTGTACTGGAGG
TGACTTGATCACACATTTCACCAACAGCCAGAAAATTAACGTAAAGAAAA
TTTTTCAACAGATTGCTGATGGCGTGCAGCAAATGCACGTAAAGGGCATC
GCCCACCGATGAGTGGTATAGCACACGAGTGTTTACAGCATGGTTTTGTT
CTGGGACGGAGTCTAGGCGAGGGAGGATACGGGCAAGTCAAACAAGCGTC
GTACGTGAACTTTAACTGCCCCAATGATACTCTCGCCAAGAGGCTCCGCT
CCTTTGGACACAGTGACCAAATACCGACCACTGCCCAAGAAGCTAGCGAC
GAAATGGCCAAAATGATGAACAATCTCGCCCATAATATCAAGAGAGCAAA
TATCTTATTAAAAAGACAAAAAGCGGATTTGAAAAAACTGAACGACAAAA
ATGTACTTCTCGAACAAAATTTTTTTGAGAAGATACTGAGAAACAACGCC
GCTTCAAATCCTCAATTCCCAAATGGGCATCATTTTCCATCCACGGAATT
ATGGGAATGACAACCATCTCGCTACAAAGTCATCGTTCAACAAGATCTAG
ACGAAAAGGAACCCGCAATCAAACAAATAGAGTTGATCAACAATATGATC
AAAGAATTTGATTGTTTGGTGGATAGAAAAAAGGCTCTTAAAGAAGAGTT
AACCGAAGCTGAAAATAAAAATAAAATCCTTAAATTGAAACTTGGCATCA
GTGAAAAGAATGTCTTGATCTCTTGGCCAAGCTCTTGAGTATCAAACCAT
CGTTGAGACCAACCATTGGTGACATTCAAAGACACCCCTGGCTTTCGGCT
TCTCATAAGAGGTGCTATCCTGTATTCCTTTCTTACTGGAGAGTTCCTTC
CACAAGTTGGTTCTTGGAAAGAAAATTTGTCCGTCTCTAATGACTTTGGT
ACTACAATCATGCCATCATCTCCGGACAACCTTTGTAATTCCTATTGTGG
AACACCGGAATATATGGCACCAGAGGTCCTGCGTGGAGTTAAGCTCATCA
GTTACAAACCGTACAATCCTTTCAAGGCCGATATGTGGAGTTTAGACTTG
AAACCAGAAAACGTCTTGATTGACCGAAATGGTATCGCTAAGATCTCAGG
TTGCTATCAAAATAATGAAGAAAGCAAGCTGCTCTCAAACCTTCGAAAGG
GAAGTGAGTTGCATGCTAAAACTGACTGGCTGTCGGAACGTTGTCCAGTT
ATTCAGATACTTCACCGGAGAAAACCATGTTTACTTGGTGATCGAACTTT
GTACTGGAGGTGACTTGATCACACATTTCACCAACAGCCAGAAAATTAAC
GTAAAGAAAATTTTTCAACAGATTGCTGATGGCGTGCAGCAAATGCACGT
AAAGGGCATCGCCCACCGATGAGTGGTATAGCACACGAGTGTTTACAGCA
TGGTTTTGTTCTGGGACGGAGTCTAGGCGAGGGAGGATACGGGCAAGTCA
AACAAGCGTCGTACGTGAACTTTAACTGCCCCAATGATACTCTCGCCAAG
AGGCTCCGCTCCTTTGGACACAGTGACCAAATACCGACCACTGCCCAAGA
AGCTAGCGACGAAATGGCCAAAATGATGAACAATCTCGCCCATAATATCA
AGAGAGCAAATATCTTATTAAAAAGACAAAAAGCGGATTTGAAAAAACTG
AACGACAAAAATGTACTTCTCGAACAAAATTTTTTTGAGAAGATACTGAG
AAACAACGCCGCTTCAAATCCTCAATTCCCAAATGGGCATCATTTTCCAT
CCACGGAATTATGGGAATGACAACCATCTCGCTACAAAGTCATCGTTCAA
CAAGATCTAGACGAAAAGGAACCCGCAATCAAACAAATAGAGTTGATCAA
CAATATGATCAAAGAATTTGATTGTTTGGTGGATAGAAAAAAGGCTCTTA
AAGAAGAGTTAACCGAAGCTGAAAATAAAAATAAAATCCTTAAATTGAAA
CTTGGCATCAGTGAAAAGAATGTCTTGATCTCTTGGCCAAGCTCTTGAGT
ATCAAACCATCGTTGAGACCAACCATTGGTGACATTCAAAGACACCCCTG
GCTTTCGGCTTCTCATAAGAGGTGCTATCCTGTATTCCTTTCTTACTGGA
GAGTTCCTTCCACAAGTTGGTTCTTGGAAAGAAAATTTGTCCGTCTCTAA
TGACTTTGGTACTACAATCATGCCATCATCTCCGGACAACCTTTGTAATT
CCTATTGTGGAACACCGGAATATATGGCACCAGAGGTCCTGCGTGGAGTT
AAGCTCATCAGTTACAAACCGTACAATCCTTTCAAGGCCGATATGTGGAG
TTTAGACTTGAAACCAGAAAACGTCTTGATTGACCGAAATGGTATCGCTA
AGATCTCAGGTTGCTATCAAAATAATGAAGAAAGCAAGCTGCTCTCAAAC
CTTCGAAAGGGAAGTGAGTTGCATGCTAAAACTGACTGGCTGTCGGAACG
TTGTCCAGTTATTCAGATACTTCACCGGAGAAAACCATGTTTACTTGGTG
ATCGAACTTTGTACTGGAGGTGACTTGATCACACATTTCACCAACAGCCA
GAAAATTAACGTAAAGAAAATTTTTCAACAGATTGCTGATGGCGTGCAGC
AAATGCACGTAAAGGGCATCGCCCACCGATGAGTGGTATAGCACACGAGT
GTTTACAGCATGGTTTTGTTCTGGGACGGAGTCTAGGCGAGGGAGGATAC
GGGCAAGTCAAACAAGCGTCGTACGTGAACTTTAACTGCCCCAATGATAC
TCTCGCCAAGAGGCTCCGCTCCTTTGGACACAGTGACCAAATACCGACCA
CTGCCCAAGAAGCTAGCGACGAAATGGCCAAAATGATGAACAATCTCGCC
CATAATATCAAGAGAGCAAATATCTTATTAAAAAGACAAAAAGCGGATTT
GAAAAAACTGAACGACAAAAATGTACTTCTCGAACAAAATTTTTTTGAGA
AGATACTGAGAAACAACGCCGCTTCAAATCCTCAATTCCCAAATGGGCAT
CATTTTCCATCCACGGAATTATGGGAATGACAACCATCTCGCTACAAAGT
CATCGTTCAACAAGATCTAGACGAAAAGGAACCCGCAATCAAACAAATAG
AGTTGATCAACAATATGATCAAAGAATTTGATTGTTTGGTGGATAGAAAA
AAGGCTCTTAAAGAAGAGTTAACCGAAGCTGAAAATAAAAATAAAATCCT
TAAATTGAAACTTGGCATCAGTGAAAAGAATGTCTTGATCTCTTGGCCAA
GCTCTTGAGTATCAAACCATCGTTGAGACCAACCATTGGTGACATTCAAA
GACACCCCTGGCTTTCGGCTTCTCATAAGAGGTGCTATCCTGTATTCCTT
TCTTACTGGAGAGTTCCTTCCACAAGTTGGTTCTTGGAAAGAAAATTTGT
CCGTCTCTAATGACTTTGGTACTACAATCATGCCATCATCTCCGGACAAC
CTTTGTAATTCCTATTGTGGAACACCGGAATATATGGCACCAGAGGTCCT
GCGTGGAGTTAAGCTCATCAGTTACAAACCGTACAATCCTTTCAAGGCCG
ATATGTGGAGTTTAGACTTGAAACCAGAAAACGTCTTGATTGACCGAAAT
GGTATCGCTAAGATCTCAGGTTGCTATCAAAATAATGAAGAAAGCAAGCT
GCTCTCAAACCTTCGAAAGGGAAGTGAGTTGCATGCTAAAACTGACTGGC
TGTCGGAACGTTGTCCAGTTATTCAGATACTTCACCGGAGAAAACCATGT
TTACTTGGTGATCGAACTTTGTACTGGAGGTGACTTGATCACACATTTCA
CCAACAGCCAGAAAATTAACGTAAAGAAAATTTTTCAACAGATTGCTGAT
GGCGTGCAGCAAATGCACGTAAAGGGCATCGCCCACCGATGAGTGGTATA
GCACACGAGTGTTTACAGCATGGTTTTGTTCTGGGACGGAGTCTAGGCGA
GGGAGGATACGGGCAAGTCAAACAAGCGTCGTACGTGAACTTTAACTGCC
CCAATGATACTCTCGCCAAGAGGCTCCGCTCCTTTGGACACAGTGACCAA
ATACCGACCACTGCCCAAGAAGCTAGCGACGAAATGGCCAAAATGATGAA
CAATCTCGCCCATAATATCAAGAGAGCAAATATCTTATTAAAAAGACAAA
AAGCGGATTTGAAAAAACTGAACGACAAAAATGTACTTCTCGAACAAAAT
TTTTTTGAGAAGATACTGAGAAACAACGCCGCTTCAAATCCTCAATTCCC
AAATGGGCATCATTTTCCATCCACGGAATTATGGGAATGACAACCATCTC
GCTACAAAGTCATCGTTCAACAAGATCTAGACGAAAAGGAACCCGCAATC
AAACAAATAGAGTTGATCAACAATATGATCAAAGAATTTGATTGTTTGGT
GGATAGAAAAAAGGCTCTTAAAGAAGAGTTAACCGAAGCTGAAAATAAAA
ATAAAATCCTTAAATTGAAACTTGGCATCAGTGAAAAGAATGTCTTGATC
TCTTGGCCAAGCTCTTGAGTATCAAACCATCGTTGAGACCAACCATTGGT
GACATTCAAAGACACCCCTGGCTTTCGGCTTCTCATAAGAGGTGCTATCC
TGTATTCCTTTCTTACTGGAGAGTTCCTTCCACAAGTTGGTTCTTGGAAA
GAAAATTTGTCCGTCTCTAATGACTTTGGTACTACAATCATGCCATCATC
TCCGGACAACCTTTGTAATTCCTATTGTGGAACACCGGAATATATGGCAC
CAGAGGTCCTGCGTGGAGTTAAGCTCATCAGTTACAAACCGTACAATCCT
TTCAAGGCCGATATGTGGAGTTTAGACTTGAAACCAGAAAACGTCTTGAT
TGACCGAAATGGTATCGCTAAGATCTCAGGTTGCTATCAAAATAATGAAG
AAAGCAAGCTGCTCTCAAACCTTCGAAAGGGAAGTGAGTTGCATGCTAAA
ACTGACTGGCTGTCGGAACGTTGTCCAGTTATTCAGATACTTCACCGGAG
AAAACCATGTTTACTTGGTGATCGAACTTTGTACTGGAGGTGACTTGATC
ACACATTTCACCAACAGCCAGAAAATTAACGTAAAGAAAATTTTTCAACA
GATTGCTGATGGCGTGCAGCAAATGCACGTAAAGGGCATCGCCCACCGAT
GAGTGGTATAGCACACGAGTGTTTACAGCATGGTTTTGTTCTGGGACGGA
GTCTAGGCGAGGGAGGATACGGGCAAGTCAAACAAGCGTCGTACGTGAAC
TTTAACTGCCCCAATGATACTCTCGCCAAGAGGCTCCGCTCCTTTGGACA
CAGTGACCAAATACCGACCACTGCCCAAGAAGCTAGCGACGAAATGGCCA
AAATGATGAACAATCTCGCCCATAATATCAAGAGAGCAAATATCTTATTA
AAAAGACAAAAAGCGGATTTGAAAAAACTGAACGACAAAAATGTACTTCT
CGAACAAAATTTTTTTGAGAAGATACTGAGAAACAACGCCGCTTCAAATC
CTCAATTCCCAAATGGGCATCATTTTCCATCCACGGAATTATGGGAATGA
CAACCATCTCGCTACAAAGTCATCGTTCAACAAGATCTAGACGAAAAGGA
ACCCGCAATCAAACAAATAGAGTTGATCAACAATATGATCAAAGAATTTG
ATTGTTTGGTGGATAGAAAAAAGGCTCTTAAAGAAGAGTTAACCGAAGCT
GAAAATAAAAATAAAATCCTTAAATTGAAACTTGGCATCAGTGAAAAGAA
TGTCTTGATCTCTTGGCCAAGCTCTTGAGTATCAAACCATCGTTGAGACC
AACCATTGGTGACATTCAAAGACACCCCTGGCTTTCGGCTTCTCATAAGA
GGTGCTATCCTGTATTCCTTTCTTACTGGAGAGTTCCTTCCACAAGTTGG
TTCTTGGAAAGAAAATTTGTCCGTCTCTAATGACTTTGGTACTACAATCA
TGCCATCATCTCCGGACAACCTTTGTAATTCCTATTGTGGAACACCGGAA
TATATGGCACCAGAGGTCCTGCGTGGAGTTAAGCTCATCAGTTACAAACC
GTACAATCCTTTCAAGGCCGATATGTGGAGTTTAGACTTGAAACCAGAAA
ACGTCTTGATTGACCGAAATGGTATCGCTAAGATCTCAGGTTGCTATCAA
AATAATGAAGAAAGCAAGCTGCTCTCAAACCTTCGAAAGGGAAGTGAGTT
GCATGCTAAAACTGACTGGCTGTCGGAACGTTGTCCAGTTATTCAGATAC
TTCACCGGAGAAAACCATGTTTACTTGGTGATCGAACTTTGTACTGGAGG
TGACTTGATCACACATTTCACCAACAGCCAGAAAATTAACGTAAAGAAAA
TTTTTCAACAGATTGCTGATGGCGTGCAGCAAATGCACGTAAAGGGCATC
GCCCACCGATGAGTGGTATAGCACACGAGTGTTTACAGCATGGTTTTGTT
CTGGGACGGAGTCTAGGCGAGGGAGGATACGGGCAAGTCAAACAAGCGTC
GTACGTGAACTTTAACTGCCCCAATGATACTCTCGCCAAGAGGCTCCGCT
CCTTTGGACACAGTGACCAAATACCGACCACTGCCCAAGAAGCTAGCGAC
GAAATGGCCAAAATGATGAACAATCTCGCCCATAATATCAAGAGAGCAAA
TATCTTATTAAAAAGACAAAAAGCGGATTTGAAAAAACTGAACGACAAAA
ATGTACTTCTCGAACAAAATTTTTTTGAGAAGATACTGAGAAACAACGCC
GCTTCAAATCCTCAATTCCCAAATGGGCATCATTTTCCATCCACGGAATT
ATGGGAATGACAACCATCTCGCTACAAAGTCATCGTTCAACAAGATCTAG
ACGAAAAGGAACCCGCAATCAAACAAATAGAGTTGATCAACAATATGATC
AAAGAATTTGATTGTTTGGTGGATAGAAAAAAGGCTCTTAAAGAAGAGTT
AACCGAAGCTGAAAATAAAAATAAAATCCTTAAATTGAAACTTGGCATCA
GTGAAAAGAATGTCTTGATCTCTTGGCCAAGCTCTTGAGTATCAAACCAT
CGTTGAGACCAACCATTGGTGACATTCAAAGACACCCCTGGCTTTCGGCT
TCTCATAAGAGGTGCTATCCTGTATTCCTTTCTTACTGGAGAGTTCCTTC
CACAAGTTGGTTCTTGGAAAGAAAATTTGTCCGTCTCTAATGACTTTGGT
ACTACAATCATGCCATCATCTCCGGACAACCTTTGTAATTCCTATTGTGG
AACACCGGAATATATGGCACCAGAGGTCCTGCGTGGAGTTAAGCTCATCA
GTTACAAACCGTACAATCCTTTCAAGGCCGATATGTGGAGTTTAGACTTG
AAACCAGAAAACGTCTTGATTGACCGAAATGGTATCGCTAAGATCTCAGG
TTGCTATCAAAATAATGAAGAAAGCAAGCTGCTCTCAAACCTTCGAAAGG
GAAGTGAGTTGCATGCTAAAACTGACTGGCTGTCGGAACGTTGTCCAGTT
ATTCAGATACTTCACCGGAGAAAACCATGTTTACTTGGTGATCGAACTTT
GTACTGGAGGTGACTTGATCACACATTTCACCAACAGCCAGAAAATTAAC
GTAAAGAAAATTTTTCAACAGATTGCTGATGGCGTGCAGCAAATGCACGT
AAAGGGCATCGCCCACCGATGAGTGGTATAGCACACGAGTGTTTACAGCA
TGGTTTTGTTCTGGGACGGAGTCTAGGCGAGGGAGGATACGGGCAAGTCA
AACAAGCGTCGTACGTGAACTTTAACTGCCCCAATGATACTCTCGCCAAG
AGGCTCCGCTCCTTTGGACACAGTGACCAAATACCGACCACTGCCCAAGA
AGCTAGCGACGAAATGGCCAAAATGATGAACAATCTCGCCCATAATATCA
AGAGAGCAAATATCTTATTAAAAAGACAAAAAGCGGATTTGAAAAAACTG
AACGACAAAAATGTACTTCTCGAACAAAATTTTTTTGAGAAGATACTGAG
AAACAACGCCGCTTCAAATCCTCAATTCCCAAATGGGCATCATTTTCCAT
CCACGGAATTATGGGAATGACAACCATCTCGCTACAAAGTCATCGTTCAA
CAAGATCTAGACGAAAAGGAACCCGCAATCAAACAAATAGAGTTGATCAA
CAATATGATCAAAGAATTTGATTGTTTGGTGGATAGAAAAAAGGCTCTTA
AAGAAGAGTTAACCGAAGCTGAAAATAAAAATAAAATCCTTAAATTGAAA
CTTGGCATCAGTGAAAAGAATGTCTTGATCTCTTGGCCAAGCTCTTGAGT
ATCAAACCATCGTTGAGACCAACCATTGGTGACATTCAAAGACACCCCTG
GCTTTCGGCTTCTCATAAGAGGTGCTATCCTGTATTCCTTTCTTACTGGA
GAGTTCCTTCCACAAGTTGGTTCTTGGAAAGAAAATTTGTCCGTCTCTAA
TGACTTTGGTACTACAATCATGCCATCATCTCCGGACAACCTTTGTAATT
CCTATTGTGGAACACCGGAATATATGGCACCAGAGGTCCTGCGTGGAGTT
AAGCTCATCAGTTACAAACCGTACAATCCTTTCAAGGCCGATATGTGGAG
TTTAGACTTGAAACCAGAAAACGTCTTGATTGACCGAAATGGTATCGCTA
AGATCTCAGGTTGCTATCAAAATAATGAAGAAAGCAAGCTGCTCTCAAAC
CTTCGAAAGGGAAGTGAGTTGCATGCTAAAACTGACTGGCTGTCGGAACG
TTGTCCAGTTATTCAGATACTTCACCGGAGAAAACCATGTTTACTTGGTG
ATCGAACTTTGTACTGGAGGTGACTTGATCACACATTTCACCAACAGCCA
GAAAATTAACGTAAAGAAAATTTTTCAACAGATTGCTGATGGCGTGCAGC
AAATGCACGTAAAGGGCATCGCCCACCGATGAGTGGTATAGCACACGAGT
GTTTACAGCATGGTTTTGTTCTGGGACGGAGTCTAGGCGAGGGAGGATAC
GGGCAAGTCAAACAAGCGTCGTACGTGAACTTTAACTGCCCCAATGATAC
TCTCGCCAAGAGGCTCCGCTCCTTTGGACACAGTGACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032586XLOC_032586Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051425-exon-scaffold_201-1575043694:576437..576707TCONS_00051425-exon-scaffold_201-1575043694:576437..576707Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1575043694:575889..576157TCONS_00051425-exon-scaffold_201-1575043694:575889..576157Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1575043694:575609..575664TCONS_00051425-exon-scaffold_201-1575043694:575609..575664Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1575043694:575273..575423TCONS_00051425-exon-scaffold_201-1575043694:575273..575423Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1575043694:574565..574647TCONS_00051425-exon-scaffold_201-1575043694:574565..574647Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1575043694:574153..574253TCONS_00051425-exon-scaffold_201-1575043694:574153..574253Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1575043694:573754..573903TCONS_00051425-exon-scaffold_201-1575043694:573754..573903Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1575043694:573254..573301TCONS_00051425-exon-scaffold_201-1575043694:573254..573301Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1575043694:572788..573120TCONS_00051425-exon-scaffold_201-1575043694:572788..573120Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1510915933:576437..576707TCONS_00051425-exon-scaffold_201-1510915933:576437..576707Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1510915933:575889..576157TCONS_00051425-exon-scaffold_201-1510915933:575889..576157Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1510915933:575609..575664TCONS_00051425-exon-scaffold_201-1510915933:575609..575664Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1510915933:575273..575423TCONS_00051425-exon-scaffold_201-1510915933:575273..575423Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1510915933:574565..574647TCONS_00051425-exon-scaffold_201-1510915933:574565..574647Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1510915933:574153..574253TCONS_00051425-exon-scaffold_201-1510915933:574153..574253Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1510915933:573754..573903TCONS_00051425-exon-scaffold_201-1510915933:573754..573903Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1510915933:573254..573301TCONS_00051425-exon-scaffold_201-1510915933:573254..573301Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1510915933:572788..573120TCONS_00051425-exon-scaffold_201-1510915933:572788..573120Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1491911889:576437..576707TCONS_00051425-exon-scaffold_201-1491911889:576437..576707Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1491911889:575889..576157TCONS_00051425-exon-scaffold_201-1491911889:575889..576157Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1491911889:575609..575664TCONS_00051425-exon-scaffold_201-1491911889:575609..575664Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1491911889:575273..575423TCONS_00051425-exon-scaffold_201-1491911889:575273..575423Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1491911889:574565..574647TCONS_00051425-exon-scaffold_201-1491911889:574565..574647Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1491911889:574153..574253TCONS_00051425-exon-scaffold_201-1491911889:574153..574253Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1491911889:573754..573903TCONS_00051425-exon-scaffold_201-1491911889:573754..573903Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1491911889:573254..573301TCONS_00051425-exon-scaffold_201-1491911889:573254..573301Clytia hemisphaericaexon
TCONS_00051425-exon-scaffold_201-1491911889:572788..573120TCONS_00051425-exon-scaffold_201-1491911889:572788..573120Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051425-proteinTCONS_00051425-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:572788..576707 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0758882	0.113612	0.0295898	0.041915	0.105512	3.27665e-07	0	1.35072e-07	0.121534	0	0	0.0302165	1.76381e-07	0.0314854	0	0.0849046	0.0787449	0.0471084	0.0128358	3.84238e-07	0.0105682	0	0.348048	0	0	0.0822049	0	0.0772581	0	0.0320187
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00051425 vs. Swiss-Prot (Human)
Match: TSSK3 (Testis-specific serine/threonine-protein kinase 3 OS=Homo sapiens GN=TSSK3 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.938e-37
Identity = 90/287 (31.36%), Postives = 153/287 (53.31%), Query Frame = 2 
Query:  134 LQHGFVLGRSLGEGGYGQVKQASYVNFNCPNDTLAKRLRSFGHSDQVAIKIMKKASCSQTF-----EREVSCMLKLTGCRNVVQLFRYF-TGENHVYLVIELCTGGDLITHFTNSQKI---NVKKIFQQIADGVQQMHVKGIAHRDLKPENVLIDRNGIAKISDFG-TTIMPSSPDNLCNSYCGTPEYMAPEVLRGVKLISYKPYNPFKADMWSLGAILYSFLTGEF------LPQV-------GSWKENLSVSNECLDLLAKLLSIKPSLRPTIGDIQRHPWLSAS 925
            L +G+ LG+++GEG Y +VK+A            +K+     H  +VAIK++ K    + F      RE+  +  L   +N++Q++    + +  + LV+EL  GGD+     N   +     K +F+Q+ + ++  H  G+AHRDLK EN L+    + K++DFG   ++P S   L  ++CG+  Y APEVL+G+      P++  K D+WS+G +LY  L          +P++        S+  +LS+S +C DLL +LL     LRP+I ++  HPWL+++
Sbjct:    6 LSNGYQLGKTIGEGTYSKVKEA-----------FSKK-----HQRKVAIKVIDKMGGPEEFIQRFLPRELQIVRTLDH-KNIIQVYEMLESADGKICLVMELAEGGDVFDCVLNGGPLPESRAKALFRQMVEAIRYCHGCGVAHRDLKCENALLQGFNL-KLTDFGFAKVLPKSHRELSQTFCGSTAYAAPEVLQGI------PHDSKKGDVWSMGVVLYVMLCASLPFDDTDIPKMLWQQQKGVSFPTHLSISADCQDLLKRLLEPDMILRPSIEEVSWHPWLAST 268
The following BLAST results are available for this feature:
BLAST of TCONS_00051425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSSK31.938e-3731.36Testis-specific serine/threonine-protein kinase 3 ... [more]
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