TCONS_00051505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051505
Unique NameTCONS_00051505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051505 ID=TCONS_00051505|Name=TCONS_00051505|organism=Clytia hemisphaerica|type=transcript|length=765bp
CTTTCAAACAAGTCTCATTGAAGAGATGTTTAGACATTGGTAGCGATTGA
TAAAACTGATATCTGTTATAATCAGGGTTCTTTATGAGATTGACCAAATC
TGCTAGATGTTGATGAAGATACATTTTGGTATTAAATATATATAAATCTG
TAAATAAGAGTCTGTGTATTGGCATCCAGTATTCTGAAGGACATGATTCC
TGATCACAAAGAACAATAACATTCCAGCTATCATCTTGAAGTTTCTTAAG
TGTGTTAGAAAGACTCATAGCGTTAGACCACTTATAGAAAGTCGCAAAGA
AAATTGTCTGATCAAAAGAATCATCGTTACTTGATATTAGTCCATCTTTA
TCATTATGTATTTCTTCAAGGAGACTTAAAACCCTTTTATTAATCGTCGA
AAAGTAATCAGGACTGGCGTATCCCATTTGGTCCACCATCTGTCTCTCGA
CATGGTTGATCGTATTTTCATCCCAACGTATAACACGATCTTCATTCGGC
AAATATATATTTATTGCAATGCAAGGATGATTCTCTGCTATCTCTGGTAA
ATTATAGTTCAAAAACACATCACGCATTTCTCTGATCATTCCATGCATAA
AAATAGTGACATTTCTATTTTGAGTACAACTCAGTGTTCGAAAGTCTGTT
GATTTGTTTAGAATGTCGGTCCCAGTAAAGCAAAACACTTGAAAAGTTAA
TACGAGAAAACTAGTGAACATTTTTTAAGACAAATTTTCTCAACTAATCT
TTCACTCTCTATATA
Run BLAST on NCBI

transcript from alignment at scaffold_202:520182..530628+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051505 ID=TCONS_00051505|Name=TCONS_00051505|organism=Clytia hemisphaerica|type=transcript|length=10447bp|location=Sequence derived from alignment at scaffold_202:520182..530628+ (Clytia hemisphaerica)
CTTTCAAACAAGTCTCATTGAAGAGATGTTTAGACATTGGTAGCGATTGA
TAAAACTGATATCTGTTATAATCAGGGTTCTTTATGAGATTGACCAAATC
TGCTAGATGTTGATGAAGATACATTTTGGTATTAAATATATATAAATCTG
TAAATAAGAGTCTGTGTATTGGCATCCAGTATTCTGAAGGACATGATTCC
TGATCACAAAGAACAATAACATTCCAGCTATCATCTTGAAGTTTCTTAAG
TGTGTTAGAAAGACTCATAGCGTTAGACCACTTATAGAAAGTCGCAAAGA
AAATTGTCTGATCAAAAGAATCATCGTTACTTGATATTAGTCCATCTTTA
TCATTATGTATTTCTTCAAGGAGACTTAAAACCCTTTTATTAATCGTCGA
AAAGTAATCAGGACTGGCGTATCCCATTTGGTCCACCATCTGTCTCTCGA
CATGGTTGATCGTATTTTCATCCCAACGTATAACACGATCTTCATTCGGC
AAATATATATTTATTGCAATGCAAGGATGATTCTCTGCTATCTCTGGTAA
ATTATAGTTCAAAAACACATCACGCATTTCTCTGATCATTCCATGCATAA
AAATAGTGACATTTCTATTTTGAGTACAACTCAGTGTTCGAAAGTCTGTT
GATCTGTTTAGAATGTCAGTCCCAGTAAagcaaaaaacttgaaaagttaA
TACGAGAAAAATAGTGAACATTTTTTAAGACAAATTTTCTCAACTAATCT
TTCACTCTCTATGTAtactttttgatgtgaaaagagatatctctctctct
ttttccTTAAATCATATTATGGTCCTACTTTTCTACTTCGGATTTGATTA
ATTTAAGTTAATTATCAATCCTATTTCAttccatggaggtataaagaaac
aggagaagtatgctattgtaaccatgctcgccctacgattaaaaaagtta
cgaggtatgcatgctcataatctcatatatcgtgcatttttaataagctc
ttttgttgataggtgaaatcttattggctaacttaagtattggaaataag
atgagacgagattcattgtatatgacattggtgtaagaaaatatttggat
taaaaaagggcctgtaaactttgcaatccttcatcaaatgacaagatttt
tcgatcaacattttcttcaaggtgaactNNNNNNNNNNNNNNNNNNNNNN
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accactggtgtaaaaatgaacgttatagcataagtagaaaaaaagctcaa
tttttgcaatagcaaatttaaccgctaaaaattgcgaatttttcaaccaa
aaatacattctaatatagcgcttttgattctctgaaacaagcaaaaaaca
tttccataattatatttgactatcaaaagttacaggcattcttgtttcca
ctgccaattatatctggacagactttagttgaTGACTCGGACACTATGGA
AAGTTTTGATGAATTGTTTGAACTCATAAACAGAGATATTTGTGCGGATA
ATTAATAAcacgtcaaaaaatattcaaagccTTCACCTTCTTAATATTAC
CGAGTTtgtgtatgtgtgtttttctgcgacggagccAGTAAGATGTTCTG
ATTTGTCTTGATCCtaaccagctgaggacgacggtaaatcagtgCTTTGG
GACCGTCCTCGAACCGCGGGTTATTCCTATAAATCACTTTAGTTATTCTA
CTGTCCTcgaaagtgcaaatacataaactcgctattttcagttttaagcc
taaaaatattcttttttctactgttttgtgattatttttgtgtaatttcc
taactaaagaaaaaaaaattcgtgtcGGCACGAATCCAAGGGTTAATTTG
GTGGTGTGTTCagaatttcattgaaattcGACACTTACTTACTCATTTTA
TCAAGTATCTCTTCGACTAAAGAAATCTCTAAAAGGGTCCTTAAAAAAAT
TGCGGTAATACACgctttcttataagaatatatACTATAACTATAACGTA
ACATAAAAAATTGGaagtataaagaaaaataataaagaaaaattatttca
tggttttttattgcaaaaaaaaaatactgatAAGGCTTTTTCCGGACACA
CTGTATAAACCTCAAAAGTTGTCGCGAGCCATAGTTccatttacatgttt
ttttattcattcataagaataaaatattaacaaaacttTGACATAATTTT
AAGGTTCTGCGGACTCAAACACACCTAATGTCTTaagaaaatacacaaaa
atgctcacaaagtgatgaaaataagaacatattattaaacagttaagaat
attttaagaatttgcaaaaaaagacgCAATTTCtttagcaagtttatgta
tttgcactttcgaggacggtagagtgacttaAGCGATTTGgcggaataac
ccgcagttctgacccgctaaatcgaggacagtaaaagcgctgatttaccg
tcgtcctcagctggtcaggatcaaGACAAATTAGAACCCTACTGTCTCCG
CTGCAGAAAAACAcatatacataaactcggtaatgttAAGAAGGTGAAAG
ATTTGAACATTTTTCGACGTGTTATTAATTATCCGCACAAATATCTCTGT
TTATAAGTTCAAACAATTCATCAAAACTTTCCATAGTGTCCGAGTCATCA
ACGAAAGGACATTCCACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNATTTATTTTCGGTTcgcagataagaaaataaactatgta
agaacataaggttacgatagcaaaaatattaacaaaacgttaaaataatt
ttaaggctttgcagactcaaaCACACCTAATGTCTTaagaaaatacacaa
aaatgctcacaaagtgatgaaaataagaacatattattaaacagttaaga
atattttaagaatttgcaaaaaaagacgCAATTTCtttagcaagtttatg
tatttgcactttcgaggacggtagagtgacttaAGCGATTTGgcggaata
acccgcagttctgacccgctaaatcgaggacagtaaaagcgctgatttac
cgtcgtcctcagctggtcaggatcaaGACAAATTAGAACCCTACTGTCTC
CGCTGCAGAAAAACAcatatacataaactcggtaatgttAAGAAGGTGAA
AGATTTGAACATTTTTCGACGTGTTATTAATTATCCGCACAAATATCTCT
GTTTATAAGTTCAAACAATTCATCAAAACTTTCCATAGTGTCCGAGTCAT
CAACGAAAGGACATTCCACATCTTTCATTTTATATATCTTTTGCTTTGGC
GTAAACAAATGCGGTTTATAATTGCAATTGAATTCAATAAAACGAACATG
CAAAATCTCTGGTGTAATTACAATGTTTTGAGAGGAATCTGAAAACCTGA
TGTGATTGGATTGATTCTCGATAAATGTTGCATAGTCAGCGAAACTTTTC
ACACGATTTCTTTCTGTATGGTTCAGAAACCTGGTCCCTtaccaaaaagt
ttgaaaagcaaCTAGACGGTACCTATACCAGACTTCTGAGAAGGGTTGAA
AATCTCTCTTGGCGTGACCATCCAACAAAACGCACCATATATGGTTCCCT
GAAACCAATCTCTCTCCTCCTTAAAGCCAAGCGCGTTCAATTTGCTGGTC
ATTGTTTCCGTGCCTCATCTGAGGTTATTTCCTCCCTATTGCTTTGGAAA
CCTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNATTTATTTTCGGTTcgcagataagaaaataaactatgtaagaa
cataaggttacgatagcaaaaatattaacaaaacgttaaaataattttaa
ggctttgcagactcaaaCACACCTAATGTCTTaagaaaatacacaaaaat
gctcacaaagtgatgaaaataagaacatattattaaacagttaagaatat
tttaagaatttgcaaaaaaagacgCAATTTCtttagcaagtttatgtatt
tgcactttcgaggacggtagagtgacttaAGCGATTTGgcggaataaccc
gcagttctgacccgctaaatcgaggacagtaaaagcgctgatttaccgtc
gtcctcagctggtcaggatcaaGACAAATTAGAACCCTACTGTCTCCGCT
GCAGAAAAACAcatatacataaactcggtaatgttAAGAAGGTGAAAGAT
TTGAACATTTTTCGACGTGTTATTAATTATCCGCACAAATATCTCTGTTT
ATAAGTTCAAACAATTCATCAAAACTTTCCATAGTGTCCGAGTCATCAAC
GAAAGGACATTCCACATCTTtcattttatacattttttccTTCGGCGTAA
ACAAATGCGGTTTATAATTGCAATCGAATTCAATAACACGAACATAGATA
ATTTCTGGTGCAATTACTTTGTTCTGACCGTAATCTGAAAACCTAATGTG
ATTGGATTGATTCTCGATAAATGTTGCATAGTTAGCGAAACTTTTCACAA
GATTTCTAGAATGAAATACTATCTCTAATGGTTCTTTGTTTAACCTTTTT
CGTCTCTCGTTGACGTTTTTTGTAACCCACATAGCCGGCGGCAGGTAGGC
ATCAGTTaaatgaaaagttttgatatgaATTTCCTCAATATCTTTCAAAC
AAGTCTCATTGAAGAGATGTTTAGACATTGGTAGCGATTGAGAAAACTGA
TATCTGTTATAATCAGGGTTCTTTATGAGATTGGTCAAATCTGCTAGATG
CTGATGAAGATACATTTTGGTTGTAAATCTATGGTAGTCTGTAAATAAGA
GTCTGTGTACTGGCATCCAGAATTCTGAAGGACATGATTCTTGATCACAA
AGAACAATAACATTCCAGCTATCATCTTGAAGTTTCTTAAGTGTGTTAGA
AAGGCTCATATCTTTAGACCACTTATGGTAAGTCGCAAAGAAAAATGTCT
GATCGAAAGAACCGTCATTACTTGACGTAAGTCCATCTTTATGTAATTTT
TCGAGGAAACTCAAAACCCTTTTCTCAATCGTCGAAAAGTAATCAGGACT
GGCTTCCACTGGGTCCGTCAACTGTCTCTCTACATGGTTGACCGTATTTT
CATCCCAACGTATAACACGATCTTCATTTGGTAAATATATATTTATTGTA
ATGCAAGGATGATTCTCTGCTATCTCTGGTAAATGATAGTTCAAAAACCC
ATCACGCATTGTCCTGATCATACCCTGCATAAAAATAGTGACATTTCTAT
TTTGAGTACAACTCAGTGTTCGAAAGTCTGTTGATTTGTTTAGAATGTCG
GTCCCAGTAAAGCAAAACACTTGAAAAGTTAATACGAGAAAACTAGTGAA
CATTTTTTAAGACAAATTTTCTCAACTAATCTTTCACTCTCTATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032642XLOC_032642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051505-exon-scaffold_202-1491911889:520182..520791TCONS_00051505-exon-scaffold_202-1491911889:520182..520791Clytia hemisphaericaexon
TCONS_00051505-exon-scaffold_202-1510915933:520182..520791TCONS_00051505-exon-scaffold_202-1510915933:520182..520791Clytia hemisphaericaexon
TCONS_00051505-exon-scaffold_202-1575043694:520182..520791TCONS_00051505-exon-scaffold_202-1575043694:520182..520791Clytia hemisphaericaexon
TCONS_00051505-exon-scaffold_202-1491911889:530474..530628TCONS_00051505-exon-scaffold_202-1491911889:530474..530628Clytia hemisphaericaexon
TCONS_00051505-exon-scaffold_202-1510915933:530474..530628TCONS_00051505-exon-scaffold_202-1510915933:530474..530628Clytia hemisphaericaexon
TCONS_00051505-exon-scaffold_202-1575043694:530474..530628TCONS_00051505-exon-scaffold_202-1575043694:530474..530628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:520182..530628 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46897	1.94926	0	0	0	0	0	0	0	0.247451	0	0	0	0	0	0.100211	0	0.456343	0	0	0	0	3.53548	4.38676	0.0451461	0	0.544427	2.53933	0.313561	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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