TCONS_00051448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051448
Unique NameTCONS_00051448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051448 ID=TCONS_00051448|Name=TCONS_00051448|organism=Clytia hemisphaerica|type=transcript|length=546bp
GTTAATTATTTGTTGAGGATTTTCGAAGGAGGAGGGTGTTGtattaatat
tattattattaatgtTGCTAAATTTGCTGTGTTTTTTCATAGTTTCAACG
TCTGATCGTAGCGTCCTAAACTCCTGGATCAGTGTAGATAGGTTGGCTTG
TGATATAGGTTCGGTAGTAGTTTGAATAGGGTTGGGATTGAAGTGGTTGA
ATAAACGGTTTTGTAGTTCAATCTTCTTACCGGTTGTTTGCAGGTTTTGC
GATCGTAGTTTCTGACGAAGATTGTCGATTGATAGTTTACCCCAATCTTT
GCTTGAACGTTCCTGGTCTGAGGTTTTTGTTGAGTTTTTCCTTGAACGAG
GCATGATATTATTTCTTTGTGATATATGAAAATTTGTAGTTACTAAAAAA
TAACATCCGAACTAGCGAAGGACGGAATGAGAATGAGGACCACGAGGAAG
GACTGGGTCTAGTAGAGACATGGGGGCGGGGAGCAGAGGCGTATTCCTTG
TCTACCGCCGCTAAACGAAATTTCGCGCCCCGGGCCCGAAACTGAG
Run BLAST on NCBI

protein sequence of TCONS_00051448-protein

>TCONS_00051448-protein ID=TCONS_00051448-protein|Name=TCONS_00051448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MPRSRKNSTKTSDQERSSKDWGKLSIDNLRQKLRSQNLQTTGKKIELQNR
LFNHFNPNPIQTTTEPISQANLSTLIQEFRTLRSDVETMKKHSKFSNINN
NNINTTPSSFENPQQIIN
Run BLAST on NCBI

transcript from alignment at scaffold_201:277091..277636

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051448 ID=TCONS_00051448|Name=TCONS_00051448|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at scaffold_201:277091..277636 (Clytia hemisphaerica)
CTCAGTTTCGGGCCCGGGGCGCGAAATTTCGTTTAGCGGCGGTAGACAAG
GAATACGCCTCTGCTCCCCGCCCCCATGTCTCTACTAGACCCAGTCCTTC
CTCGTGGTCCTCATTCTCATTCCGTCCTTCGCTAGTTCGGATGTTATTTT
TTAGTAACTACAAATTTTCATATATCACAAAGAAATAATATCATGCCTCG
TTCAAGGAAAAACTCAACAAAAACCTCAGACCAGGAACGTTCAAGCAAAG
ATTGGGGTAAACTATCAATCGACAATCTTCGTCAGAAACTACGATCGCAA
AACCTGCAAACAACCGGTAAGAAGATTGAACTACAAAACCGTTTATTCAA
CCACTTCAATCCCAACCCTATTCAAACTACTACCGAACCTATATCACAAG
CCAACCTATCTACACTGATCCAGGAGTTTAGGACGCTACGATCAGACGTT
GAAACTATGAAAAAACACAGCAAATTTAGCAacattaataataataatat
taataCAACACCCTCCTCCTTCGAAAATCCTCAACAAATAATTAAC

Coding sequence (CDS) from alignment at scaffold_201:277091..277636

>TCONS_00051448 ID=TCONS_00051448|Name=TCONS_00051448|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_201:277091..277636 (Clytia hemisphaerica)
ATGCCTCGTTCAAGGAAAAACTCAACAAAAACCTCAGACCAGGAACGTTC
AAGCAAAGATTGGGGTAAACTATCAATCGACAATCTTCGTCAGAAACTAC
GATCGCAAAACCTGCAAACAACCGGTAAGAAGATTGAACTACAAAACCGT
TTATTCAACCACTTCAATCCCAACCCTATTCAAACTACTACCGAACCTAT
ATCACAAGCCAACCTATCTACACTGATCCAGGAGTTTAGGACGCTACGAT
CAGACGTTGAAACTATGAAAAAACACAGCAAATTTAGCAacattaataat
aataatattaataCAACACCCTCCTCCTTCGAAAATCCTCAACAAATAAT
TAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032602XLOC_032602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051448-exon-scaffold_201-1491911889:277091..277636TCONS_00051448-exon-scaffold_201-1491911889:277091..277636Clytia hemisphaericaexon
TCONS_00051448-exon-scaffold_201-1510915933:277091..277636TCONS_00051448-exon-scaffold_201-1510915933:277091..277636Clytia hemisphaericaexon
TCONS_00051448-exon-scaffold_201-1575043694:277091..277636TCONS_00051448-exon-scaffold_201-1575043694:277091..277636Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051448-proteinTCONS_00051448-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:277091..277636 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.315826	0.5133	0.715188	0.34985	0.425908	0.112186	0.541392	0.760266	0.53228	0.769201	0.853263	0.560902	3.29072	2.39948	0.657566	0.577366	0.711267	1.37705	10.5195	8.66582	1.425	0.893658	0.724239	1.20714	0	0.201752	1.29918	1.0784	0.934778	0.476195
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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