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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051438 ID=TCONS_00051438|Name=TCONS_00051438|organism=Clytia hemisphaerica|type=transcript|length=1179bp
TCTTGTAATTTATTGGAAATCTCCTTCAGTTCTTTACTTTGTGTTTCAAG
AAGAGTCTTGCGTTGCTTTAAATCGACATTGCTGATAAGGCTGACAGAGC
ATAACATCGAGGCAGTGAGAAAGTTTATAGAACGATCAATTTCGCTTACA
ATGAAATCCGATTTCTGTTTGTCTGCATTGGTTTGTATCTCAGTGTTTAC
ATCACTACTGTCTTTGAAGAATTTGTTAACTCGTCCAATATATTGCATGA
TATCACAACACAGCATGGTAAATGGTTTGGAGTATGATTTTTCATAATCA
TCCTTTGATAATTGTAATTTGATCTTTCTATTAGTGTTTTTGTATTCAGT
ACGCAATGTTTCTAGCCTTGTAACGCATTCTTTCATCCTCTCAGGGTGTA
TCATATCGACCGGATTGTCATCAATGGTATCTGTGATATNGGTTTGGAGT
ATGATTTTTCATAATCATCCTTTGATAATTGTAGTTTGATCTTTCTATTA
GTGTTTTTGTATTCAGTACGCAATGTTTCTAGCCTTGTAACGCATTCTTT
CATCCTCTCAGGGTGTATCATATCGACCGGATTGTCATCAATGGTATCTG
TGATATCCTCATGAAGTTGCGCCATTAGAAGAAAAAGTTCATTTGTACCT
GTATTTGTTGTATCAGGTGGTGGAGTGTCACGTGGTTTGACATCCATTAG
AGTTGGTTGAGGTGGGTCCACTCTGGTTCGATGTGGAATGATCTCGGTAA
GAGGTGGATCGCCATCAGTTGGAAGTGGTAGGTCGCCTTCAAATAGGGGC
GGATCCGACATTGATGGAAGTGAATCTGTTGATTGAGGTGGAAGTAATTC
CTTGGGTTGATTTGAAGTCGCTTGAAGTGGAGGTGTGGTCTCCTCCCGGT
CTCCTTTGGCTTTTATATTTTACGACCAGTTTTTGAGTACGAGTTGAAGT
CGAATCTCTCCTTCGGTCGTGTTTGCATTGAGGTGTGATTGAACCCCTTG
CTGTTTGAATGTTGGGGCAGAAACAATGAAGGGCGACAAAAAGGCCGTGT
TCGTAACACTTGATGAGTGTGAATGTGTTCAaactaaaagagaaaaattt
gacaaagtCTTACAAAATGTCTCTAAGTCTGAAAagtataagtttgaaaa
atataagtCTGAAAATCTAAgtctaattt Run BLAST on NCBI protein sequence of TCONS_00051438-protein >TCONS_00051438-protein ID=TCONS_00051438-protein|Name=TCONS_00051438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MSDPPLFEGDLPLPTDGDPPLTEIIPHRTRVDPPQPTLMDVKPRDTPPPD
TTNTGTNELFLLMAQLHEDITDTIDDNPVDMIHPERMKECVTRLETLRTE
YKNTNRKIKLQLSKDDYEKSYSKXISQIPLMTIRSI Run BLAST on NCBI transcript from alignment at scaffold_201:36431..37609 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051438 ID=TCONS_00051438|Name=TCONS_00051438|organism=Clytia hemisphaerica|type=transcript|length=1179bp|location=Sequence derived from alignment at scaffold_201:36431..37609 (Clytia hemisphaerica)
aaattagacTTAGATTTTCAGacttatatttttcaaacttatactTTTCA
GACTTAGAGACATTTTGTAAGactttgtcaaatttttctcttttagttTG
AACACATTCACACTCATCAAGTGTTACGAACACGGCCTTTTTGTCGCCCT
TCATTGTTTCTGCCCCAACATTCAAACAGCAAGGGGTTCAATCACACCTC
AATGCAAACACGACCGAAGGAGAGATTCGACTTCAACTCGTACTCAAAAA
CTGGTCGTAAAATATAAAAGCCAAAGGAGACCGGGAGGAGACCACACCTC
CACTTCAAGCGACTTCAAATCAACCCAAGGAATTACTTCCACCTCAATCA
ACAGATTCACTTCCATCAATGTCGGATCCGCCCCTATTTGAAGGCGACCT
ACCACTTCCAACTGATGGCGATCCACCTCTTACCGAGATCATTCCACATC
GAACCAGAGTGGACCCACCTCAACCAACTCTAATGGATGTCAAACCACGT
GACACTCCACCACCTGATACAACAAATACAGGTACAAATGAACTTTTTCT
TCTAATGGCGCAACTTCATGAGGATATCACAGATACCATTGATGACAATC
CGGTCGATATGATACACCCTGAGAGGATGAAAGAATGCGTTACAAGGCTA
GAAACATTGCGTACTGAATACAAAAACACTAATAGAAAGATCAAACTACA
ATTATCAAAGGATGATTATGAAAAATCATACTCCAAACCNATATCACAGA
TACCATTGATGACAATCCGGTCGATATGATACACCCTGAGAGGATGAAAG
AATGCGTTACAAGGCTAGAAACATTGCGTACTGAATACAAAAACACTAAT
AGAAAGATCAAATTACAATTATCAAAGGATGATTATGAAAAATCATACTC
CAAACCATTTACCATGCTGTGTTGTGATATCATGCAATATATTGGACGAG
TTAACAAATTCTTCAAAGACAGTAGTGATGTAAACACTGAGATACAAACC
AATGCAGACAAACAGAAATCGGATTTCATTGTAAGCGAAATTGATCGTTC
TATAAACTTTCTCACTGCCTCGATGTTATGCTCTGTCAGCCTTATCAGCA
ATGTCGATTTAAAGCAACGCAAGACTCTTCTTGAAACACAAAGTAAAGAA
CTGAAGGAGATTTCCAATAAATTACAAGA Coding sequence (CDS) from alignment at scaffold_201:36431..37609 >TCONS_00051438 ID=TCONS_00051438|Name=TCONS_00051438|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_201:36431..37609 (Clytia hemisphaerica)
ATGTCGGATCCGCCCCTATTTGAAGGCGACCTACCACTTCCAACTGATGG
CGATCCACCTCTTACCGAGATCATTCCACATCGAACCAGAGTGGACCCAC
CTCAACCAACTCTAATGGATGTCAAACCACGTGACACTCCACCACCTGAT
ACAACAAATACAGGTACAAATGAACTTTTTCTTCTAATGGCGCAACTTCA
TGAGGATATCACAGATACCATTGATGACAATCCGGTCGATATGATACACC
CTGAGAGGATGAAAGAATGCGTTACAAGGCTAGAAACATTGCGTACTGAA
TACAAAAACACTAATAGAAAGATCAAACTACAATTATCAAAGGATGATTA
TGAAAAATCATACTCCAAACCNATATCACAGATACCATTGATGACAATCC
GGTCGATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051438-exon-scaffold_201-1491911889:36431..37609 | TCONS_00051438-exon-scaffold_201-1491911889:36431..37609 | Clytia hemisphaerica | exon |
| TCONS_00051438-exon-scaffold_201-1510915933:36431..37609 | TCONS_00051438-exon-scaffold_201-1510915933:36431..37609 | Clytia hemisphaerica | exon |
| TCONS_00051438-exon-scaffold_201-1575043694:36431..37609 | TCONS_00051438-exon-scaffold_201-1575043694:36431..37609 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:36431..37609 . |
Blast
The following BLAST results are available for this feature:
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