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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051435 ID=TCONS_00051435|Name=TCONS_00051435|organism=Clytia hemisphaerica|type=transcript|length=1417bpRun BLAST on NCBI protein sequence of TCONS_00051435-protein >TCONS_00051435-protein ID=TCONS_00051435-protein|Name=TCONS_00051435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp MASALRNCDPELRNYLVDHHVPELFEALMCALTVNQPEDGRQFIIECILQRun BLAST on NCBI transcript from alignment at scaffold_201:690821..706842- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051435 ID=TCONS_00051435|Name=TCONS_00051435|organism=Clytia hemisphaerica|type=transcript|length=16022bp|location=Sequence derived from alignment at scaffold_201:690821..706842- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_201:690821..706842- >TCONS_00051435 ID=TCONS_00051435|Name=TCONS_00051435|organism=Clytia hemisphaerica|type=CDS|length=13350bp|location=Sequence derived from alignment at scaffold_201:690821..706842- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051435 vs. Swiss-Prot (Human)
Match: FXL13 (F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3) HSP 1 Score: 176.407 bits (446), Expect = 7.138e-48 Identity = 107/350 (30.57%), Postives = 179/350 (51.14%), Query Frame = 2
Query: 461 KKNKRIMLAEKLTSADRYYDLKICGRSFKAWLGWKRWEIDRQTTFVNSLTKIVNLSLKRLIFNQWSSISAESRKTREYFEKIERGELIDPTEINTEK--------------------------------KDHISELPKLLAIRIFMFLELPDLVACSKICRSWKEITQANILWSRIDLANSDKGLITGRAIGILLQKCRPFICHLNMRSCDFLSARTLTMIGDCKNLQDLNLSQCKAVCDDVIKDITVGCPSLLYINLSDTEISDASLRHISRNCNGLQYLNIARCVNITNRGLHYLSSGKGSQKLIYLDMSACDQITREGFRMLAKGCVRLDKLLLNEMHSLTDECIEV 1414
+ N+ ++LAEK+ A Y+ ++ F W + + ++ + + +I+ +I +W R T + K + ELI E+ +K K IS LP+ ++IF +L L D++ C ++ +W +TQ N LW+ ID + S K +I + I LQ+ R + LN R C L +T + C+NLQ+LN+S C D+ ++ I+ GCP +L +NLS+T I++ ++R + R+ + LQ L++A C T++GL YL+ G G KLIYLD+S C QI+ +GFR +A C + L +N+M +LTD C++
Sbjct: 30 RTNENVVLAEKMNRAVTCYNFRLQKSVFHHWHSYMEDQKEKLKNILLRIQQIIYCHKLTIILTKW-------RNTARHKSKKKEDELILKHELQLKKWKNRLILKRAAAEESNFPERSSSEVFLVDETLKCDISLLPERAILQIFFYLSLKDVIICGQVNHAWMLMTQLNSLWNAIDFS-SVKNVIPDKYIVSTLQRWRLNVLRLNFRGC-LLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDNCVKA 370 The following BLAST results are available for this feature:
BLAST of TCONS_00051435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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