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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051460 ID=TCONS_00051460|Name=TCONS_00051460|organism=Clytia hemisphaerica|type=transcript|length=1028bp
CTTTGAGAAGTAAAGACATAATCTGAAAGGTTgagttttaaaatattatt
caGATAAATAAACACTGATTCTCCTTCAAAAGGAAAACAAACAGAGAAAT
CAAAAAGGCAccaaaaacaattattgtgATTGTCGAAGAAGTAAGGAGGG
TCGAAAGGAAATTGAAACTGAAAGTAACCATCAAAGAAATTTGAACAAAC
TATCGATCAACAACACGGCTAAGTAGGTTAGTACAGAATCCGAGCAAAGT
ATGGAACGAATCGATGTCAACTCCAACACAGTACAAACCAAACATCAATA
CGATGAAGAATGTTTAGACGAATGCGATGGAAAATCGACCAAACAACAGT
TAGGAGAAGTCATGCGTGTTTGTGCTATGTTCGCTCAACAACTCCAACAC
AAGTGCAAAGAATACAGTGAGGAACACTTTGTCTCTTTTGACAGTGTGGA
TCATACTGGCTCTATGGCGCCACCAACGGAGACGTACGAAAGCCAATGGC
AGTTCAAGTTCTTATTCCGTTTACCTGCAAATCTGAGTTCGTTCGACGCA
CTGACGGATCCCATTTATTTGTTAGCGGCCAAGCGAATAATTTATGACGT
TGGGCGGCATTTTTACAATATGGCGGAAAGCACAGGCGATACGATGATTA
GGGAAATCATGACTGCGCTTAGTAATGTCTTACAGCCGTTGGAAGGTGTC
GTTCCGCGGCTAGTCAACGAGACTAGTTTACAATGGCAACCTAGGGAGCA
AAAGATGGCGGATTTGGAGCGAGAGGCTGATTCAGTACCCGCTAAAGATT
GGCCCATTTGTAAAGAAGCTGGGTTAACAAGAGATGAGAAGCGACAGAAG
TTGATTAATTTGACCTTGATAAAACATTTGGAACATTTGATGACAGGTTT
GGAACACTCGGCAAGAGTCTTATATAACAAACATTAGAGACAACGCTTTT
CTATAGCACACTGACCGAATAGTCCAGCTTTTGAAAAAGACACTGcaagt
tttctaaaaaaacattaatttcaTCTTT Run BLAST on NCBI protein sequence of TCONS_00051460-protein >TCONS_00051460-protein ID=TCONS_00051460-protein|Name=TCONS_00051460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MERIDVNSNTVQTKHQYDEECLDECDGKSTKQQLGEVMRVCAMFAQQLQH
KCKEYSEEHFVSFDSVDHTGSMAPPTETYESQWQFKFLFRLPANLSSFDA
LTDPIYLLAAKRIIYDVGRHFYNMAESTGDTMIREIMTALSNVLQPLEGV
VPRLVNETSLQWQPREQKMADLEREADSVPAKDWPICKEAGLTRDEKRQK
LINLTLIKHLEHLMTGLEHSARVLYNKH Run BLAST on NCBI transcript from alignment at scaffold_201:497896..498923 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051460 ID=TCONS_00051460|Name=TCONS_00051460|organism=Clytia hemisphaerica|type=transcript|length=1028bp|location=Sequence derived from alignment at scaffold_201:497896..498923 (Clytia hemisphaerica)
AAAGAtgaaattaatgtttttttagaaaacttgCAGTGTCTTTTTCAAAA
GCTGGACTATTCGGTCAGTGTGCTATAGAAAAGCGTTGTCTCTAATGTTT
GTTATATAAGACTCTTGCCGAGTGTTCCAAACCTGTCATCAAATGTTCCA
AATGTTTTATCAAGGTCAAATTAATCAACTTCTGTCGCTTCTCATCTCTT
GTTAACCCAGCTTCTTTACAAATGGGCCAATCTTTAGCGGGTACTGAATC
AGCCTCTCGCTCCAAATCCGCCATCTTTTGCTCCCTAGGTTGCCATTGTA
AACTAGTCTCGTTGACTAGCCGCGGAACGACACCTTCCAACGGCTGTAAG
ACATTACTAAGCGCAGTCATGATTTCCCTAATCATCGTATCGCCTGTGCT
TTCCGCCATATTGTAAAAATGCCGCCCAACGTCATAAATTATTCGCTTGG
CCGCTAACAAATAAATGGGATCCGTCAGTGCGTCGAACGAACTCAGATTT
GCAGGTAAACGGAATAAGAACTTGAACTGCCATTGGCTTTCGTACGTCTC
CGTTGGTGGCGCCATAGAGCCAGTATGATCCACACTGTCAAAAGAGACAA
AGTGTTCCTCACTGTATTCTTTGCACTTGTGTTGGAGTTGTTGAGCGAAC
ATAGCACAAACACGCATGACTTCTCCTAACTGTTGTTTGGTCGATTTTCC
ATCGCATTCGTCTAAACATTCTTCATCGTATTGATGTTTGGTTTGTACTG
TGTTGGAGTTGACATCGATTCGTTCCATACTTTGCTCGGATTCTGTACTA
ACCTACTTAGCCGTGTTGTTGATCGATAGTTTGTTCAAATTTCTTTGATG
GTTACTTTCAGTTTCAATTTCCTTTCGACCCTCCTTACTTCTTCGACAAT
cacaataattgtttttggTGCCTTTTTGATTTCTCTGTTTGTTTTCCTTT
TGAAGGAGAATCAGTGTTTATTTATCtgaataatattttaaaactcAACC
TTTCAGATTATGTCTTTACTTCTCAAAG Coding sequence (CDS) from alignment at scaffold_201:497896..498923 >TCONS_00051460 ID=TCONS_00051460|Name=TCONS_00051460|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_201:497896..498923 (Clytia hemisphaerica)
CTAATGTTTGTTATATAAGACTCTTGCCGAGTGTTCCAAACCTGTCATCA
AATGTTCCAAATGTTTTATCAAGGTCAAATTAATCAACTTCTGTCGCTTC
TCATCTCTTGTTAACCCAGCTTCTTTACAAATGGGCCAATCTTTAGCGGG
TACTGAATCAGCCTCTCGCTCCAAATCCGCCATCTTTTGCTCCCTAGGTT
GCCATTGTAAACTAGTCTCGTTGACTAGCCGCGGAACGACACCTTCCAAC
GGCTGTAAGACATTACTAAGCGCAGTCATGATTTCCCTAATCATCGTATC
GCCTGTGCTTTCCGCCATATTGTAAAAATGCCGCCCAACGTCATAAATTA
TTCGCTTGGCCGCTAACAAATAAATGGGATCCGTCAGTGCGTCGAACGAA
CTCAGATTTGCAGGTAAACGGAATAAGAACTTGAACTGCCATTGGCTTTC
GTACGTCTCCGTTGGTGGCGCCATAGAGCCAGTATGATCCACACTGTCAA
AAGAGACAAAGTGTTCCTCACTGTATTCTTTGCACTTGTGTTGGAGTTGT
TGAGCGAACATAGCACAAACACGCATGACTTCTCCTAACTGTTGTTTGGT
CGATTTTCCATCGCATTCGTCTAAACATTCTTCATCGTATTGATGTTTGG
TTTGTACTGTGTTGGAGTTGACATCGATTCGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051460-exon-scaffold_201-1491911889:497896..498923 | TCONS_00051460-exon-scaffold_201-1491911889:497896..498923 | Clytia hemisphaerica | exon |
| TCONS_00051460-exon-scaffold_201-1510915933:497896..498923 | TCONS_00051460-exon-scaffold_201-1510915933:497896..498923 | Clytia hemisphaerica | exon |
| TCONS_00051460-exon-scaffold_201-1575043694:497896..498923 | TCONS_00051460-exon-scaffold_201-1575043694:497896..498923 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:497896..498923 . |
Blast
The following BLAST results are available for this feature:
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