TCONS_00051439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051439
Unique NameTCONS_00051439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051439 ID=TCONS_00051439|Name=TCONS_00051439|organism=Clytia hemisphaerica|type=transcript|length=443bp
GATGCTGTAACACTCCCCccacaaaaatattgaattgaaaaatatatttg
tatttgaaaaaacaatttatttgaattttccCATTGATCATAATTATATT
CAAGTTGAACACTTGAAGAGTTCTTTAGATAGATCTAGTTCATCAACACA
GTGAATTAATACCAGTGATCTCACAGATCTTGTAGTCAGAGGTTTTACAT
TTTCAGATGAATTTTGGTATTCAACGACAACTTTTCGTATTTTGTCATCC
CGATCCACTTTCACTTCTTTGATAATCCCATANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTCAGATGAATTTTGGTATTCAACGACAACTTTTCGTA
TTTTGTCATCACGATCCACTTTCACTTCTTTGATAATCCCATATTGATAC
GTGGATGAAATGACAGAATCCTGTTTTGTGAACAGAACGATAT
Run BLAST on NCBI

protein sequence of TCONS_00051439-protein

>TCONS_00051439-protein ID=TCONS_00051439-protein|Name=TCONS_00051439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
IVLFTKQDSVISSTYQYGIIKEVKVDRDDKIRKVVVEYQNSSEXXXXXXX
XXXYGIIKEVKVDRDDKIRKVVVEYQNSSENVKPLTTRSVRSLVLIHCVD
ELDLSKELFKCST
Run BLAST on NCBI

transcript from alignment at scaffold_201:43756..44198

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051439 ID=TCONS_00051439|Name=TCONS_00051439|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at scaffold_201:43756..44198 (Clytia hemisphaerica)
ATATCGTTCTGTTCACAAAACAGGATTCTGTCATTTCATCCACGTATCAA
TATGGGATTATCAAAGAAGTGAAAGTGGATCGTGATGACAAAATACGAAA
AGTTGTCGTTGAATACCAAAATTCATCTGAAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTATGGGATTATCAAAGAAGTGAAAGTGGATCGGGATGAC
AAAATACGAAAAGTTGTCGTTGAATACCAAAATTCATCTGAAAATGTAAA
ACCTCTGACTACAAGATCTGTGAGATCACTGGTATTAATTCACTGTGTTG
ATGAACTAGATCTATCTAAAGAACTCTTCAAGTGTTCAACTTGAATATAA
TTATGATCAATGggaaaattcaaataaattgttttttcaaatacaaatat
atttttcaattcaatatttttgtggGGGGAGTGTTACAGCATC

Coding sequence (CDS) from alignment at scaffold_201:43756..44198

>TCONS_00051439 ID=TCONS_00051439|Name=TCONS_00051439|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_201:43756..44198 (Clytia hemisphaerica)
ATCGTTCTGTTCACAAAACAGGATTCTGTCATTTCATCCACGTATCAATA
TGGGATTATCAAAGAAGTGAAAGTGGATCGTGATGACAAAATACGAAAAG
TTGTCGTTGAATACCAAAATTCATCTGAAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTATGGGATTATCAAAGAAGTGAAAGTGGATCGGGATGACAA
AATACGAAAAGTTGTCGTTGAATACCAAAATTCATCTGAAAATGTAAAAC
CTCTGACTACAAGATCTGTGAGATCACTGGTATTAATTCACTGTGTTGAT
GAACTAGATCTATCTAAAGAACTCTTCAAGTGTTCAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032593XLOC_032593Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051439-proteinTCONS_00051439-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051439-exon-scaffold_201-1491911889:43756..44198TCONS_00051439-exon-scaffold_201-1491911889:43756..44198Clytia hemisphaericaexon
TCONS_00051439-exon-scaffold_201-1510915933:43756..44198TCONS_00051439-exon-scaffold_201-1510915933:43756..44198Clytia hemisphaericaexon
TCONS_00051439-exon-scaffold_201-1575043694:43756..44198TCONS_00051439-exon-scaffold_201-1575043694:43756..44198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:43756..44198 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46438	1.08441	1.37332	0.396478	2.45352	1.61567	0.779696	2.18983	1.40539	1.32387	1.68966	0.504871	0.201668	0.942453	0.0860916	0.0923895	0	0.116658	0	0	0.153022	0.429007	0.173838	0.948264	1.46503	1.74334	0.207893	0	0	0.342901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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