TCONS_00051436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051436
Unique NameTCONS_00051436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051436 ID=TCONS_00051436|Name=TCONS_00051436|organism=Clytia hemisphaerica|type=transcript|length=545bp
tcaaaacaccagcATCCATCATGCTGACTAAACAACCGTCAAAGGCGGAA
GCAAAGATATTGATAAACAGAAGAACAAGGAATCGCGTAGAACGAAAATC
GATACTTGAATCGGATTGGTTGGTAGGAGATATTCCATTACTTGTTATGT
TCGCTATCGTTTTAATAACATCTGGTGCAGGGCAAGTGTTTCTCGATTTA
TCTCCGATCACTAAAGACAACAAAGGTTGACCACCAACCAAAACTAATGA
CATAATGGTCATAAGAATGACAATAAACACATGATTCTGTCGTTTGTCAG
TAATGATGCCCCAAAAAGGACCAGCAAAAGTCATCCCAAGTAGACGAAGA
CCTGTCACCAGACCAGCTTCTACTTTGTTCAATCCGACGCCTACGAGGAA
TGGTACCATGTATGGTTTGAAAGCGCCGTCTATTCCAACCGTCAGGAAGA
AGCATATTTTTGCAGGTAACATGTACACATCTACTTTGAAAAGTTCTTTC
AGTCGTTTGCCCGCCATCtcgtttttttcctttttacgATTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00051436-protein

>TCONS_00051436-protein ID=TCONS_00051436-protein|Name=TCONS_00051436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MAGKRLKELFKVDVYMLPAKICFFLTVGIDGAFKPYMVPFLVGVGLNKVE
AGLVTGLRLLGMTFAGPFWGIITDKRQNHVFIVILMTIMSLVLVGGQPLL
SLVIGDKSRNTCPAPDVIKTIANITSNGISPTNQSDSSIDFRSTRFLVLL
FINIFASAFDGCLVSMMDAGVL
Run BLAST on NCBI

transcript from alignment at scaffold_201:24480..25024

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051436 ID=TCONS_00051436|Name=TCONS_00051436|organism=Clytia hemisphaerica|type=transcript|length=545bp|location=Sequence derived from alignment at scaffold_201:24480..25024 (Clytia hemisphaerica)
ATAAAATcgtaaaaaggaaaaaaacgaGATGGCGGGCAAACGACTGAAAG
AACTTTTCAAAGTAGATGTGTACATGTTACCTGCAAAAATATGCTTCTTC
CTGACGGTTGGAATAGACGGCGCTTTCAAACCATACATGGTACCATTCCT
CGTAGGCGTCGGATTGAACAAAGTAGAAGCTGGTCTGGTGACAGGTCTTC
GTCTACTTGGGATGACTTTTGCTGGTCCTTTTTGGGGCATCATTACTGAC
AAACGACAGAATCATGTGTTTATTGTCATTCTTATGACCATTATGTCATT
AGTTTTGGTTGGTGGTCAACCTTTGTTGTCTTTAGTGATCGGAGATAAAT
CGAGAAACACTTGCCCTGCACCAGATGTTATTAAAACGATAGCGAACATA
ACAAGTAATGGAATATCTCCTACCAACCAATCCGATTCAAGTATCGATTT
TCGTTCTACGCGATTCCTTGTTCTTCTGTTTATCAATATCTTTGCTTCCG
CCTTTGACGGTTGTTTAGTCAGCATGATGGATgctggtgttttga

Coding sequence (CDS) from alignment at scaffold_201:24480..25024

>TCONS_00051436 ID=TCONS_00051436|Name=TCONS_00051436|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_201:24480..25024 (Clytia hemisphaerica)
ATGGCGGGCAAACGACTGAAAGAACTTTTCAAAGTAGATGTGTACATGTT
ACCTGCAAAAATATGCTTCTTCCTGACGGTTGGAATAGACGGCGCTTTCA
AACCATACATGGTACCATTCCTCGTAGGCGTCGGATTGAACAAAGTAGAA
GCTGGTCTGGTGACAGGTCTTCGTCTACTTGGGATGACTTTTGCTGGTCC
TTTTTGGGGCATCATTACTGACAAACGACAGAATCATGTGTTTATTGTCA
TTCTTATGACCATTATGTCATTAGTTTTGGTTGGTGGTCAACCTTTGTTG
TCTTTAGTGATCGGAGATAAATCGAGAAACACTTGCCCTGCACCAGATGT
TATTAAAACGATAGCGAACATAACAAGTAATGGAATATCTCCTACCAACC
AATCCGATTCAAGTATCGATTTTCGTTCTACGCGATTCCTTGTTCTTCTG
TTTATCAATATCTTTGCTTCCGCCTTTGACGGTTGTTTAGTCAGCATGAT
GGATgctggtgttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032590XLOC_032590Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051436-proteinTCONS_00051436-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051436-exon-scaffold_201-1491911889:24480..25024TCONS_00051436-exon-scaffold_201-1491911889:24480..25024Clytia hemisphaericaexon
TCONS_00051436-exon-scaffold_201-1510915933:24480..25024TCONS_00051436-exon-scaffold_201-1510915933:24480..25024Clytia hemisphaericaexon
TCONS_00051436-exon-scaffold_201-1575043694:24480..25024TCONS_00051436-exon-scaffold_201-1575043694:24480..25024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:24480..25024 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00503	0.388382	1.32383	0.773617	0.323829	0	0.280999	0.130335	0	0.110213	0	0	0.0900892	0.823204	0.53961	0.699616	1.40118	0.487464	0.31596	0.117454	0.438341	0.587664	1.28032	0.765034	0	0	1.59261	0.903695	0.555989	0.516274
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024989MFS_assoc_dom
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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