TCONS_00051476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051476
Unique NameTCONS_00051476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051476 ID=TCONS_00051476|Name=TCONS_00051476|organism=Clytia hemisphaerica|type=transcript|length=1308bp
CAGACATCTGCCGATTATGCCCAAcgtttttgtttgataaaatgacTAGA
TTGGTTAAGATACTGAATAAATTATACTTATCTTTAGTGTTCTTATGTGC
AAGGCTTCAAGAAACCTTAAAGTGATTCTCATATTTACAAGCATTTATAT
AAGGAGCTGAAAAATATGTTGTTATATGCATTTTTGTTTCTCTACAACTT
AGAAACTGCTGCAATTTtaataatcatttttaaaagtttttttctggaaa
ttttctacaaaaatgGTGTCACTGCATTATTGTGATGGTAGGTTATTATC
AGAAGTATTGCTCTAGTATTGAATATAAAACAGAAGCATTTTAAATGGca
taatttttcatttccagAAGTTGCTTTATAAAAATTGCTAAAGATGGGTG
AAAAAAGTGTATTTGGTCTCTTGAATGGTTTGGCAAAAAGGTTATATTAT
GGTGAAAACAACATTACAGACGAATTTCTTCAGACACAACTCTACCCTGA
TTTAAACCAGGAAGAGTTCAACACAATCCTTTTGAAGTTTGaacaaatct
tgaaaaacattGCATACTCTAATATGGATCTGCGTCAACTGGATGCCTTT
TTGTCGTCGCAAGCCAAAAAGAAACCTGATTTTTTGAGTGAAGGAGACAT
CACTAGCATTACAAAATtctggaaacaaaataaatcgAAGATACATACAG
AGCTTCTAAATCGAAATATGGGAAGACGAGTGACAGCTGTCAAATGGAGA
ATTGCAGTCACTTCGAAAGGCAGTGAACAACAGGTAGATGAATCTAAAGT
AGTTTTTAATATCGAGACACAGGAAGGAGTTTCAGACACAGAATTTGTGC
GATTTGAAGCTAATGAAACTGAACTAGACTCAATGGTTaatgaaatagaa
aatattgaaaaaagaattgtaaattttgtacaacactaatgtttttttgg
aagaTTCAAAAGAATTGGattgaattttcatttaaatgttttggtcaata
aatatctaaaattaactttgaaagatttgtttttgaaacataaaaattaa
ttaAGTATCTTTTAGAACTGTTTGGAccaatttttgatttattttgttcA
TTAGCTGCATtactttttggtaaatttttccAGATAACAAATTTGTACAT
AATATATTACAAGTAGCATTTTATACATCACAAacctctatttctttttt
ttatgatttttgattttcttaacaAAGTTATTATAGGTTAAAGGATTCCA
TTTAATTGAACCAACTTTGCATATAAACAGACTAAAATATCTGATCTTAA
AATGAGTG
Run BLAST on NCBI

protein sequence of TCONS_00051476-protein

>TCONS_00051476-protein ID=TCONS_00051476-protein|Name=TCONS_00051476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MGEKSVFGLLNGLAKRLYYGENNITDEFLQTQLYPDLNQEEFNTILLKFE
QILKNIAYSNMDLRQLDAFLSSQAKKKPDFLSEGDITSITKFWKQNKSKI
HTELLNRNMGRRVTAVKWRIAVTSKGSEQQVDESKVVFNIETQEGVSDTE
FVRFEANETELDSMVNEIENIEKRIVNFVQH
Run BLAST on NCBI

transcript from alignment at scaffold_201:707140..708447

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051476 ID=TCONS_00051476|Name=TCONS_00051476|organism=Clytia hemisphaerica|type=transcript|length=1308bp|location=Sequence derived from alignment at scaffold_201:707140..708447 (Clytia hemisphaerica)
CACTCATTTTAAGATCAGATATTTTAGTCTGTTTATATGCAAAGTTGGTT
CAATTAAATGGAATCCTTTAACCTATAATAACTTtgttaagaaaatcaaa
aatcataaaaaaaagaaatagaggtTTGTGATGTATAAAATGCTACTTGT
AATATATTATGTACAAATTTGTTATCTggaaaaatttaccaaaaagtaAT
GCAGCTAATgaacaaaataaatcaaaaattggTCCAAACAGTTCTAAAAG
ATACTtaattaatttttatgtttcaaaaacaaatctttcaaagttaattt
tagatatttattgaccaaaacatttaaatgaaaattcaatCCAATTCTTT
TGAAtcttccaaaaaaacattagtgttgtacaaaatttacaattcttttt
tcaatattttctatttcattAACCATTGAGTCTAGTTCAGTTTCATTAGC
TTCAAATCGCACAAATTCTGTGTCTGAAACTCCTTCCTGTGTCTCGATAT
TAAAAACTACTTTAGATTCATCTACCTGTTGTTCACTGCCTTTCGAAGTG
ACTGCAATTCTCCATTTGACAGCTGTCACTCGTCTTCCCATATTTCGATT
TAGAAGCTCTGTATGTATCTTcgatttattttgtttccagaATTTTGTAA
TGCTAGTGATGTCTCCTTCACTCAAAAAATCAGGTTTCTTTTTGGCTTGC
GACGACAAAAAGGCATCCAGTTGACGCAGATCCATATTAGAGTATGCaat
gtttttcaagatttgttCAAACTTCAAAAGGATTGTGTTGAACTCTTCCT
GGTTTAAATCAGGGTAGAGTTGTGTCTGAAGAAATTCGTCTGTAATGTTG
TTTTCACCATAATATAACCTTTTTGCCAAACCATTCAAGAGACCAAATAC
ACTTTTTTCACCCATCTTTAGCAATTTTTATAAAGCAACTTctggaaatg
aaaaattatgCCATTTAAAATGCTTCTGTTTTATATTCAATACTAGAGCA
ATACTTCTGATAATAACCTACCATCACAATAATGCAGTGACACcattttt
gtagaaaatttccagaaaaaaacttttaaaaatgattattaAAATTGCAG
CAGTTTCTAAGTTGTAGAGAAACAAAAATGCATATAACAACATATTTTTC
AGCTCCTTATATAAATGCTTGTAAATATGAGAATCACTTTAAGGTTTCTT
GAAGCCTTGCACATAAGAACACTAAAGATAAGTATAATTTATTCAGTATC
TTAACCAATCTAgtcattttatcaaacaaaaacgTTGGGCATAATCGGCA
GATGTCTG

Coding sequence (CDS) from alignment at scaffold_201:707140..708447

>TCONS_00051476 ID=TCONS_00051476|Name=TCONS_00051476|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_201:707140..708447 (Clytia hemisphaerica)
ttagtgttgtacaaaatttacaattcttttttcaatattttctatttcat
tAACCATTGAGTCTAGTTCAGTTTCATTAGCTTCAAATCGCACAAATTCT
GTGTCTGAAACTCCTTCCTGTGTCTCGATATTAAAAACTACTTTAGATTC
ATCTACCTGTTGTTCACTGCCTTTCGAAGTGACTGCAATTCTCCATTTGA
CAGCTGTCACTCGTCTTCCCATATTTCGATTTAGAAGCTCTGTATGTATC
TTcgatttattttgtttccagaATTTTGTAATGCTAGTGATGTCTCCTTC
ACTCAAAAAATCAGGTTTCTTTTTGGCTTGCGACGACAAAAAGGCATCCA
GTTGACGCAGATCCATATTAGAGTATGCaatgtttttcaagatttgttCA
AACTTCAAAAGGATTGTGTTGAACTCTTCCTGGTTTAAATCAGGGTAGAG
TTGTGTCTGAAGAAATTCGTCTGTAATGTTGTTTTCACCATAATATAACC
TTTTTGCCAAACCATTCAAGAGACCAAATACACTTTTTTCACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032630XLOC_032630Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051476-proteinTCONS_00051476-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051476-exon-scaffold_201-1491911889:707140..708447TCONS_00051476-exon-scaffold_201-1491911889:707140..708447Clytia hemisphaericaexon
TCONS_00051476-exon-scaffold_201-1510915933:707140..708447TCONS_00051476-exon-scaffold_201-1510915933:707140..708447Clytia hemisphaericaexon
TCONS_00051476-exon-scaffold_201-1575043694:707140..708447TCONS_00051476-exon-scaffold_201-1575043694:707140..708447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:707140..708447 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.0433	13.7882	3.17995	2.2171	9.44685	6.05458	8.75722	9.79145	8.97708	6.90761	9.48469	4.83739	4.78773	3.96876	4.601	4.30809	5.81613	3.67616	2.47077	2.58549	3.90149	3.56243	17.8036	16.1524	5.78815	6.92896	2.87721	1.98411	7.13023	8.68829
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003594HATPase_C
IPR033776COMMD1_N
IPR017920COMM
Blast
[Close]
BLAST of TCONS_00051476 vs. Swiss-Prot (Human)
Match: COMD1 (COMM domain-containing protein 1 OS=Homo sapiens GN=COMMD1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.391e-28
Identity = 65/187 (34.76%), Postives = 106/187 (56.68%), Query Frame = 1 
Query:  397 GEKSVFGLLNGLAKRLYYGENNITDEFLQTQLYPDLNQEEFNTILLKFEQILKNIAYSNMDLRQLDAFLSSQAKKKPDFLSEGDITS-----ITKFWKQNKSKIHTELLNR---NMGRRVTAVKWRIAVTSKGSEQ-QVDESKVVFNIETQEGVSDTEFVRFEANETELDSMVNEIENIEKRIVNFV 930
            G K + GLLN LA+  ++G   IT+E L++QLYP++  EEF   L K   ILK+IA ++MD  QL+AFL++Q KK      +G ITS     I+KFWK +K+KI   L+N+   N G R   + WR+   S+     Q+     +  +E  +   ++EF+  E +E +++ ++  +  +E+ I   +
Sbjct:    8 GGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKK------QGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR--GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEESISTLI 186
The following BLAST results are available for this feature:
BLAST of TCONS_00051476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COMD14.391e-2834.76COMM domain-containing protein 1 OS=Homo sapiens G... [more]
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