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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051429 ID=TCONS_00051429|Name=TCONS_00051429|organism=Clytia hemisphaerica|type=transcript|length=825bp CTTTGAGAATAGACGCTCGAAGGATTTTCTCGCTTTTTCGTGAGAAATAG TAGTATCGATTTGTTTATATTGATCTTTAACGATTGATATTAATTGTTAT AATAATGAGTGGTATAGCACACGAGTGTTTACAGCATGGTTTTGTTCTGG GACGGAGCCTAGGCGAGGGAGGATACGGGCAAGTAAAGCAAGCGTCTTAC GTGAACTTTAACTGCCTCAATGATCCTCTCGCCAAGAGACTCCGCTCCTT AGGACACAGTGACCAAGTTGCtatcaaaataatgaagaaaGCAAGCTGCT CTCAAACCTTCGAAAGGGAAGTGAGTTGCATGCTAAAACTGACTGGCTGT CGGAACGTTGTCCAGTTATTCAGATACTTCACCGGAGAAAACCATGTTTA CTTGGTGATCGAACTTTGTACTGGAGGTGACTTGATCACACATTTCACCA ACAGCCAGAAAATTAacgtaaagaaaatttttcaacagaTTGCTGATGGC GTGCAGCAAATGCACGTAAAGGGCATCGCCCACCGAGACTTGAAACCAGA AAACGTCTTGATTGACCGAAATGGTATCGCTAAGATCTCAGACTTTGGTA CTACAATCATGCCATCATCTCCGGACAACCTTTGTAATTCCTATTGTGGA ACACCGGAATATATGGCACCAGAGGTCCTGCGTGGAGTTAAGCTCATCAG TTACAAACCGTACAATCCTTTCAAGGCCGATATGTGGAGTTTAGGTGCTA TCCTGTATTCCTTTCTTACTGGAGAGTTCCTTCCACAAGTTGGTtcttgg aaagaaaatttgtccGTCTCTAATG Run BLAST on NCBI transcript from alignment at scaffold_201:574565..582668- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051429 ID=TCONS_00051429|Name=TCONS_00051429|organism=Clytia hemisphaerica|type=transcript|length=8104bp|location=Sequence derived from alignment at scaffold_201:574565..582668- (Clytia hemisphaerica) CTTTGAGAATAGACGCTCGAAGGATTTTCTCGCTTTTTCGTGAGAAATAG
TAGTATCGATTTGTTTATATTGATCTTTAACGATTGATATTAATTGTTAT
AATAATGAGTGGTATAGCACACGAGTGTTTACAGCATGGTTTTGTTCTGG
GACGGAGCCTAGGCGAGGGAGGATACGGGCAAGTAAAGCAAGCGTCTTAC
GTGAACTTTAACTGCCTCAATGATCCTCTCGCCAAGAGACTCCGCTCCTT
AGGACACAGTGACCAAGTAAGTTATTAATTGCTCAACTTTCATTGATTTA
TATTCAATACGTTTGTTGCTTTTCCTTCTTTCCTTAAAATTTCTAGCTAG
ACTCTAATAGACGCTAGATTCTACTGCCCAGACAATCATCACGCCAAAAA
GCTCAGATTATAGTATAGGTTTTGAATAGTAAAACAAATATTGTTGATAA
CGTCTTTAAATAACCGGGTTATTGATTATTCGTTGGTTTTGCGAGTGCAA
TGTGTTTCTTCTTAATAATTTCATAATTTTTTTCCCATTTAAAGGTTGCT
ATCAAAATAATGAAGAAAGCAAACTGCTCTCAAACCTTTGAAAGGGAAGT
GAGTTGCATGCTAAAACTGACTGGCTGTCGGAACGTTGTCCAGTTATTCA
GATACTTCACCGGAGAAAACCATGTTTACTTGGTGATCGAACTTTGTACT
GGAGGTGACTTGATCACACATTTCACCAACAGCCAGAAAATTAACGTAAA
GAAAATTTTTCAACAGATTGCTGATGGCGTGCAGCAAATGCACGCAAAGG
GCATCGCCCACCGGTAAGTTTAAGAACCTATTGCTGGTGATGTCTGCCTG
TTCGTCTTTCGATGTGGTGACACTCAAATCAAGTCATATTTTTGCACTTG
GTCATAGCACCCTGAACTGATCATCCTAGATGACTGTATACAGTATGTAT
CATAGGTTTCAATACGATGACACGGAGTCGATTTGAACGGTTTTGGGGTT
TTTCAAAACTTTCATGGAGCATTGTTAAAAAGAAGAATTTTTTACAAATT
AAATCTATTCATTTCATGTTTTTCAGAGACTTGAAACCAGAAAACGTCTT
GATGGACCGAAATGGTATCGCTAAGATCTCAGGTACGTTTTCCATTCTAA
AGAAATATCGGATCGTTTCTGAATGCCTTTTGGACAATTCTCTCTGTAAA
TTGATAATTAGAAAATAGCATGTAACAGAGACACGATTCCTATAAATTAA
GTCAATTTGAACGAATTCCTTGTGTGATGATTTGAAACTTTAAAATCGTA
TTTTTCAGACTTTGGTACTACAATCATGCCATCATCTCCGCACAACCTTT
GTAATTCCTATTGTGGAACACCAGAATATATGGCACCAGAGGTCTTGCGT
GGAGTTAAGCTCGTCAGTTACAAACCGTACAACCCGTTCGAGGCGTGGAG
TTTGTAAGTCGATCTATTTAATACATTTGTTGTGCGCAGATTTGTAATAC
TTGCGCAGATTTGTAATACCTGTGCAGATTTGTAATACTTTCTGCGCAGA
TTTGTAATACCTGCGCAGATTTGTAATAAACTTTGCGCAAATTTGTAATA
CTTAAGCTGCGCAGAAATGTAATACTTCTCTGCGCAGATTTGTAATTTGG
AATTGATATTTTCATTGGTAACCAAGTTCTATTCATCGAACAAAATGCAT
TAAAAAAGACTTAGAAAATAATACCCAGATAAAGTTGTGATTATTGAGCA
CATCGAATAAATAATCAATTAATATTTCTTTTCTAAGCAGTGCTTTTATA
AGAAATTTATCTGGTAATATAGAAATTGTTTATGAGAATAGCGCGGACAT
AACTTTTTATAAGAACTGCTTTTATAAGAAACTAATTAATAACTCGTAAA
ATAAAAATTATTTCTTGTCGGTAACTATTTATTTCGAAGTAAACAAGGTG
CGAAGAATAACATGAACATGTACATTTTTTATAAGAACTGCTTTTATAAG
AAACTAATTTCCTTTGGATCAAAAGATATTGATTAGTTTCTTATAAAGTT
GATACTTATAAGAAAAATGAAAATACTTAAAATAAGCAAATCCCATATTT
GTATTGAAAGAACCAAGCGCCGAAAGCCAATTTCCATTAGATTAAAAGAT
ATTGTTTCGTTTCTTATAAAGTTGATGCTTATAATAAAAATGAAAATATT
AAAATTATTCCCAATCACATGTTTGTATTGAAAGAACCAACTGCCAAAAG
CCAATTTTTATTAGATTAAAATATATTGATTCGTTTGTTATAAAGTTAAT
GTTCATACAAAAGATCTACAACCTTTGTGTGATTTTCTGATTTTTTTCTG
AGTCTTTTTTTCGAAACTTTTCTTCGTAAGAAACATATGCCCTCGAAGTA
AAAATCTAAATTCCAAATTACAAATCTGCGCAGAGAAGTATTACATTTCT
GCGCAGCTCAAGTATTACAAATTTGCGCAGGTATTACAAATCTGCGCAAG
TATTACAAATCTGCGCAGAGAAGTATTACATTTCTGCGCAGCTCAAGTAT
TACAAATTTGCGCAGGTATTACAAATCTGCGCAAGTATTACAAATCTGCG
CACAACACATTTACAATTTTATTCGAAAATTATAGATAGGCCAACTTATG
AGACTTGCCTCGGCGAAATGTTTTATGTTTTCTAAATCCCATCCTTAAAA
GAAGATAATTACAAAGGAATGATCCAAAGTAGACCCTAACACATTCTTTT
TAGGGCAAAATAGGCTATATTGTAAACAAAAAATTTTCCCAACAGCGAAA
CTTCCGAATTTGGAGCTGCGAGCCGCAAAATAAAATTCTGCAAAAATTTC
TTCCATTAAAAGTAGCTCAGTTTTTCTCTCCGTATAACTATTTTTCATNA
GTTTTTTGTATGAAGATAAAGGGTGATAATTTTTTTTGTATGTTTTATTC
TCTGTATAAAATTTTATACTTTTCTCTCAATTTTAGAGGCGCTATCCTGT
ATTCCTTTCTTACTGGAGAGTTCCTTCCACAAGTTGGTTCTTGGAAAGAA
AATTTGTCCGTCTCTAATGGTAAGTTTAAAGGTTTTTCGTTCAAGTGGAT
GACTTCTACAATTCCTGGAGAATATTTGGGGGCCAGTACTGCCAAACCCT
GAGCTATAGGAGGAAAGTCTGGCAGTATTAGCACTTTTAACAAAAAACTG
GATTTTAGCGAATTTTTGTTGTTGCTGACCCAAAAATGGAGTCGGAAAAA
TATAGAAAGATAAAGCCAATTTTATTTGCAGTTGAAAAATTGTGACATTC
TAAAGATTTTCCTGGTCCATTTTTTGCTTGCGATTAAAATGACTAAGTAT
AGAGTCCACTTAGATTGAACTTTATTCTTTATATTCATTGTTTAGAATGT
CTTGATCTCTTGACCAAGCTCTTGAGTATCAAATCATCGTTGAGACCAAC
CATTGGTGACATTCAAAGACACCCCTGGCTTTCGGCTTCTCATAAGGTAT
GGTGATCTTCTAATAAAAATTTATCTTCATTGAAATATTTTCGAAATTAC
AAACTCTGCATTGATGATCTTATAGAAAATTGTTCCAACTGGCTGATTTA
TTTATTTGTAAAAACACTTCATTTAACCTACGAATGGATAACAATTTTCG
CCAAATAACCCTTTTTTATCTGAATGATTTAACCATAACGTAAAATCATT
AAATCATTAATATTGAAACTTCTTTTCTAGANTTATCTGAATGATTTAAC
CATAACGTAAAATCATTAAATCATTAACATTGAAACTTCTTTTCTAGGAA
CCCGCAATCAAACAAATAGAGTTGATCAACAATATGATCAAAGAATTTGA
TTGTTTGGTGGATAGAAAAAAGGCTCTTAAAGAAGAGTTAGCCGAAGCTG
AAAATAAAAATAAAATCCTTAAATTGAAACTTGGCATCAGTGAAAAGGTG
AGAAAATGTCATTTTTTTCGCGATATCTCAGTCTGTTAAAATGAACGAGA
GCAAAAAAATACAAAAAGGTTTTTCCCAGATTCCCATATACTTTTAGTCC
AAGTGTCTTTTATAGTATGTTGTTACAGTAGCGTAGACAGGAGGGGCGCA
AAATTTGTGTAGGAGAGCAAACTTTCATGACACTGTGATTATCTATTCAT
AATGTAAAAAGATAATTAGAGTGTCATTAAAATCTGCTCTCCTACATAAA
TTTTGCGCCCCTCCTGTCTACGCTACTGTTTGTAAGCCCTCGTATTATTT
CAAAGCGATTTACGCTAGACATAATCGAATAATTTACGCCAGATTAAGTT
TCACATTTTCGAAAACGAAAATAAATTCACGCGAGATTTTCGAAATTGTG
CTTTCCGACGCAAAGCTTATAATTTATTTCTAACAATGTTCTAGCAACCA
TCTCGCTACAAAGTCATCGTTCAACAAGATCTAGACAAAAAGGTGAGTTT
ACTTTCTTAAATGTTAGCACTTTTCGCTTTTCAGGAGGAATTAAGTTTTT
AGTGTAATTTCCTGAGAAACTGCCGTATTTTTTTCCTACAGTAAAAACAA
CTGATAATTTATTTTCTCATAGATGCCGGCCACTGCCAAAGAAGCTAGCG
ACGAAATGGCCAAAATGATGAACAATCTCGCCCATAATATCAAGAGAGCA
AATATCTTATTAAAAAGACAAAAAGCAGATTTGCAGAAAATCAACAGCGA
AAATGTTCTTCTCGGACACAAATTTTTTGAGAAGATACTAAGAAACAACG
CCGCTTCAAATCCTCAATTCCCAAATGGGCATCATTTTCCATCCACGGAA
TTATGGGAATGAAAACCTCCAAAAAATATTCAAATTTGTAAATAGTTTTT
TTTAAATCTATATTAATTTTGTAAATTGTTTTATTTTATCTTTACTTATT
ATGGTGTCACTTCAAAAAAATATAAATCCCCACAAAAACTCTTCAATACG
CTAAACAAAATAATTTTTTAATTTCATTCGTTCCGCATTTAAGCTGGTTG
ATGTTTAATTTAGAAAGAAATGACTCAGTATTAAAATTCTTAGAACCAAG
AAACTGTAATAGACCCGGTGGGACAAAGTCAAAGTTTCTTCCCCGGTGGA
AAGAAATACCCTAAAATTTCAGCCCAACCCAGAAACTGACTTTCATTTAA
TCCCAATTTTAAATTCAATGGAGAAAATTGTCTTCCAAATCCATCCAACT
GGATTTTTTTAGCTGGGAACAATATACAGTTTATATTTCCTTTTTGATAA
AAGTTTTCAACACCAATCTTGGAAAAAAGTTCCACCGGGCGGCCTGTGAG
AAAGGGGTGTCTTAGAGGTCGTAATTTCTCTGTTCATTGTCCTCTCCATC
TCGCCCTCCATAAGATACACCCCTGTGTTATAGACCCGCTGGAACCCCCA
CCCACTGGAAAATTTAGTCTCGGGTTGGAAAAAAACCTGTAATTTCAACC
CCACTGGGAAATCCACTTTTAGTTCATCCCTGCTCGAAATTCAATGTTGG
AATCCAAAACCATCTGCACTGGATTTTTTAAACATTTGAACGATAAAATT
TCTATTCCCACTGAAGAAAAAAGTTCCACCGGGGCTGTGAGACAAGGGTG
TTAAGATAAATTTTTTCTCTCGAGGGTTTTAAGGCAGGCTCACACTTTCA
CAAAAATGCCATTTTTTCCTTCAAGGAACACATTAAGTTTACGTTGAATT
TGGATCCGACCTTGAGAATACTTTAAGAATATCAATTAAGATTGGAATTG
CCGATCTTATAAAAAAGCTAGCGAGGGATATTTGCGACTAAGATAAAGAG
CAAAAACATTTGAATATCAGAATGCCGAACGAGAAATGAAAGAAAGGCGT
CACTTTTTTCAATATGTTAAAAATTGACGTCAGTTGAAAAATTTATTTGA
CGTCAAATAAAAAAATTCTTAATAGAAAGAAAACTGCCAAGAAAAATTAT
CGTACTTCAACCCACCTTCGAGAATAGACGTTCGAAGGATTTTTCTCGCT
TTTTCGTGAGAAATAGTAGTATCGATTTGTTCATATCAATCTTTAACGAT
TGATATTAATTGTTATAATAATGAGTGGTATAGCACACGAGTGTTTACAG
CATGGTTTTGTTCTGGGACGGAGTCTAGGCGAGGGAGGATACGGGCAAGT
CAAACAAGCGTCGTACGTGAACTTTAACTGCCCCAATGATACTCTCGCCA
AGAGGCTCCGCTCCTTTGGACACAGTGACCAAGTAAGTTATTAATTGCTC
AACTTTCATTGCTTTATATTCAATACGTTCGTTGCTTTTCTTTCTTTCCC
TAATATTTTTAGCTAGACTATAATAGACGCTAGATTCTACTGCCCAGACA
ATCATCAAGCCAAAAAGCTGAGATTATAGTATAAGTTTTGAATAGTAAAA
CAAAGATTGTTGATAACGTCTTTAAATAAACGGGTTATTGATTATTCGTT
GGTTTTGCAAGTGCAATGTGTTTCTTCTTAATAATTTCATAATTTTTTTT
CCCATTTAAAGGTTGCTATCAAAATAATGAAGAAAGCAAGCTGCTCTCAA
ACCTTCGAAAGGGAAGTGAGTTGCATGCTAAAACTGACTGGCTGTCGGAA
CGTTGTCCAGTTATTCAGATACTTCACCGGAGAAAACCATGTTTACTTGG
TGATCGAACTTTGTACTGGAGGTGACTTGATCACACATTTCACCAACAGC
CAGAAAATTAACGTAAAGAAAATTTTTCAACAGATTGCTGATGGCGTGCA
GCAAATGCACGTAAAGGGCATCGCCCACCGGTAAGTTTAAGAACCTATTG
ATGGTGATGTCTGCCTATTTGTCTTTCGATGTGGTGACACTCAAATCAAG
TCATATTTTTGCACTTGGTCATAGCACCCTTAGGTTTCAATACGATGACA
CGGAGCCGATTTGAACAGTTTTGGGGTTTTTCAAAATGTTCATGGAGCAT
TGTTAAAAAGAAGAATTTTATACAAATTAAACCTATTCATTTCATGTTTT
TCAGAGACTTGAAACCAGAAAACGTCTTGATTGACCGAAATGGTATCGCT
AAGATCTCAGGTATGTTTTCCATTCATTTTAAAGCAATTCAGGATCGTCT
CTAAATGCCTTTGTACAATCCCCCCTGTAAATTAAATAAATATGAAATAG
CGTGTAACAGAGGCAGGCACCGATTCCTATGAAATAGGTCAATTGAACCA
ATTCCGTGTGTGATGATTAAAAACTTTTTAATCGTATTTTTTCAGACTTT
GGTACTACAATCATGCCATCATCTCCGGACAACCTTTGTAATTCCTATTG
TGGAACACCGGAATATATGGCACCAGAGGTCCTGCGTGGAGTTAAGCTCA
TCAGTTACAAACCGTACAATCCTTTCAAGGCCGATATGTGGAGTTTGTAA
GTCAATCTGTTTTAATACATTGTCAATTTTATTCGAAAAGCTAACAGTAG
GTCTCTCTGTGTCATTATGAATATGCCAACTTATTACGAGACTTGCCGCG
GTGAAATTTCATCATTTTTTAATTCCACCCTGAAAAGAAAAAAATTATAA
AGGAATGATCCAAAGTCAGAAAACGCGGGAAAGAGTTAGGGCGTCAGGGC
TGTTAACGGGAAGAATAGCGGTGGTAGAGTTTTGGAAGACTGTAAACATC
TCCGCCACTGCTTACTCCACCCGAATTTATCACGCCTCTCCTAAACTATT
CCCTTTTTTTAGTGATCTTGTGTAGACGATAGGATCGTCTACCCTAACAT
ATTCATTTTTTCAAAAATTTAATGAATCTGCGGCCTTATCAGATATTTTC
TGAACCTGAAAAAAGAAGTCATNCATATTCATTTTTTCAAAAATTTAATG
AATCTGCGGCCTTATCAGATATTTTCCGAACCTGAAAAAAGAAGTCATTT
GTAGCCTGAATGATGAGTCAAATTGGGGTCTATAGAATATATCTTAAATT
GGTTGTAGCAGGTCACTTTTTTTTAAAGATTTTTTCTCTGTAAAAAATTC
ATTTTTTTCTCTCAATTTTAGAGGTGCTATCCTGTATTCCTTTCTTACTG
GAGAGTTCCTTCCACAAGTTGGTTCTTGGAAAGAAAATTTGTCCGTCTCT
AATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00051429-exon-scaffold_201-1575043694:582403..582668 | TCONS_00051429-exon-scaffold_201-1575043694:582403..582668 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1575043694:575889..576157 | TCONS_00051429-exon-scaffold_201-1575043694:575889..576157 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1575043694:575609..575664 | TCONS_00051429-exon-scaffold_201-1575043694:575609..575664 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1575043694:575273..575423 | TCONS_00051429-exon-scaffold_201-1575043694:575273..575423 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1575043694:574565..574647 | TCONS_00051429-exon-scaffold_201-1575043694:574565..574647 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1510915933:582403..582668 | TCONS_00051429-exon-scaffold_201-1510915933:582403..582668 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1510915933:575889..576157 | TCONS_00051429-exon-scaffold_201-1510915933:575889..576157 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1510915933:575609..575664 | TCONS_00051429-exon-scaffold_201-1510915933:575609..575664 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1510915933:575273..575423 | TCONS_00051429-exon-scaffold_201-1510915933:575273..575423 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1510915933:574565..574647 | TCONS_00051429-exon-scaffold_201-1510915933:574565..574647 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1491911889:582403..582668 | TCONS_00051429-exon-scaffold_201-1491911889:582403..582668 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1491911889:575889..576157 | TCONS_00051429-exon-scaffold_201-1491911889:575889..576157 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1491911889:575609..575664 | TCONS_00051429-exon-scaffold_201-1491911889:575609..575664 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1491911889:575273..575423 | TCONS_00051429-exon-scaffold_201-1491911889:575273..575423 | Clytia hemisphaerica | exon |
TCONS_00051429-exon-scaffold_201-1491911889:574565..574647 | TCONS_00051429-exon-scaffold_201-1491911889:574565..574647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_201 | supercontig | scaffold_201:574565..582668 - |
Blast
BLAST of TCONS_00051429 vs. Swiss-Prot (Human)
Match: TSSK4 (Testis-specific serine/threonine-protein kinase 4 OS=Homo sapiens GN=TSSK4 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 1.481e-31 Identity = 76/239 (31.80%), Postives = 118/239 (49.37%), Query Frame = 3
Query: 132 QHGFVLGRSLGEGGYGQVKQASYVNFNCLNDPLAKRLRSLGHSDQVAIKIMKKASCSQTF-----EREVSCMLKLTGCRNVVQLFRYFTGENHVYLVIELCTGGDL---ITHFTNSQKINVKKIFQQIADGVQQMHVKGIAHRDLKPENVLIDRNGIAKISDFG-TTIMPS------SP--------DNLCNSYCGTPEYMAPEVLRGVKLISYKPYNPFKADMWSLGAILYSFLTGEF 779
++G+ +G+++G G YG V +A Y + VA+KI+ K S + RE+ M K+ + ++ +R + VY+++EL GGD+ I + + K F Q+ G+ +H K I HRDLK EN+L+D+ KISDFG ++PS SP +L +YCG+ Y PE+LRG+ PYNPF +D WS+G ILY+ +
Sbjct: 22 EYGYEVGKAIGHGSYGSVYEAFYTKQKVM----------------VAVKIISKKKASDDYLNKFLPREIQVM-KVLRHKYLINFYRAIESTSRVYIILELAQGGDVLEWIQRYGACSEPLAGKWFSQLTLGIAYLHSKSIVHRDLKLENLLLDKWENVKISDFGFAKMVPSNQPVGCSPSYRQVNCFSHLSQTYCGSFAYACPEILRGL------PYNPFLSDTWSMGVILYTLVVAHL 237
The following BLAST results are available for this feature:
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