|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051437 ID=TCONS_00051437|Name=TCONS_00051437|organism=Clytia hemisphaerica|type=transcript|length=1093bp
atcctgtaaaaacattaaaaaaatatattggcacataaaatgaataaaat
caaataacAAAATTATCTCCCACCCAGAATTCCCTTTGTcctcatcaaaa
attttaattcttcTTATCTTTAAGCatctaaaagtaaaattttttacaat
ttaaccaaaaaaaaatatttttattatttcacaCCAAATCACTCCATGAA
CAGGATTTCTCAAGCTTGTGTTGGCATTTCtgttttatcattgtttctCT
TAGTCGTTAGATTAGCCTGATCCTTTTGTTGATTACATAGTTTGATGAAA
ATTACGACCAATAGGACGATACTCCATGCTGTTGCCAACAGACCGAAGTA
TTTAAAAGTAGCCTGTCCACCGTAACGGCTGAACATTTGTCCACCTATGA
TATTTGCTGCAATAAAGCCAACACCGAAACACGTAGTATTCATAATCGAT
AGCATAGTGGTGTGAATTCGAGGGTCTGTAttacttttgatgtataaaac
CTGTGTTACTAAACCGAGACCATACCCTAAAGTCTGCAACGTGTGGATCG
GTATGGAGAGCCATGGGTTGCTTATGAATGCGAATGATAGAAAACGAACG
ACGTAAGTTAAGCAAGCTAGACAAAGGGCATTCCAAGGTCCTCTTAACAG
TTTAATCAACTTAGCAGCCAGAAACATGAAGAGTGAAGCGCAAAAAGCGG
CTACACCAAAAGTTATACCAACTAGTGTAGTTGAACCATCAACCTCTTTG
ATCCGTAAAGCAGTAAACCCAACATAAACACCTTGGAGTGTTCCTAATAC
AAAAACTGTAAACAGGAATAAGATCATCTCGAATTTTTTCAGCGTTTGGA
AAACGATTTCTTTTAAGGGCGTTTCGTCGACATCGACTTCGGGCACTTTC
TCTATTGTATTGCTCTTGGATTCTTTAAAGGTTTTCAACTCGGAAGGTTC
GGCAGCTTCATTTTCCCCAGTCGATTATCTAAACAAGAAAGGACTCGCTA
TCGCTAAACCAATCAAGTACAAACTCAAAACCACAAACGCTCCAGCAAAA
CAGTTCACTTTGTCCGTATGCGGAAATACATCGGACAGGGATC Run BLAST on NCBI protein sequence of TCONS_00051437-protein >TCONS_00051437-protein ID=TCONS_00051437-protein|Name=TCONS_00051437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MILFLFTVFVLGTLQGVYVGFTALRIKEVDGSTTLVGITFGVAAFCASLF
MFLAAKLIKLLRGPWNALCLACLTYVVRFLSFAFISNPWLSIPIHTLQTL
GYGLGLVTQVLYIKSNTDPRIHTTMLSIMNTTCFGVGFIAANIIGGQMFS
RYGGQATFKYFGLLATAWSIVLLVVIFIKLCNQQKDQANLTTKRNNDKTE
MPTQA Run BLAST on NCBI transcript from alignment at scaffold_201:25115..26207 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051437 ID=TCONS_00051437|Name=TCONS_00051437|organism=Clytia hemisphaerica|type=transcript|length=1093bp|location=Sequence derived from alignment at scaffold_201:25115..26207 (Clytia hemisphaerica)
GATCCCTGTCCGATGTATTTCCGCATACGGACAAAGTGAACTGTTTTGCT
GGAGCGTTTGTGGTTTTGAGTTTGTACTTGATTGGTTTAGCGATAGCGAG
TCCTTTCTTGTTTAGATAATCGACTGGGGAAAATGAAGCTGCCGAACCTT
CCGAGTTGAAAACCTTTAAAGAATCCAAGAGCAATACAATAGAGAAAGTG
CCCGAAGTCGATGTCGACGAAACGCCCTTAAAAGAAATCGTTTTCCAAAC
GCTGAAAAAATTCGAGATGATCTTATTCCTGTTTACAGTTTTTGTATTAG
GAACACTCCAAGGTGTTTATGTTGGGTTTACTGCTTTACGGATCAAAGAG
GTTGATGGTTCAACTACACTAGTTGGTATAACTTTTGGTGTAGCCGCTTT
TTGCGCTTCACTCTTCATGTTTCTGGCTGCTAAGTTGATTAAACTGTTAA
GAGGACCTTGGAATGCCCTTTGTCTAGCTTGCTTAACTTACGTCGTTCGT
TTTCTATCATTCGCATTCATAAGCAACCCATGGCTCTCCATACCGATCCA
CACGTTGCAGACTTTAGGGTATGGTCTCGGTTTAGTAACACAGgttttat
acatcaaaagtaaTACAGACCCTCGAATTCACACCACTATGCTATCGATT
ATGAATACTACGTGTTTCGGTGTTGGCTTTATTGCAGCAAATATCATAGG
TGGACAAATGTTCAGCCGTTACGGTGGACAGGCTACTTTTAAATACTTCG
GTCTGTTGGCAACAGCATGGAGTATCGTCCTATTGGTCGTAATTTTCATC
AAACTATGTAATCAACAAAAGGATCAGGCTAATCTAACGACTAAGagaaa
caatgataaaacaGAAATGCCAACACAAGCTTGAGAAATCCTGTTCATGG
AGTGATTTGGtgtgaaataataaaaatatttttttttggttaaattgtaa
aaaattttacttttagatGCTTAAAGATAAgaagaattaaaatttttgat
gaggACAAAGGGAATTCTGGGTGGGAGATAATTTTgttatttgattttat
tcattttatgtgccaatatatttttttaatgtttttacaggat Coding sequence (CDS) from alignment at scaffold_201:25115..26207 >TCONS_00051437 ID=TCONS_00051437|Name=TCONS_00051437|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_201:25115..26207 (Clytia hemisphaerica)
ATGATCTTATTCCTGTTTACAGTTTTTGTATTAGGAACACTCCAAGGTGT
TTATGTTGGGTTTACTGCTTTACGGATCAAAGAGGTTGATGGTTCAACTA
CACTAGTTGGTATAACTTTTGGTGTAGCCGCTTTTTGCGCTTCACTCTTC
ATGTTTCTGGCTGCTAAGTTGATTAAACTGTTAAGAGGACCTTGGAATGC
CCTTTGTCTAGCTTGCTTAACTTACGTCGTTCGTTTTCTATCATTCGCAT
TCATAAGCAACCCATGGCTCTCCATACCGATCCACACGTTGCAGACTTTA
GGGTATGGTCTCGGTTTAGTAACACAGgttttatacatcaaaagtaaTAC
AGACCCTCGAATTCACACCACTATGCTATCGATTATGAATACTACGTGTT
TCGGTGTTGGCTTTATTGCAGCAAATATCATAGGTGGACAAATGTTCAGC
CGTTACGGTGGACAGGCTACTTTTAAATACTTCGGTCTGTTGGCAACAGC
ATGGAGTATCGTCCTATTGGTCGTAATTTTCATCAAACTATGTAATCAAC
AAAAGGATCAGGCTAATCTAACGACTAAGagaaacaatgataaaacaGAA
ATGCCAACACAAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051437-exon-scaffold_201-1491911889:25115..26207 | TCONS_00051437-exon-scaffold_201-1491911889:25115..26207 | Clytia hemisphaerica | exon |
| TCONS_00051437-exon-scaffold_201-1510915933:25115..26207 | TCONS_00051437-exon-scaffold_201-1510915933:25115..26207 | Clytia hemisphaerica | exon |
| TCONS_00051437-exon-scaffold_201-1575043694:25115..26207 | TCONS_00051437-exon-scaffold_201-1575043694:25115..26207 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:25115..26207 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
