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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051442 ID=TCONS_00051442|Name=TCONS_00051442|organism=Clytia hemisphaerica|type=transcript|length=806bp
CTTCCGCTGCGTTGGTTGGTGGTGCGAGTCTGACGATAGTCTCTACTTTC
GATGGATCTGCAGACATACCTTCGCTGGAAAACTTATACCCAAACCAAAT
AACTTCTGGAGCACTCCACTCACATTTCTCTCGTCTAAGTGTTAAGCCGA
GGGATTGTAATCGATCAAGTAGAGCACTCAAATGGAGGTCATGCTCATGT
TGGGTCTCTCCGTAAACTAGCAAATCGTCTTCAATCTGTTCCACACCAAC
GAGGTCTACAATACTTTGTCGCAAACGCTCATGGAACTCTTGACTGGCAG
GTCCAGCACCCATGACAAGACGCTTAAATCGGTAGATGCCTTCGTGCGTG
TAAAAGTTTGTAAGTTCTTTCGATTTCTCACCGAGTGGCATTTGGTGAAA
TGAATGTTTCATGTCCAACTTTGTGAATACTTTGGCGCCGTTAAGCTTGT
GACGCAAGGAATGGACAGTCGGTATGGGAATATGGCTTTCTTTGATGGCA
ATATTTGCGTGACACATGTCTAAATTCATGCGTATCTGCCCGGATGGTTT
CTTTGTAATGACAACGTTCGAGATCCAGTCGAGGTTAACACTTGGGTCTA
ACGGGCCTTCGATGATGTCATTGTCTCTAAGTTCTTTGAGATGGCTCGTG
ACTTGTTTTCTGAAAGCAAACGGTATCGGCCGCTCCTTCTGTATCATTGG
TTTGATCCATCCGTCTATATCAAagtttatttctgatttattgaaCTTGC
CGATTCCCTCAAAGATAGGTTGATGCTTGTCGATGATTTCAGTCACTGAA
GTTGGG Run BLAST on NCBI protein sequence of TCONS_00051442-protein >TCONS_00051442-protein ID=TCONS_00051442-protein|Name=TCONS_00051442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
PTSVTEIIDKHQPIFEGIGKFNKSEINFDIDGWIKPMIQKERPIPFAFRK
QVTSHLKELRDNDIIEGPLDPSVNLDWISNVVITKKPSGQIRMNLDMCHA
NIAIKESHIPIPTVHSLRHKLNGAKVFTKLDMKHSFHQMPLGEKSKELTN
FYTHEGIYRFKRLVMGAGPASQEFHERLRQSIVDLVGVEQIEDDLLVYGE
TQHEHDLHLSALLDRLQSLGLTLRREKCEWSAPEVIWFGYKFSSEGMSAD
PSKVETIVRLAPPTNAAE Run BLAST on NCBI transcript from alignment at scaffold_201:244222..245027 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051442 ID=TCONS_00051442|Name=TCONS_00051442|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at scaffold_201:244222..245027 (Clytia hemisphaerica)
CCCAACTTCAGTGACTGAAATCATCGACAAGCATCAACCTATCTTTGAGG
GAATCGGCAAGttcaataaatcagaaataaactTTGATATAGACGGATGG
ATCAAACCAATGATACAGAAGGAGCGGCCGATACCGTTTGCTTTCAGAAA
ACAAGTCACGAGCCATCTCAAAGAACTTAGAGACAATGACATCATCGAAG
GCCCGTTAGACCCAAGTGTTAACCTCGACTGGATCTCGAACGTTGTCATT
ACAAAGAAACCATCCGGGCAGATACGCATGAATTTAGACATGTGTCACGC
AAATATTGCCATCAAAGAAAGCCATATTCCCATACCGACTGTCCATTCCT
TGCGTCACAAGCTTAACGGCGCCAAAGTATTCACAAAGTTGGACATGAAA
CATTCATTTCACCAAATGCCACTCGGTGAGAAATCGAAAGAACTTACAAA
CTTTTACACGCACGAAGGCATCTACCGATTTAAGCGTCTTGTCATGGGTG
CTGGACCTGCCAGTCAAGAGTTCCATGAGCGTTTGCGACAAAGTATTGTA
GACCTCGTTGGTGTGGAACAGATTGAAGACGATTTGCTAGTTTACGGAGA
GACCCAACATGAGCATGACCTCCATTTGAGTGCTCTACTTGATCGATTAC
AATCCCTCGGCTTAACACTTAGACGAGAGAAATGTGAGTGGAGTGCTCCA
GAAGTTATTTGGTTTGGGTATAAGTTTTCCAGCGAAGGTATGTCTGCAGA
TCCATCGAAAGTAGAGACTATCGTCAGACTCGCACCACCAACCAACGCAG
CGGAAG Coding sequence (CDS) from alignment at scaffold_201:244222..245027 >TCONS_00051442 ID=TCONS_00051442|Name=TCONS_00051442|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_201:244222..245027 (Clytia hemisphaerica)
CCAACTTCAGTGACTGAAATCATCGACAAGCATCAACCTATCTTTGAGGG
AATCGGCAAGttcaataaatcagaaataaactTTGATATAGACGGATGGA
TCAAACCAATGATACAGAAGGAGCGGCCGATACCGTTTGCTTTCAGAAAA
CAAGTCACGAGCCATCTCAAAGAACTTAGAGACAATGACATCATCGAAGG
CCCGTTAGACCCAAGTGTTAACCTCGACTGGATCTCGAACGTTGTCATTA
CAAAGAAACCATCCGGGCAGATACGCATGAATTTAGACATGTGTCACGCA
AATATTGCCATCAAAGAAAGCCATATTCCCATACCGACTGTCCATTCCTT
GCGTCACAAGCTTAACGGCGCCAAAGTATTCACAAAGTTGGACATGAAAC
ATTCATTTCACCAAATGCCACTCGGTGAGAAATCGAAAGAACTTACAAAC
TTTTACACGCACGAAGGCATCTACCGATTTAAGCGTCTTGTCATGGGTGC
TGGACCTGCCAGTCAAGAGTTCCATGAGCGTTTGCGACAAAGTATTGTAG
ACCTCGTTGGTGTGGAACAGATTGAAGACGATTTGCTAGTTTACGGAGAG
ACCCAACATGAGCATGACCTCCATTTGAGTGCTCTACTTGATCGATTACA
ATCCCTCGGCTTAACACTTAGACGAGAGAAATGTGAGTGGAGTGCTCCAG
AAGTTATTTGGTTTGGGTATAAGTTTTCCAGCGAAGGTATGTCTGCAGAT
CCATCGAAAGTAGAGACTATCGTCAGACTCGCACCACCAACCAACGCAGC
GGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051442-exon-scaffold_201-1491911889:244222..245027 | TCONS_00051442-exon-scaffold_201-1491911889:244222..245027 | Clytia hemisphaerica | exon |
| TCONS_00051442-exon-scaffold_201-1510915933:244222..245027 | TCONS_00051442-exon-scaffold_201-1510915933:244222..245027 | Clytia hemisphaerica | exon |
| TCONS_00051442-exon-scaffold_201-1575043694:244222..245027 | TCONS_00051442-exon-scaffold_201-1575043694:244222..245027 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:244222..245027 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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