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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051449 ID=TCONS_00051449|Name=TCONS_00051449|organism=Clytia hemisphaerica|type=transcript|length=2258bp
CGGAAGATTGTCGGTATGAAATACAATACGTTTCCCTGCCCATTCACCAC
CCCAGGTTTTGGTTGCTATAACTATGGTAAAGAGTTCCTTAAAGTCGATG
TCGAATGGTTTCCTGGTAAATTTCTCTGGCCAGGTTGATTGAATCCAAGA
ATTCCTGTATATTGCACCAAGTCCAATGTTGGATGCGTCAGTGTGGAGTT
GGATATCACTAGCAAGTATGGTGAAGGGATCTGGAATTAATGATGATTTG
TTCCAGGTTGGTAGGAAGTCGATCCACCATTTGATGTCATCCCGAGCTTC
ACTGTTCAACGTTATGTGGTGGTGTAATTTCTTCACGGTTGTAGAGATAT
CTATTAGTCTACGTAAAAAGATTCGACCTGGTCTCACAATTTTACAGACG
AACGACAACTTTCCAATAAGGGACAGCAGTTCTTTCTTGGTGCATTTCCG
ACGCGAATTCCAAAAAGGTAGAATTTCCATAAGTTCGGAGTATTTGTCGT
CTGGTATTCGTATGGTTAAATTTGAAGAGTCTATTTCAATCCCGAGGTAT
GTGATTTGACTAGATGGGCCTTCCTGTTTTTCTTCAGCAATTGGGATTCC
TAGCTGGTGAAATGCTAATGTGGCAGTTTTTATTTCGTTTAGGGCTGTTT
GAATTGTCGGTGGGTGTACAAATAGAAAATCGTCAGAGTAGTGGGTTGAA
TCTTGCAACTGGTAAACGTTTTGTAGTATCCAGTGTACTGCATTTGCAAA
GGAGGTAAAAATCGCTGGTGACGAACGTAATCCAAATGGTAAACGAGTAT
CAATAAAGTACAAGCCCATCCAATGAATACCAAGTAGTACCCACTGAGAT
GGATGCACAGGTAGGAGACGAAAAGCGTGTTTAATGTCAATTTTTGTCAT
AAGGCAGTCCTTTCCTTTATAGTAAACAAGATCCGTCGCTTGATCGAAAT
TTAGGTATTTAActgtaaaattttctttgggtATACCTTCGTTTATGGAT
TCACCATCTGGTTGTGATAAGTCCATGATTAGTCTTCTTGTTCCGTCTTT
CTTTTCTCTTGACCCGAGTGGAGAGCAGTGAAGATCCTGTATTGGTGGTT
TTGCAAAAGGTCCGGCAGTATGTCTGCGCGAGAGTTCCTTGCAAATGGCT
TCAGTTACTGCTTCTGAGTGTTCGGTCGCAGAGCGTAAGTTTTTTGGCAG
TGTGGTATGATGTGGACCTTCAAAGCCAATATGGAAACCATTTTGTAAGC
CGTTTATTAAATATCTACATAGTTCCTGGTCTGGATGATATTGTAATGCA
GAAGAAAAGTTTTCAATATTTACAGGAGTTATGATACTTTCAGGTAGAGG
GTTAGTTGGTTGGAGGACGGAATGTTGTACGAGTAGAGGATGCGCCTGTG
AAACATCTAGCTCCTGGGTGTCCTGCTTTGAAGCATTTATTACAGATGTG
AAGGAAGCGACATGGTGGCTTGTTGCAGGCTCCGTTGTTTTGGTTGAATC
GGTGGCAAATCTCTTGAGTGGTTTCTGAGCGACTATGATATTGTGTTTGG
CTGTTTCCAGATCCAATACGGTTTTGTGGTGGTTGTGGGTCATTCCGAAA
CGTTTTATCTGGTGCTACATACGTGTAGGGGTTGACATATTTGTTTGGTG
TACGAGCATTTTGTTTATAGGGGCAAGCTGACGCATAATGACCGTAGGTT
GAACAATGATAGCAGGAGGGTAGGTGCGAATCTCGAAGGAAACTATTGAA
TAATTCGTCATTGAGTGTTGTCCAGTCGGTTGTTCGTAGTTGTGCAGGTA
GGGAGTGTTGGGCAGCAAGTGTTTGACGCTGAGACTTGTCGTATAAGTAA
ATGTTTTCGAAACGATGTTTCCTTGCCAGGTTTGTAATTATTTTGAAGTA
CGAGAAAAGTTCATAATGTTTGTCGGGATGATAATGTAAGTAGGCTTGGT
AAAAAAGGTTCCACGCACAGATCCATGATGGATAATCACGTATTCTTGCC
TTATTTTGGTTCGGTTTGAGTAAAAGATTGTTATCTGCATCGAGTTGAAA
ACCGAGTAATTCTGTGCTACTGTTGACTGATGGTGGTGGAGGAAGTAAAT
CATCGAAATCGACGTATTCGGATTTCTTTACCTTAGTTAGGATAGCAGTC
TTAAGTCCTGGTGGGGTGTATGGGTTTATAGCACTAGGAAATGTACCTTG
ATTTATGTGAGTGCTGCTTGGTGGTGATGTGAATCCAAAAGTGGGTGAAT
CATGCTGT Run BLAST on NCBI protein sequence of TCONS_00051449-protein >TCONS_00051449-protein ID=TCONS_00051449-protein|Name=TCONS_00051449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp
MTHNHHKTVLDLETAKHNIIVAQKPLKRFATDSTKTTEPATSHHVASFTS
VINASKQDTQELDVSQAHPLLVQHSVLQPTNPLPESIITPVNIENFSSAL
QYHPDQELCRYLINGLQNGFHIGFEGPHHTTLPKNLRSATEHSEAVTEAI
CKELSRRHTAGPFAKPPIQDLHCSPLGSREKKDGTRRLIMDLSQPDGESI
NEGIPKENFTVKYLNFDQATDLVYYKGKDCLMTKIDIKHAFRLLPVHPSQ
WVLLGIHWMGLYFIDTRLPFGLRSSPAIFTSFANAVHWILQNVYQLQDST
HYSDDFLFVHPPTIQTALNEIKTATLAFHQLGIPIAEEKQEGPSSQITYL
GIEIDSSNLTIRIPDDKYSELMEILPFWNSRRKCTKKELLSLIGKLSFVC
KIVRPGRIFLRRLIDISTTVKKLHHHITLNSEARDDIKWWIDFLPTWNKS
SLIPDPFTILASDIQLHTDASNIGLGAIYRNSWIQSTWPEKFTRKPFDID
FKELFTIVIATKTWGGEWAGKRIVFHTDNLP Run BLAST on NCBI transcript from alignment at scaffold_201:277762..280019 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051449 ID=TCONS_00051449|Name=TCONS_00051449|organism=Clytia hemisphaerica|type=transcript|length=2258bp|location=Sequence derived from alignment at scaffold_201:277762..280019 (Clytia hemisphaerica)
ACAGCATGATTCACCCACTTTTGGATTCACATCACCACCAAGCAGCACTC
ACATAAATCAAGGTACATTTCCTAGTGCTATAAACCCATACACCCCACCA
GGACTTAAGACTGCTATCCTAACTAAGGTAAAGAAATCCGAATACGTCGA
TTTCGATGATTTACTTCCTCCACCACCATCAGTCAACAGTAGCACAGAAT
TACTCGGTTTTCAACTCGATGCAGATAACAATCTTTTACTCAAACCGAAC
CAAAATAAGGCAAGAATACGTGATTATCCATCATGGATCTGTGCGTGGAA
CCTTTTTTACCAAGCCTACTTACATTATCATCCCGACAAACATTATGAAC
TTTTCTCGTACTTCAAAATAATTACAAACCTGGCAAGGAAACATCGTTTC
GAAAACATTTACTTATACGACAAGTCTCAGCGTCAAACACTTGCTGCCCA
ACACTCCCTACCTGCACAACTACGAACAACCGACTGGACAACACTCAATG
ACGAATTATTCAATAGTTTCCTTCGAGATTCGCACCTACCCTCCTGCTAT
CATTGTTCAACCTACGGTCATTATGCGTCAGCTTGCCCCTATAAACAAAA
TGCTCGTACACCAAACAAATATGTCAACCCCTACACGTATGTAGCACCAG
ATAAAACGTTTCGGAATGACCCACAACCACCACAAAACCGTATTGGATCT
GGAAACAGCCAAACACAATATCATAGTCGCTCAGAAACCACTCAAGAGAT
TTGCCACCGATTCAACCAAAACAACGGAGCCTGCAACAAGCCACCATGTC
GCTTCCTTCACATCTGTAATAAATGCTTCAAAGCAGGACACCCAGGAGCT
AGATGTTTCACAGGCGCATCCTCTACTCGTACAACATTCCGTCCTCCAAC
CAACTAACCCTCTACCTGAAAGTATCATAACTCCTGTAAATATTGAAAAC
TTTTCTTCTGCATTACAATATCATCCAGACCAGGAACTATGTAGATATTT
AATAAACGGCTTACAAAATGGTTTCCATATTGGCTTTGAAGGTCCACATC
ATACCACACTGCCAAAAAACTTACGCTCTGCGACCGAACACTCAGAAGCA
GTAACTGAAGCCATTTGCAAGGAACTCTCGCGCAGACATACTGCCGGACC
TTTTGCAAAACCACCAATACAGGATCTTCACTGCTCTCCACTCGGGTCAA
GAGAAAAGAAAGACGGAACAAGAAGACTAATCATGGACTTATCACAACCA
GATGGTGAATCCATAAACGAAGGTATacccaaagaaaattttacagTTAA
ATACCTAAATTTCGATCAAGCGACGGATCTTGTTTACTATAAAGGAAAGG
ACTGCCTTATGACAAAAATTGACATTAAACACGCTTTTCGTCTCCTACCT
GTGCATCCATCTCAGTGGGTACTACTTGGTATTCATTGGATGGGCTTGTA
CTTTATTGATACTCGTTTACCATTTGGATTACGTTCGTCACCAGCGATTT
TTACCTCCTTTGCAAATGCAGTACACTGGATACTACAAAACGTTTACCAG
TTGCAAGATTCAACCCACTACTCTGACGATTTTCTATTTGTACACCCACC
GACAATTCAAACAGCCCTAAACGAAATAAAAACTGCCACATTAGCATTTC
ACCAGCTAGGAATCCCAATTGCTGAAGAAAAACAGGAAGGCCCATCTAGT
CAAATCACATACCTCGGGATTGAAATAGACTCTTCAAATTTAACCATACG
AATACCAGACGACAAATACTCCGAACTTATGGAAATTCTACCTTTTTGGA
ATTCGCGTCGGAAATGCACCAAGAAAGAACTGCTGTCCCTTATTGGAAAG
TTGTCGTTCGTCTGTAAAATTGTGAGACCAGGTCGAATCTTTTTACGTAG
ACTAATAGATATCTCTACAACCGTGAAGAAATTACACCACCACATAACGT
TGAACAGTGAAGCTCGGGATGACATCAAATGGTGGATCGACTTCCTACCA
ACCTGGAACAAATCATCATTAATTCCAGATCCCTTCACCATACTTGCTAG
TGATATCCAACTCCACACTGACGCATCCAACATTGGACTTGGTGCAATAT
ACAGGAATTCTTGGATTCAATCAACCTGGCCAGAGAAATTTACCAGGAAA
CCATTCGACATCGACTTTAAGGAACTCTTTACCATAGTTATAGCAACCAA
AACCTGGGGTGGTGAATGGGCAGGGAAACGTATTGTATTTCATACCGACA
ATCTTCCG Coding sequence (CDS) from alignment at scaffold_201:277762..280019 >TCONS_00051449 ID=TCONS_00051449|Name=TCONS_00051449|organism=Clytia hemisphaerica|type=CDS|length=1593bp|location=Sequence derived from alignment at scaffold_201:277762..280019 (Clytia hemisphaerica)
ATGACCCACAACCACCACAAAACCGTATTGGATCTGGAAACAGCCAAACA
CAATATCATAGTCGCTCAGAAACCACTCAAGAGATTTGCCACCGATTCAA
CCAAAACAACGGAGCCTGCAACAAGCCACCATGTCGCTTCCTTCACATCT
GTAATAAATGCTTCAAAGCAGGACACCCAGGAGCTAGATGTTTCACAGGC
GCATCCTCTACTCGTACAACATTCCGTCCTCCAACCAACTAACCCTCTAC
CTGAAAGTATCATAACTCCTGTAAATATTGAAAACTTTTCTTCTGCATTA
CAATATCATCCAGACCAGGAACTATGTAGATATTTAATAAACGGCTTACA
AAATGGTTTCCATATTGGCTTTGAAGGTCCACATCATACCACACTGCCAA
AAAACTTACGCTCTGCGACCGAACACTCAGAAGCAGTAACTGAAGCCATT
TGCAAGGAACTCTCGCGCAGACATACTGCCGGACCTTTTGCAAAACCACC
AATACAGGATCTTCACTGCTCTCCACTCGGGTCAAGAGAAAAGAAAGACG
GAACAAGAAGACTAATCATGGACTTATCACAACCAGATGGTGAATCCATA
AACGAAGGTATacccaaagaaaattttacagTTAAATACCTAAATTTCGA
TCAAGCGACGGATCTTGTTTACTATAAAGGAAAGGACTGCCTTATGACAA
AAATTGACATTAAACACGCTTTTCGTCTCCTACCTGTGCATCCATCTCAG
TGGGTACTACTTGGTATTCATTGGATGGGCTTGTACTTTATTGATACTCG
TTTACCATTTGGATTACGTTCGTCACCAGCGATTTTTACCTCCTTTGCAA
ATGCAGTACACTGGATACTACAAAACGTTTACCAGTTGCAAGATTCAACC
CACTACTCTGACGATTTTCTATTTGTACACCCACCGACAATTCAAACAGC
CCTAAACGAAATAAAAACTGCCACATTAGCATTTCACCAGCTAGGAATCC
CAATTGCTGAAGAAAAACAGGAAGGCCCATCTAGTCAAATCACATACCTC
GGGATTGAAATAGACTCTTCAAATTTAACCATACGAATACCAGACGACAA
ATACTCCGAACTTATGGAAATTCTACCTTTTTGGAATTCGCGTCGGAAAT
GCACCAAGAAAGAACTGCTGTCCCTTATTGGAAAGTTGTCGTTCGTCTGT
AAAATTGTGAGACCAGGTCGAATCTTTTTACGTAGACTAATAGATATCTC
TACAACCGTGAAGAAATTACACCACCACATAACGTTGAACAGTGAAGCTC
GGGATGACATCAAATGGTGGATCGACTTCCTACCAACCTGGAACAAATCA
TCATTAATTCCAGATCCCTTCACCATACTTGCTAGTGATATCCAACTCCA
CACTGACGCATCCAACATTGGACTTGGTGCAATATACAGGAATTCTTGGA
TTCAATCAACCTGGCCAGAGAAATTTACCAGGAAACCATTCGACATCGAC
TTTAAGGAACTCTTTACCATAGTTATAGCAACCAAAACCTGGGGTGGTGA
ATGGGCAGGGAAACGTATTGTATTTCATACCGACAATCTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051449-exon-scaffold_201-1491911889:277762..280019 | TCONS_00051449-exon-scaffold_201-1491911889:277762..280019 | Clytia hemisphaerica | exon |
| TCONS_00051449-exon-scaffold_201-1510915933:277762..280019 | TCONS_00051449-exon-scaffold_201-1510915933:277762..280019 | Clytia hemisphaerica | exon |
| TCONS_00051449-exon-scaffold_201-1575043694:277762..280019 | TCONS_00051449-exon-scaffold_201-1575043694:277762..280019 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:277762..280019 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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