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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051452 ID=TCONS_00051452|Name=TCONS_00051452|organism=Clytia hemisphaerica|type=transcript|length=834bp
CAGCTACTTACAGGCATCTCAAAGCTGGAGCATTTCTCAACCTACCCAGT
GAAACAACGCTGAATGCCTACAGCCAGTTTTGCTGCACGAATACCGGTTT
TGATGTTAAAAAGATAGAGCAACTCCTGAAAGAAATTAAGATAGACGATT
GCAAGGATTATGAAAAGAATGTTGCTCTGGCATTTGATGAAATGCATATC
AAATCGGGACTAGTGTATGACAAGGGATCAGGGAAGTTGATTGGGTTTAC
AGACCTTGGTGACATCAACACTGAAATCGAAAAAGTTGAGCAGCAGTTTG
CTGGCAGCCAAGAGCGTCCATTATCCACACAAATATTGTGCTTTATGATG
AGAGGTATATACACCCACCTCAATTATCCGATTGGCTTCTTTGGTACCAA
CGGTTGTCGAAGTGATCAGATCTATAATTGTGCCTGGGAAGCAGTCAGAG
TGCTTGAAGCAGTTGGTTTCAATGTTAGGGCATTCATTAGTGATGGGGCA
TCAAGTAATCGAATATTTTATGCTATCCACCAATTGCCTGATTCTAGTGA
TCAAGATGCTGAGAGCAACATCCACAAGGATGGTAACCTTTATTGGTGCT
GGAATGGGTTCAATGTTGCtaataaaatatatttcttttgtGATGTCCCT
CATTTGATCAAAACAGCTAGAAACAACTTGGAGAACTCGCATGTACATCT
ATGTTCACGAAGTAACAGTAAGTAGCACtcattactttttataaaatgtt
cactaaagtctattcacgataagtgtgcactcttttttcatttacctata
acttttgaaggaattcttcaatctttataaattt Run BLAST on NCBI protein sequence of TCONS_00051452-protein >TCONS_00051452-protein ID=TCONS_00051452-protein|Name=TCONS_00051452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
ATYRHLKAGAFLNLPSETTLNAYSQFCCTNTGFDVKKIEQLLKEIKIDDC
KDYEKNVALAFDEMHIKSGLVYDKGSGKLIGFTDLGDINTEIEKVEQQFA
GSQERPLSTQILCFMMRGIYTHLNYPIGFFGTNGCRSDQIYNCAWEAVRV
LEAVGFNVRAFISDGASSNRIFYAIHQLPDSSDQDAESNIHKDGNLYWCW
NGFNVANKIYFFCDVPHLIKTARNNLENSHVHLCSRSNSK Run BLAST on NCBI transcript from alignment at scaffold_201:306465..307298 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051452 ID=TCONS_00051452|Name=TCONS_00051452|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at scaffold_201:306465..307298 (Clytia hemisphaerica)
aaatttataaagattgaagaattccttcaaaagttataggtaaatgaaaa
aagagtgcacacttatcgtgaatagactttagtgaacattttataaaaag
taatgaGTGCTACTTACTGTTACTTCGTGAACATAGATGTACATGCGAGT
TCTCCAAGTTGTTTCTAGCTGTTTTGATCAAATGAGGGACATCacaaaag
aaatatattttattaGCAACATTGAACCCATTCCAGCACCAATAAAGGTT
ACCATCCTTGTGGATGTTGCTCTCAGCATCTTGATCACTAGAATCAGGCA
ATTGGTGGATAGCATAAAATATTCGATTACTTGATGCCCCATCACTAATG
AATGCCCTAACATTGAAACCAACTGCTTCAAGCACTCTGACTGCTTCCCA
GGCACAATTATAGATCTGATCACTTCGACAACCGTTGGTACCAAAGAAGC
CAATCGGATAATTGAGGTGGGTGTATATACCTCTCATCATAAAGCACAAT
ATTTGTGTGGATAATGGACGCTCTTGGCTGCCAGCAAACTGCTGCTCAAC
TTTTTCGATTTCAGTGTTGATGTCACCAAGGTCTGTAAACCCAATCAACT
TCCCTGATCCCTTGTCATACACTAGTCCCGATTTGATATGCATTTCATCA
AATGCCAGAGCAACATTCTTTTCATAATCCTTGCAATCGTCTATCTTAAT
TTCTTTCAGGAGTTGCTCTATCTTTTTAACATCAAAACCGGTATTCGTGC
AGCAAAACTGGCTGTAGGCATTCAGCGTTGTTTCACTGGGTAGGTTGAGA
AATGCTCCAGCTTTGAGATGCCTGTAAGTAGCTG Coding sequence (CDS) from alignment at scaffold_201:306465..307298 >TCONS_00051452 ID=TCONS_00051452|Name=TCONS_00051452|organism=Clytia hemisphaerica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_201:306465..307298 (Clytia hemisphaerica)
CTACTTACTGTTACTTCGTGAACATAGATGTACATGCGAGTTCTCCAAGT
TGTTTCTAGCTGTTTTGATCAAATGAGGGACATCacaaaagaaatatatt
ttattaGCAACATTGAACCCATTCCAGCACCAATAAAGGTTACCATCCTT
GTGGATGTTGCTCTCAGCATCTTGATCACTAGAATCAGGCAATTGGTGGA
TAGCATAAAATATTCGATTACTTGATGCCCCATCACTAATGAATGCCCTA
ACATTGAAACCAACTGCTTCAAGCACTCTGACTGCTTCCCAGGCACAATT
ATAGATCTGATCACTTCGACAACCGTTGGTACCAAAGAAGCCAATCGGAT
AATTGAGGTGGGTGTATATACCTCTCATCATAAAGCACAATATTTGTGTG
GATAATGGACGCTCTTGGCTGCCAGCAAACTGCTGCTCAACTTTTTCGAT
TTCAGTGTTGATGTCACCAAGGTCTGTAAACCCAATCAACTTCCCTGATC
CCTTGTCATACACTAGTCCCGATTTGATATGCATTTCATCAAATGCCAGA
GCAACATTCTTTTCATAATCCTTGCAATCGTCTATCTTAATTTCTTTCAG
GAGTTGCTCTATCTTTTTAACATCAAAACCGGTATTCGTGCAGCAAAACT
GGCTGTAGGCATTCAGCGTTGTTTCACTGGGTAGGTTGAGAAATGCTCCA
GCTTTGAGATGCCTGTAAGTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051452-exon-scaffold_201-1491911889:306465..307298 | TCONS_00051452-exon-scaffold_201-1491911889:306465..307298 | Clytia hemisphaerica | exon |
| TCONS_00051452-exon-scaffold_201-1510915933:306465..307298 | TCONS_00051452-exon-scaffold_201-1510915933:306465..307298 | Clytia hemisphaerica | exon |
| TCONS_00051452-exon-scaffold_201-1575043694:306465..307298 | TCONS_00051452-exon-scaffold_201-1575043694:306465..307298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:306465..307298 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021896 | Transposase_37 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004803 | transposase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006313 | transposition, DNA-mediated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0004803 |
transposase activity |
Blast
The following BLAST results are available for this feature:
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