TCONS_00051447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051447
Unique NameTCONS_00051447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051447 ID=TCONS_00051447|Name=TCONS_00051447|organism=Clytia hemisphaerica|type=transcript|length=647bp
CGCCGAATTCAATGGTCAACAATGAGAAAACAGCAAGCGGCAGCGgcgat
tcttatcctcttttcccaaatctctggtaCTATCAAAGGAACACCAGctt
attggaaaaaatttcaacaagaaGTTTTAGCCATGGTTAAACAACTAGGT
CCACCAACTTTCTTTAATACCCTGAGTTGCGCTGATCTTAGATGGAACGA
GCTGATCTCTATTATTTACAAACTTAAGGGTCAAAATGTTACTGATGAAT
TCATAGACAATCTTTCCTATCATGAAAGATGTGAATTGTTAAATAGTAAT
CCTGTACTTGTGGCTAGACATTTTCAATACAGAGttgaagtattttttaa
aacaatcaTATTAGATGGCCCTCTTGGTAAAACCACTTATTACGCTATCC
GTGTTGAATTCCAAGTTTGTGGTAGTCCTCACATTCATTCATTTCTTTGG
ATCATGAATGCACCAGTACTAAGTAAAGAAACAAAGGTAGAATACATAGA
GTTTCTTGATAAGATAATCAAAGTTCACTTACCATCTCAAGAAGAAGATC
CTGATTTATTTAACCTTGTAAAAACTTATCAATTACATCGCCATTCAAAA
ACATGTCGCAAATATAAAAATACTCCTTGCAGATTTTATTTTGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00051447-protein

>TCONS_00051447-protein ID=TCONS_00051447-protein|Name=TCONS_00051447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
RRIQWSTMRKQQAAAAILILFSQISGTIKGTPAYWKKFQQEVLAMVKQLG
PPTFFNTLSCADLRWNELISIIYKLKGQNVTDEFIDNLSYHERCELLNSN
PVLVARHFQYRVEVFFKTIILDGPLGKTTYYAIRVEFQVCGSPHIHSFLW
IMNAPVLSKETKVEYIEFLDKIIKVHLPSQEEDPDLFNLVKTYQLHRHSK
TCRKYKNTPCRFYFG
Run BLAST on NCBI

transcript from alignment at scaffold_201:270160..270806

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051447 ID=TCONS_00051447|Name=TCONS_00051447|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at scaffold_201:270160..270806 (Clytia hemisphaerica)
TTACCAAAATAAAATCTGCAAGGAGTATTTTTATATTTGCGACATGTTTT
TGAATGGCGATGTAATTGATAAGTTTTTACAAGGTTAAATAAATCAGGAT
CTTCTTCTTGAGATGGTAAGTGAACTTTGATTATCTTATCAAGAAACTCT
ATGTATTCTACCTTTGTTTCTTTACTTAGTACTGGTGCATTCATGATCCA
AAGAAATGAATGAATGTGAGGACTACCACAAACTTGGAATTCAACACGGA
TAGCGTAATAAGTGGTTTTACCAAGAGGGCCATCTAATAtgattgtttta
aaaaatacttcaaCTCTGTATTGAAAATGTCTAGCCACAAGTACAGGATT
ACTATTTAACAATTCACATCTTTCATGATAGGAAAGATTGTCTATGAATT
CATCAGTAACATTTTGACCCTTAAGTTTGTAAATAATAGAGATCAGCTCG
TTCCATCTAAGATCAGCGCAACTCAGGGTATTAAAGAAAGTTGGTGGACC
TAGTTGTTTAACCATGGCTAAAACttcttgttgaaattttttccaataag
CTGGTGTTCCTTTGATAGtaccagagatttgggaaaagaggataagaatc
gcCGCTGCCGCTTGCTGTTTTCTCATTGTTGACCATTGAATTCGGCG

Coding sequence (CDS) from alignment at scaffold_201:270160..270806

>TCONS_00051447 ID=TCONS_00051447|Name=TCONS_00051447|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_201:270160..270806 (Clytia hemisphaerica)
ACCAAAATAAAATCTGCAAGGAGTATTTTTATATTTGCGACATGTTTTTG
AATGGCGATGTAATTGATAAGTTTTTACAAGGTTAAATAAATCAGGATCT
TCTTCTTGAGATGGTAAGTGAACTTTGATTATCTTATCAAGAAACTCTAT
GTATTCTACCTTTGTTTCTTTACTTAGTACTGGTGCATTCATGATCCAAA
GAAATGAATGAATGTGAGGACTACCACAAACTTGGAATTCAACACGGATA
GCGTAATAAGTGGTTTTACCAAGAGGGCCATCTAATAtgattgttttaaa
aaatacttcaaCTCTGTATTGAAAATGTCTAGCCACAAGTACAGGATTAC
TATTTAACAATTCACATCTTTCATGATAGGAAAGATTGTCTATGAATTCA
TCAGTAACATTTTGACCCTTAAGTTTGTAAATAATAGAGATCAGCTCGTT
CCATCTAAGATCAGCGCAACTCAGGGTATTAAAGAAAGTTGGTGGACCTA
GTTGTTTAACCATGGCTAAAACttcttgttgaaattttttccaataagCT
GGTGTTCCTTTGATAGtaccagagatttgggaaaagaggataagaatcgc
CGCTGCCGCTTGCTGTTTTCTCATTGTTGACCATTGAATTCGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032601XLOC_032601Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051447-exon-scaffold_201-1491911889:270160..270806TCONS_00051447-exon-scaffold_201-1491911889:270160..270806Clytia hemisphaericaexon
TCONS_00051447-exon-scaffold_201-1510915933:270160..270806TCONS_00051447-exon-scaffold_201-1510915933:270160..270806Clytia hemisphaericaexon
TCONS_00051447-exon-scaffold_201-1575043694:270160..270806TCONS_00051447-exon-scaffold_201-1575043694:270160..270806Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051447-proteinTCONS_00051447-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:270160..270806 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43524	1.44172	1.23914	0.908931	1.94885	1.82525	3.96185	4.2937	1.44694	2.63561	1.47764	1.24391	0.674633	1.54743	0.885897	2.44715	1.27512	2.06484	0.803954	0.870568	1.67569	2.32362	0.445393	0.683661	1.61678	2.08164	2.58537	2.92944	1.00057	0.528863
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025476Helitron_helicase-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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