TCONS_00051500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051500
Unique NameTCONS_00051500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051500 ID=TCONS_00051500|Name=TCONS_00051500|organism=Clytia hemisphaerica|type=transcript|length=868bp
GCGTTTAAGCTTGCAACACACGTTTTTGGAAAACTCTTCAAAACTGCTTC
TTTTGAATTTGGGCTTGCTACTGAAGACATTTGTGCAGAGAACCCTTTCA
AATCTCATCCAAAACTCTGAAATAAAACATTACAAAGATGAGCCAAGAAC
ACGTATTTGAAATCGTTACTTTAATTGATCAATCACCCCTAACGTTACAC
GTCACCACAACCCAATCAACATCAACTCAACCTCTACAGGGATTAACAGT
AACCCAATCGCTACAGGAATCAACATCAACCCAATTGCTACACGTATCAA
CACCAACCCAGTCAACACACGTATCAACACCAACCCAGTCGACACACGTA
TCAACACCAACCCAGTCGACACACGTATCAATACCAACCCAGTCGACACA
CGTATCAATATCAACCCACCAGTCGCCGCACATATCAACATCAACCCAGT
TGCCGCACATATCAACATCACCACTAAACACCACCTCAACAGCATCAACC
TCCATTCCAACAAGGATCCTTTGCAATGCCATACCTGTGAAGCCAAGAAG
GTCGAGACTCAACCCAGCAATCCAAAATGCCAAAATTAAGGCACCAGAAT
CAGTGGTTGTTTATAATAAGGATGGAGAAGAGGTATCGATCGTTGCACGA
AAGAAAGAGGGTGCTGTACATCGTGGGGAAAAATTTGCTGATGTTTTGAA
GGACAGAACAGACGCAAGACGTACATACACAAATTCGTTCATCAGTAAAT
TAATACAATATAAGAAAAGGACCAGTGATGATGGCCTAGTTGTCCTTCAT
GACAAAGAcagagaagaaaaatatttctacaCCACAGACAAAGACAATCT
GACTTACGACCTGAATTC
Run BLAST on NCBI

protein sequence of TCONS_00051500-protein

>TCONS_00051500-protein ID=TCONS_00051500-protein|Name=TCONS_00051500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MSQEHVFEIVTLIDQSPLTLHVTTTQSTSTQPLQGLTVTQSLQESTSTQL
LHVSTPTQSTHVSTPTQSTHVSTPTQSTHVSIPTQSTHVSISTHQSPHIS
TSTQLPHISTSPLNTTSTASTSIPTRILCNAIPVKPRRSRLNPAIQNAKI
KAPESVVVYNKDGEEVSIVARKKEGAVHRGEKFADVLKDRTDARRTYTNS
FISKLIQYKKRTSDDGLVVLHDKDREEKYFYTTDKDNLTYDLN
Run BLAST on NCBI

transcript from alignment at scaffold_202:466726..468128+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051500 ID=TCONS_00051500|Name=TCONS_00051500|organism=Clytia hemisphaerica|type=transcript|length=1403bp|location=Sequence derived from alignment at scaffold_202:466726..468128+ (Clytia hemisphaerica)
GCGTTTAAGCTTGCAACACACGTTTTTGGAAAACTCTTCAAAACTGCTTC
TTTTGAATTTGGGCTTGCTACTGAAGACATTTGTGCAGAGAACCCTTTCA
AATCTCATCCAAAACTCTGAAATAAAACAGTAAGTGATCTTCTTAATCTA
GTATTGTCTCTATAGCACCTTATTTCTTCATTTCTACATTGCTTAAGTTT
GGCCTCAATGATAAAGGAATACAGTCAATGATTTTTGATccttttaaatg
aattttctgttttaaaataatattatatcCTTATTCCTACAAAATACGAA
GTTATGTGTATATAAAAACTGCCTATCAACTTTAAGTAGGGAAAGTTTTA
TAAGTATCTTTGTATGAATTGTACAAACAAGATCTCTTATTAAGCTAAAG
GCTTGTGTTTGATTTCGTGGAAATGAAttctataagaaaaaaaactatCT
AATCCTTTATAAATTGGTTTTTAGTTCTTGAAAGTCTGAGAATGTGATCA
CATTTCTAGTTAAAATAACAGTTAAGAACATAATATAAAACAAATATTAT
TTATATACTTTATTTCAGTTACAAAGATGAGCCAAGAACACGTATTTGAA
ATCGTTACTTTAATTGATCAATCACCCCTAACGTTACACGTCACCACAAC
CCAATCAACATCAACTCAACCTCTACAGGGATTAACAGTAACCCAATCGC
TACAGGAATCAACATCAACCCAATTGCTACACGTATCAACACCAACCCAG
TCAACACACGTATCAACACCAACCCAGTCGACACACGTATCAACACCAAC
CCAGTCGACACACGTATCAATATCAACCCAGTCGACACACGTATCAACAC
CAACCCAGTCGACACACGTATCAACACCAACCCAGTCGACACACGTATCA
ATATCAACCCACCAGTCGCCGCACATATCAACATCAACCCAGTTGCCGCA
CATATCAACATCAACCCAGTTGCCGCACATATCAACATCACAAATTTTCA
CATCACCACTAAACACCACCTCAACAGCATCAACCTCCATTCCAACAAGG
ATCCTTTGCAATGCCATACCTGTGAAGCCAAGAAGGTCGAGACTCAACCC
AGCAATCCAAAATGCCAAAATTAAGGCACCAGAATCAGTGGTTGTTTATA
ATAAGGATGGAGAAGAGGTATCGATCGTTGCACGAAAGAAAGAGGGTGCT
GTACATCGTGGGGAAAAATTTGCTGATGTTTTGAAGGACAGAACAGACGC
AAGACGTACATACACAAATTCGTTCATCAGTAAATTAATACAATATAAGA
AAAGGACCAGTGATGATGGCCTAGTTGTCCTTCATGACAAAGAcagagaa
gaaaaatatttctacaCCACAGACAAAGACAATCTGACTTACGACCTGAA
TTC

Coding sequence (CDS) from alignment at scaffold_202:466726..468128+

>TCONS_00051500 ID=TCONS_00051500|Name=TCONS_00051500|organism=Clytia hemisphaerica|type=CDS|length=2187bp|location=Sequence derived from alignment at scaffold_202:466726..468128+ (Clytia hemisphaerica)
ATGAGCCAAGAACACGTATTTGAAATCGTTACTTTAATTGATCAATCACC
CCTAACGTTACACGTCACCACAACCCAATCAACATCAACTCAACCTCTAC
AGGGATTAACAGTAACCCAATCGCTACAGGAATCAACATCAACCCAATTG
CTACACGTATCAACACCAACCCAGTCAACACACGTATCAACACCAACCCA
GTCGACACACGTATCAACACCAACCCAGTCGACACACGTATCAATACCAA
CCCAGTCGACACACGTATCAATATCAACCCACCAGTCGCCGCACATATCA
ACATCAACCCAGTTGCCGCACATATCAACATCACCACTAAACACCACCTC
AACAGCATCAACCTCCATTCCAACAAGGATCCTTTGCAATGCCATACCTG
TGAAGCCAAGAAGGTCGAGACTCAACCCAGCAATCCAAAATGCCAAAATT
AAGGCACCAGAATCAGTGGTTGTTTATAATAAGGATGGAGAAGAGGTATC
GATCGTTGCACGAAAGAAAGAGGGTGCTGTACATCGTGGGGAAAAATTTG
CTGATGTTTTGAAGGACAGAACAGACGCAAGACGTACATACACAAATTCG
TTCATCAGTAAATTAATACAATATAAGAAAAGGACCAGTGATGATGGCCT
AGTTGTCCTTCATGACAAAGAcagagaagaaaaatatttctacaCCACAG
ACAAAGACAATCTGACTTACGACCTGAATATGAGCCAAGAACACGTATTT
GAAATCGTTACTTTAATTGATCAATCACCCCTAACGTTACACGTCACCAC
AACCCAATCAACATCAACTCAACCTCTACAGGGATTAACAGTAACCCAAT
CGCTACAGGAATCAACATCAACCCAATTGCTACACGTATCAACACCAACC
CAGTCAACACACGTATCAACACCAACCCAGTCGACACACGTATCAACACC
AACCCAGTCGACACACGTATCAATACCAACCCAGTCGACACACGTATCAA
TATCAACCCACCAGTCGCCGCACATATCAACATCAACCCAGTTGCCGCAC
ATATCAACATCACCACTAAACACCACCTCAACAGCATCAACCTCCATTCC
AACAAGGATCCTTTGCAATGCCATACCTGTGAAGCCAAGAAGGTCGAGAC
TCAACCCAGCAATCCAAAATGCCAAAATTAAGGCACCAGAATCAGTGGTT
GTTTATAATAAGGATGGAGAAGAGGTATCGATCGTTGCACGAAAGAAAGA
GGGTGCTGTACATCGTGGGGAAAAATTTGCTGATGTTTTGAAGGACAGAA
CAGACGCAAGACGTACATACACAAATTCGTTCATCAGTAAATTAATACAA
TATAAGAAAAGGACCAGTGATGATGGCCTAGTTGTCCTTCATGACAAAGA
cagagaagaaaaatatttctacaCCACAGACAAAGACAATCTGACTTACG
ACCTGAATATGAGCCAAGAACACGTATTTGAAATCGTTACTTTAATTGAT
CAATCACCCCTAACGTTACACGTCACCACAACCCAATCAACATCAACTCA
ACCTCTACAGGGATTAACAGTAACCCAATCGCTACAGGAATCAACATCAA
CCCAATTGCTACACGTATCAACACCAACCCAGTCAACACACGTATCAACA
CCAACCCAGTCGACACACGTATCAACACCAACCCAGTCGACACACGTATC
AATACCAACCCAGTCGACACACGTATCAATATCAACCCACCAGTCGCCGC
ACATATCAACATCAACCCAGTTGCCGCACATATCAACATCACCACTAAAC
ACCACCTCAACAGCATCAACCTCCATTCCAACAAGGATCCTTTGCAATGC
CATACCTGTGAAGCCAAGAAGGTCGAGACTCAACCCAGCAATCCAAAATG
CCAAAATTAAGGCACCAGAATCAGTGGTTGTTTATAATAAGGATGGAGAA
GAGGTATCGATCGTTGCACGAAAGAAAGAGGGTGCTGTACATCGTGGGGA
AAAATTTGCTGATGTTTTGAAGGACAGAACAGACGCAAGACGTACATACA
CAAATTCGTTCATCAGTAAATTAATACAATATAAGAAAAGGACCAGTGAT
GATGGCCTAGTTGTCCTTCATGACAAAGAcagagaagaaaaatatttcta
caCCACAGACAAAGACAATCTGACTTACGACCTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032641XLOC_032641Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051500-proteinTCONS_00051500-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051500-exon-scaffold_202-1491911889:466726..466854TCONS_00051500-exon-scaffold_202-1491911889:466726..466854Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1510915933:466726..466854TCONS_00051500-exon-scaffold_202-1510915933:466726..466854Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1575043694:466726..466854TCONS_00051500-exon-scaffold_202-1575043694:466726..466854Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1491911889:467294..467546TCONS_00051500-exon-scaffold_202-1491911889:467294..467546Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1510915933:467294..467546TCONS_00051500-exon-scaffold_202-1510915933:467294..467546Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1575043694:467294..467546TCONS_00051500-exon-scaffold_202-1575043694:467294..467546Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1491911889:467601..467684TCONS_00051500-exon-scaffold_202-1491911889:467601..467684Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1510915933:467601..467684TCONS_00051500-exon-scaffold_202-1510915933:467601..467684Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1575043694:467601..467684TCONS_00051500-exon-scaffold_202-1575043694:467601..467684Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1491911889:467727..468128TCONS_00051500-exon-scaffold_202-1491911889:467727..468128Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1510915933:467727..468128TCONS_00051500-exon-scaffold_202-1510915933:467727..468128Clytia hemisphaericaexon
TCONS_00051500-exon-scaffold_202-1575043694:467727..468128TCONS_00051500-exon-scaffold_202-1575043694:467727..468128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:466726..468128 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0726005	0	0.0692143	0.0647976	0.0453663	0	0.0545428	0.107563	0	0	0	0.032806	0	0	0	0	0	0	0	0	0	0.051586	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top