TCONS_00051504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051504
Unique NameTCONS_00051504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1033

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051504 ID=TCONS_00051504|Name=TCONS_00051504|organism=Clytia hemisphaerica|type=transcript|length=1033bp
TTGCAATCGAATTCAATAACACGAACATAGATAATCTCTGGTGCAATTAC
TTTGTTCTGAGAGTAATCTGAAAACCTAATGTGATTGGATtgattttcga
taaatttgGCATAACCAGCATAATTTATTTTTACAGGAtttttagaatga
aatacaatCTCTAATGGTTCTTTGTTTAACATTTTCCGTCTCTCGTTGAC
GTTTTTTGTAATCCACATAGCCGGCGGTAGGTAAGCATCagttaaatgaa
aaattgtgaTGTGAATTTCATCAACATCTTTCAAACAAGTCTCATTGAAG
AGATGTTTAGACATTGGTAGCGATTGATAAAACTGATATCTGTTATAATC
AGGGTTCTTTATGAGATTGACCAAATCTGCTAGATGTTGATGAAGATACA
TTTTGGTTGTAAATCTATGGTAGTCTGTAAATAAGAGTCTGTGTACTGGC
ATCCAGAATTCTGAAGGACATGATTCTTGATCACAAAGAACAATAACATT
CCAGCTATCATCTTGAAGTTTCTTAAGTGTGTTAGAAAGGCTCATATCTT
TAGACCACTTATGGTAAGTCGCAAAGAAAAATGTCTGATCGAAAGAACCG
TCATTACTTGACGTAAGTCCATCTTTATGTAATTTTTCGAGGAAACTCAA
AACCCTTTTCTCAATCGTCGAAAAGTAATCAGGACTGGCTTCCACTGGGT
CCGTCAACTGTCTCTCTACATGGTTGACCGTATTTTCATCCCAACGTATA
ACACGATCTTCATTTGGTAAATATATATTTATTGTAATGCAAGGATGATT
CTCTGCTATCTCTGGTAAATGATAGTTCAAAAACCCATCACGCATTGTCC
TGATCATACCCTGCATAAAAATAGTGACATTTCTATTTTGAGTACAACTC
AGTGTTCGAAAGTCTGTTGATTTGTTTAGAATGTCGGTCCCAGTAAAGCA
AAACACTTGAAAAGTTAATACGAGAAAACTAGTGAACATTTTTTAAGACA
AATTTTCTCAACTAATCTTTCACTCTCTATATA
Run BLAST on NCBI

transcript from alignment at scaffold_202:519905..530628+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051504 ID=TCONS_00051504|Name=TCONS_00051504|organism=Clytia hemisphaerica|type=transcript|length=10724bp|location=Sequence derived from alignment at scaffold_202:519905..530628+ (Clytia hemisphaerica)
TTGCAATCGAATTCAATAACACGAACATAGATAATCTCTGGTGCAATTAC
TTTGTTCTGAGAGTAATCTGAAAACCTAATGTGATTGGATtgattttcga
taaatttgGCATAACCAGCATAATTTATTTTTACAGGAtttttagaatga
aatacaatCTCTAATGGTTCTTTGTTTAACATTTTCCGTCTCTCGTTGAC
GTTTTTTGTAATCCACATAGCCGGCGGTAGGTAAGCATCagttaaatgaa
aaattgtgaTGTGAATTTCATCAACATCTTTCAAACAAGTCTCATTGAAG
AGATGTTTAGACATTGGTAGCGATTGATAAAACTGATATCTGTTATAATC
AGGGTTCTTTATGAGATTGACCAAATCTGCTAGATGTTGATGAAGATACA
TTTTGGTATTAAATATATATAAATCTGTAAATAAGAGTCTGTGTATTGGC
ATCCAGTATTCTGAAGGACATGATTCCTGATCACAAAGAACAATAACATT
CCAGCTATCATCTTGAAGTTTCTTAAGTGTGTTAGAAAGACTCATAGCGT
TAGACCACTTATAGAAAGTCGCAAAGAAAATTGTCTGATCAAAAGAATCA
TCGTTACTTGATATTAGTCCATCTTTATCATTATGTATTTCTTCAAGGAG
ACTTAAAACCCTTTTATTAATCGTCGAAAAGTAATCAGGACTGGCGTATC
CCATTTGGTCCACCATCTGTCTCTCGACATGGTTGATCGTATTTTCATCC
CAACGTATAACACGATCTTCATTCGGCAAATATATATTTATTGCAATGCA
AGGATGATTCTCTGCTATCTCTGGTAAATTATAGTTCAAAAACACATCAC
GCATTTCTCTGATCATTCCATGCATAAAAATAGTGACATTTCTATTTTGA
GTACAACTCAGTGTTCGAAAGTCTGTTGATCTGTTTAGAATGTCAGTCCC
AGTAAagcaaaaaacttgaaaagttaATACGAGAAAAATAGTGAACATTT
TTTAAGACAAATTTTCTCAACTAATCTTTCACTCTCTATGTAtacttttt
gatgtgaaaagagatatctctctctctttttccTTAAATCATATTATGGT
CCTACTTTTCTACTTCGGATTTGATTAATTTAAGTTAATTATCAATCCTA
TTTCAttccatggaggtataaagaaacaggagaagtatgctattgtaacc
atgctcgccctacgattaaaaaagttacgaggtatgcatgctcataatct
catatatcgtgcatttttaataagctcttttgttgataggtgaaatctta
ttggctaacttaagtattggaaataagatgagacgagattcattgtatat
gacattggtgtaagaaaatatttggattaaaaaagggcctgtaaactttg
caatccttcatcaaatgacaagatttttcgatcaacattttcttcaaggt
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NNNNNNNNNctaacctaaggttgaactaccactggtgtaaaaatgaacgt
tatagcataagtagaaaaaaagctcaatttttgcaatagcaaatttaacc
gctaaaaattgcgaatttttcaaccaaaaatacattctaatatagcgctt
ttgattctctgaaacaagcaaaaaacatttccataattatatttgactat
caaaagttacaggcattcttgtttccactgccaattatatctggacagac
tttagttgaTGACTCGGACACTATGGAAAGTTTTGATGAATTGTTTGAAC
TCATAAACAGAGATATTTGTGCGGATAATTAATAAcacgtcaaaaaatat
tcaaagccTTCACCTTCTTAATATTACCGAGTTtgtgtatgtgtgttttt
ctgcgacggagccAGTAAGATGTTCTGATTTGTCTTGATCCtaaccagct
gaggacgacggtaaatcagtgCTTTGGGACCGTCCTCGAACCGCGGGTTA
TTCCTATAAATCACTTTAGTTATTCTACTGTCCTcgaaagtgcaaataca
taaactcgctattttcagttttaagcctaaaaatattcttttttctactg
ttttgtgattatttttgtgtaatttcctaactaaagaaaaaaaaattcgt
gtcGGCACGAATCCAAGGGTTAATTTGGTGGTGTGTTCagaatttcattg
aaattcGACACTTACTTACTCATTTTATCAAGTATCTCTTCGACTAAAGA
AATCTCTAAAAGGGTCCTTAAAAAAATTGCGGTAATACACgctttcttat
aagaatatatACTATAACTATAACGTAACATAAAAAATTGGaagtataaa
gaaaaataataaagaaaaattatttcatggttttttattgcaaaaaaaaa
atactgatAAGGCTTTTTCCGGACACACTGTATAAACCTCAAAAGTTGTC
GCGAGCCATAGTTccatttacatgtttttttattcattcataagaataaa
atattaacaaaacttTGACATAATTTTAAGGTTCTGCGGACTCAAACACA
CCTAATGTCTTaagaaaatacacaaaaatgctcacaaagtgatgaaaata
agaacatattattaaacagttaagaatattttaagaatttgcaaaaaaag
acgCAATTTCtttagcaagtttatgtatttgcactttcgaggacggtaga
gtgacttaAGCGATTTGgcggaataacccgcagttctgacccgctaaatc
gaggacagtaaaagcgctgatttaccgtcgtcctcagctggtcaggatca
aGACAAATTAGAACCCTACTGTCTCCGCTGCAGAAAAACAcatatacata
aactcggtaatgttAAGAAGGTGAAAGATTTGAACATTTTTCGACGTGTT
ATTAATTATCCGCACAAATATCTCTGTTTATAAGTTCAAACAATTCATCA
AAACTTTCCATAGTGTCCGAGTCATCAACGAAAGGACATTCCACATCNNN
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TTcgcagataagaaaataaactatgtaagaacataaggttacgatagcaa
aaatattaacaaaacgttaaaataattttaaggctttgcagactcaaaCA
CACCTAATGTCTTaagaaaatacacaaaaatgctcacaaagtgatgaaaa
taagaacatattattaaacagttaagaatattttaagaatttgcaaaaaa
agacgCAATTTCtttagcaagtttatgtatttgcactttcgaggacggta
gagtgacttaAGCGATTTGgcggaataacccgcagttctgacccgctaaa
tcgaggacagtaaaagcgctgatttaccgtcgtcctcagctggtcaggat
caaGACAAATTAGAACCCTACTGTCTCCGCTGCAGAAAAACAcatataca
taaactcggtaatgttAAGAAGGTGAAAGATTTGAACATTTTTCGACGTG
TTATTAATTATCCGCACAAATATCTCTGTTTATAAGTTCAAACAATTCAT
CAAAACTTTCCATAGTGTCCGAGTCATCAACGAAAGGACATTCCACATCT
TTCATTTTATATATCTTTTGCTTTGGCGTAAACAAATGCGGTTTATAATT
GCAATTGAATTCAATAAAACGAACATGCAAAATCTCTGGTGTAATTACAA
TGTTTTGAGAGGAATCTGAAAACCTGATGTGATTGGATTGATTCTCGATA
AATGTTGCATAGTCAGCGAAACTTTTCACACGATTTCTTTCTGTATGGTT
CAGAAACCTGGTCCCTtaccaaaaagtttgaaaagcaaCTAGACGGTACC
TATACCAGACTTCTGAGAAGGGTTGAAAATCTCTCTTGGCGTGACCATCC
AACAAAACGCACCATATATGGTTCCCTGAAACCAATCTCTCTCCTCCTTA
AAGCCAAGCGCGTTCAATTTGCTGGTCATTGTTTCCGTGCCTCATCTGAG
GTTATTTCCTCCCTATTGCTTTGGAAACCTAAANNNNNNNNNNNNNNNNN
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cagataagaaaataaactatgtaagaacataaggttacgatagcaaaaat
attaacaaaacgttaaaataattttaaggctttgcagactcaaaCACACC
TAATGTCTTaagaaaatacacaaaaatgctcacaaagtgatgaaaataag
aacatattattaaacagttaagaatattttaagaatttgcaaaaaaagac
gCAATTTCtttagcaagtttatgtatttgcactttcgaggacggtagagt
gacttaAGCGATTTGgcggaataacccgcagttctgacccgctaaatcga
ggacagtaaaagcgctgatttaccgtcgtcctcagctggtcaggatcaaG
ACAAATTAGAACCCTACTGTCTCCGCTGCAGAAAAACAcatatacataaa
ctcggtaatgttAAGAAGGTGAAAGATTTGAACATTTTTCGACGTGTTAT
TAATTATCCGCACAAATATCTCTGTTTATAAGTTCAAACAATTCATCAAA
ACTTTCCATAGTGTCCGAGTCATCAACGAAAGGACATTCCACATCTTtca
ttttatacattttttccTTCGGCGTAAACAAATGCGGTTTATAATTGCAA
TCGAATTCAATAACACGAACATAGATAATTTCTGGTGCAATTACTTTGTT
CTGACCGTAATCTGAAAACCTAATGTGATTGGATTGATTCTCGATAAATG
TTGCATAGTTAGCGAAACTTTTCACAAGATTTCTAGAATGAAATACTATC
TCTAATGGTTCTTTGTTTAACCTTTTTCGTCTCTCGTTGACGTTTTTTGT
AACCCACATAGCCGGCGGCAGGTAGGCATCAGTTaaatgaaaagttttga
tatgaATTTCCTCAATATCTTTCAAACAAGTCTCATTGAAGAGATGTTTA
GACATTGGTAGCGATTGAGAAAACTGATATCTGTTATAATCAGGGTTCTT
TATGAGATTGGTCAAATCTGCTAGATGCTGATGAAGATACATTTTGGTTG
TAAATCTATGGTAGTCTGTAAATAAGAGTCTGTGTACTGGCATCCAGAAT
TCTGAAGGACATGATTCTTGATCACAAAGAACAATAACATTCCAGCTATC
ATCTTGAAGTTTCTTAAGTGTGTTAGAAAGGCTCATATCTTTAGACCACT
TATGGTAAGTCGCAAAGAAAAATGTCTGATCGAAAGAACCGTCATTACTT
GACGTAAGTCCATCTTTATGTAATTTTTCGAGGAAACTCAAAACCCTTTT
CTCAATCGTCGAAAAGTAATCAGGACTGGCTTCCACTGGGTCCGTCAACT
GTCTCTCTACATGGTTGACCGTATTTTCATCCCAACGTATAACACGATCT
TCATTTGGTAAATATATATTTATTGTAATGCAAGGATGATTCTCTGCTAT
CTCTGGTAAATGATAGTTCAAAAACCCATCACGCATTGTCCTGATCATAC
CCTGCATAAAAATAGTGACATTTCTATTTTGAGTACAACTCAGTGTTCGA
AAGTCTGTTGATTTGTTTAGAATGTCGGTCCCAGTAAAGCAAAACACTTG
AAAAGTTAATACGAGAAAACTAGTGAACATTTTTTAAGACAAATTTTCTC
AACTAATCTTTCACTCTCTATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032642XLOC_032642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051504-exon-scaffold_202-1491911889:519905..520303TCONS_00051504-exon-scaffold_202-1491911889:519905..520303Clytia hemisphaericaexon
TCONS_00051504-exon-scaffold_202-1510915933:519905..520303TCONS_00051504-exon-scaffold_202-1510915933:519905..520303Clytia hemisphaericaexon
TCONS_00051504-exon-scaffold_202-1575043694:519905..520303TCONS_00051504-exon-scaffold_202-1575043694:519905..520303Clytia hemisphaericaexon
TCONS_00051504-exon-scaffold_202-1491911889:529995..530628TCONS_00051504-exon-scaffold_202-1491911889:529995..530628Clytia hemisphaericaexon
TCONS_00051504-exon-scaffold_202-1510915933:529995..530628TCONS_00051504-exon-scaffold_202-1510915933:529995..530628Clytia hemisphaericaexon
TCONS_00051504-exon-scaffold_202-1575043694:529995..530628TCONS_00051504-exon-scaffold_202-1575043694:529995..530628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:519905..530628 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.911476	0.746739	0.230066	0.206918	0.241151	0.128949	0.168585	0.3562	0.333175	0.222483	0	0.0734412	0	0.189952	0	0	0.334664	0.0647379	0.472556	0.607996	0.196769	0.118567	0.93057	0.907948	0.159613	0.410598	0.985554	1.58168	0.343444	0.208592
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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