TCONS_00051516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051516
Unique NameTCONS_00051516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051516 ID=TCONS_00051516|Name=TCONS_00051516|organism=Clytia hemisphaerica|type=transcript|length=2271bp
TTTTTagtcaattaaataaaaactaagAACTTCAAGATGCCTCGTTACGA
TGAAGGAAGATCTGAAGGAAGATCTGTTCTTCCAACCAAAAGCATGATGG
GTGGAAGACTTTACGTTGGCAAACTTCCCAGAGACATCAGAGAGCGTGAT
GTAGAAAAAGAGTTTCGCAGATACGGACGTGTCAAGGATATTTCCATGAA
AGGAAACTACTGTTTTATcCAATACGAAAGCTCGAGGGATGCATCAGATG
CTGTCCACGATTTACACGGTCGCATGCTTTGGGGTGAAAGAATGTCAGTG
GAGCATGCACGAACACCGAAAGAGTTTGGATATAGAAGAGGTAGTGGTGG
TGGTGGAAGTCGATACCATGATAGAGGTTACAGAAGAGATTCATACAGAG
ACTCATACCACTCACGTAGAAGATCGCCTTTGCGCAGTGACTATCGAATT
CTGGTCAAGAACCTATCAACTAGATGTGATTTCCATGACTTGAAAGAAGT
CTTTGGAAAAGCTGGATCCGTATTGTTCGCAGACGCACACAAGAAGCGAG
TCGGAGAAGGTCTGGTCGAATTCGACTCCAGAAAGGATATGGAACgagct
ctcaaaaaattgaaCGGACTTGAAATTAATGGAAAACCAATTCAACTGGA
AATCGATGAAGTGAAACGCAGATCACGATCTCGTAGTCGTAGTCGCAACA
GAAGTCGTTCTCGATCACGATCAAGAACCAGATCCAGAAGTCGATCGCGC
AGTCGCTCAAGATCCCGCTCGCGTTCAAGATCACGTTCGCGCGGTCGCTC
ACACAGCCGATCAAAGAGTAGATCAAAGTCAAGATCCAAGTCTAGGTCGA
GATCGAAATCAAGATCTAAGTCTCGATCACCAAGGCGTTCTCGTTCACGC
TCGAAATCTCGTTCGGCCGAACGTAAATCGGCGGGCGGTGAAGAAAAGAA
GGAGGTGAAGAAAGAGCAAAGCGACGATGAGATGTTTGATGAAGCGGAAC
GATCTGTTAAACGAAATAAGGAGCGACGGAAGGAGAAGGGTGACGCATCG
GAGAGTGAGGGTGAAGGAGGCGAAAAAGCGAAGAAGTCTGAAGGTGGCGA
TGACGATGAAGAAATTGTGGAAGAAATTATTGAGGAAGAAGTCGAAGTTG
AAGAAGAAGTCGAGGAGAGTGAAGAAGAAGAACAGATTGTCCAAGAAATG
AGTGAAATCAAAGTTGGAGAAGAACAAACTAAAACAAGAAAGACAGGTAC
TGAAGgaAACAAGAAAAATACAGAAGACGCTAAAGAAGAAAACGGGCAAA
TGGAAGTTGACGAAAATGGAGATGAGCGCTCACAAGATGATGACGCGGCC
GCCAGTCCAGACGCCGAAGCCGATGGTAAACGCACACGCGGTCGAAAAGC
AGCCGCCTCGTCCGCGCGTAGCACGCGAAGAAGTTCGAGGCGAGCATCGA
AGCCAACGGAAGAGGAGGCGGATGAATGATGAGGAGAAGTACGCATGCGT
caatttatgttttttataatggaGAGTTTTCATATTGTTAACTTGATGCA
ATGAGAGAGTATTTTTAACGAAGATTTTAACTAAAACCGCAAACACCATC
AAACAATAAACATCGGTATTGGACTTATACAGTATTTTAAATCATACACG
CGATTTGGAATGTCGCTCAACAAAAATTACATGTAAATTTATTGGTTTTT
CATTGACCAACCTTTTAAaccaaaaaaaggtaaaattcaTGACCAGTTTT
TTAAACCAGGAagttaaaatagaatggaagaatatagattctcattttta
ttttcaaaaaaggactttaacaaaaatattattgagcaattttttttgcc
attcTAAAACCTCAGTGTGTaaatatgttttatttttgccttgTAGTTTT
AAACCTCTCTGACTTGAAATACGATGAATCTGGTACTGTTCTTCGAATAC
CATTGGTAATTTCGCTAGGAAGCTCTTCACTTTGACTTTGATTCAAAACC
CTGTTGTACTTTTTCCACCGTAAGACTGAGTAGAAAACTAAATTGAACCT
TAAGGTTACTTGATAGCAGAAATAAAAAATCCGCAAAAAAGGCCAATTTT
ATTACCAGGAAAATTATGTCTCACGGTATCCTTTTAGTACTATAAATAAG
GGATTTTTTTGTGTATTTGATATTAACAATGTCAACATCTTGtacatttt
aaaagattttctttttattccaataaaaaatgttttaatgacAGAAAAGA
AAATATCTGGGAATCAACAAG
Run BLAST on NCBI

transcript from alignment at scaffold_202:739681..749858+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051516 ID=TCONS_00051516|Name=TCONS_00051516|organism=Clytia hemisphaerica|type=transcript|length=10178bp|location=Sequence derived from alignment at scaffold_202:739681..749858+ (Clytia hemisphaerica)
TTTTTagtcaattaaataaaaactaagAACTTCAAGATGCCTCGTTACGA
TGAAGGAAGATCTGAAGGAAGATCTGTTCTTCCAACCAAAAGCATGATGG
GTGGAAGACTTTACGTTGGCAAACTTCCCAGAGACATCAGAGAGCGTGAT
GTAGAAAAAGAGTTTCGCAGATACGGACGTGTCAAGGATATTTCCATGAA
AGGAAACTACTGTTTTATcgtaagtttttgttttttctcaagTTTTCATA
GCCTTGCCAGTACGCCTACCCATTTCAATCATAGTTGTCAGAGGGAAGGG
TCAAGCCTTCCCTTCAATAAAGGTTGTAATCCTTATTNCCGCCTACCCAT
TTCAATCATAGTTATTAGAGGGAAGGGTCAAGCCTTCCCTTCAATAAAGG
TTGTAATCCTTATTGCAAAAAACTAACTTTGTTTGATCAGAcacaagaat
attttcagcagAATATGTAATATTTTAAGCATGTAATATTTTGGACATCT
ATCATTTTTTTCTAGCAATACGAAAGCTCGAGGGATGCATCAGATGCTGT
CCACGATTTACACGGTCGCATGCTTTGGGGTGAAAGGTGTATATATTTTT
CCTACTTTGTGCTAtaaatttaaacatttttaaatttggaCTTTTTTCAA
TGGATATCCTGGAATATCGTTGCTTATAATATGCAGGTTTTAGGTGGTCC
CTATTAAATGCacatttattgtttttaaatattttcaaaatcagcTTAAA
ACAATGTCTATTATGTGTTATAGAATGTCAGTGGAGCATGCACGAACACC
GAAAGAGTTTGGATATAGAAGAGGTAGTGGTGGTGGTGGAAGTCGATACC
ATGATAGAGGTTACAGAAGAGATTCATACAGGTTGGTAACCCCTTGTATT
GAATGAATGTAAGAAAAAAGTTGTATAGAAGGTTGTTTGATGTATTCCAA
TCAcatcaaatatttttacccAAAATCCAACTAGATGGTTTTAAGGTATT
AGTGTTttgcttttatattttttgtaaatgATGGGTGGCACAACAATCAG
AAGTTAGTTTATTGTAAAATAATTTGCaatttgcgaaatttaattcccgc
aaaaaaatcaaaagagctttcaatttgcaaaatttttaatttttttaaac
ttattaataaaaaatgttcaaatacTCTCCTTTTCTGAAGTTTTATAGCA
AGGGACTTTAGTAACAATCATTAAAGCAAATACTTCTACTCTCCACATTA
TAAggaaaattaggaaaattttttaatttatcctCACGACTCacgaaatt
caattcaattacaAACACCTTCGCAATCAAATGGCTTGACTTGGCTTGAA
ATTTCCTTTTGGCAAAAAATTCTGACATTTAAGTATACCGAATTTGAAAG
GATCCCTCTTTCATACTCCTGAACAGTCCcgaaatctcaaaattattaaa
atttcaaaataatgaagATGAAATTCATAAGCAACATGGGATATATATAT
GACCTGCTATGACATGGAATCGCCGAAACTCAGAAAACtaaaaggatatt
tttttccgcGAGGACGAGACTGATTTTCTTTAATTTGGCTGCAAAGCAAA
TCTTGCGTTGTAAAATTTACGTCATATGTACTGCAAAATATATTTCCTTG
GTGGAATTGTCTTTTATTGTATGGCCCTCTCTAATTGACACCGTAAACTT
TTATTCCTTCAGAGACTCATACCACTCACGTAGAAGATCGCCTTTGCGCA
GTGACTATCGAATTCTGGTCAAGAACCTATCAACTAGATGTGATTTCCAT
GTAAGTTACGATTTAGCTCCATCCTTTAGATTTGTCGCCGACCTCAAATT
TAGTGTCCATGATGGCTTACTTCATGTTTGAGGGCCTTTTACGAGTGCTA
ATCTCAATAAAGGTAAGAAAGACAGAAAGAATGTCAGTTCTATTAGACAC
TGATCTCAATGTTGAATCTTTTTCAAAGTATTGCGAATTTACACCCTTTC
tttctttattgaaagaaaattctCTCTACCAAATGGACCCTAtaattagc
aaaaataggttgatatttcaatatttgAGAGAAAGCAGTGTAGCCatcaa
tcgaaatttttttgtgTATTTCTTCTTTACAGCTCGTTTTGTCGTGATCA
GGGAGATTTTACGACTATTTCTCCCCGTATTTACGTAAATTTTACGAGCT
GTCTTACGTTACGTTATGTTGTGTCGCTCGGTCATTCGGTCCTGAAACTT
GGATTGCTATTCGTAACCATTGCCACGCGTAAATTCGTTACGAAAGAAAA
TGCTCGAAAACGGAATAAGCTATCGTCACTCGCAATCGCGTTATCCTTAT
GCTTTGTTTACGAGCAAGCGTACACTGACGTTATTTTCGCGTTATTTCCA
CGATACGTATTTACGAAATTTACaagttttcgaaattttacactGACGTA
CACAAGACGATAAAAAAGTCTAGATATTACGGCAACACTACACTTGGCTA
TGGAACAGGTAAGATATTGTTctggaaaatgggaaaaaaatctTTCGCCC
CGCTTTTTGTAGAGCTGGGTTAGTGCCCACTGAATACCCTTGTTGAATTC
TGGGCGTACGCTCTCCAGCTTTTTTCCCCTCGAGGATATTGATAAAAGAG
CAACtttaattttcatcaaatacattttgaaatagacaaattatcgtggc
ttggattgAACTCAGACGATGTTGAGCGAATTTGTTGTATTTACGGAGGA
CATTATCATTGGTAGTTATTGTCGGAGCAGACGAATTGATCAATTAATTC
GACATAATCGACCGTTCTTTTATCTGGTGAATGAGCTGCATTTGGACATG
TTTTTCACTTCAAGCCTTCGGTTCGATTGATCTTTCATCCCGACAGTTTT
GTTCACGATTGACAACTTATATAATCAATATATTCGGCGCGGAAGAAAGA
TTGATATGACAAGATGACGAAAAAGACGAGATGCTTGATTTTTGCATCCC
TTTTTAGTAGATGGTGCGATCGATCAAAACTATTATATGGAAAATCCGCA
GTCTTCGTAAACGGTAGTTCGCACATAATAACACTTGCAATGACTCGAAA
AGACTCGACGAACATCCATCGGTGACACTTTTTCATACACTTCAATTACA
AATCATTATGCATCTACTCGAGATGTTTTTTGTCATCTACAGGAAAGGAT
TGATACATTTGAAATGTAATTGTCATGTTGAACATTGCGCTGGTCTTCAG
TTTCAATCAATGTGCAATCAGCAACATACCATCACTAACCGGATAACGAC
ACAATCAACAATATTTGAACGagtttaaaagttttctcatATGGATATGA
GCTATATCCTCTCTTACCTTTATTCTCGCTTAAATTTTATTCCTATGTTC
TTTCTTTTCGTCTTAGGACTTGAAAGAAGTCTTTGGAAAAGCTGGATCCG
TATTGTTCGCAGACGCACACAAGAAGCGAGTCGGAGAAGGGTAAGGCTGA
TatcaaaattacatttcttcacTGTTCTTTGCTACCTAAACATTATCAGA
ACTCTTGAAAATGTTTAGTAATATTTAGTAGATCCACTGAGATGTTTTCA
CAAACTCGGCAGGCGTTTTTCAACAACGATTTTGAATCTGTTCTCAAATG
TTttggctaaaatattaaaaattaacTGATCTTGACTTCTCAGAAGCCTG
TTTCAAATAGAGTCGATATGAAATAATTGTATTTTCAGAAGGTCAAACCA
GAAGTCTCACCTTTTTGTTATAATGGTCAACTTCTCTGGACAGCTCAGGT
AGAAATGGCGAAagatgaaaattatgaaaaattctttaaacatTGACGTT
TGCACACTTTTCTTACAGTCTGGTCGAATTCGACTCCAGAAAGGATATGG
AACgagctctcaaaaaattgaaCGGACTTGAAATTAATGGAAAACCAATT
CAACTGGAAATCGTAAGTCTATTTTTACTCTCGTAAATTGTCCCCATGGA
ATAAATCTATTTAAGCTGGGagaaagtttatttttgacaAATGTAATGTA
ATGGCTTTTTAACCAGACATGAGAATAAAAGCTCAAACTTGTTGTTATAA
TCAACGAATTTTCTCTCGTATACTGTACATACAGTATCTCTCTTTTCATT
CAAATCTCATAATCGAATGcgatatatatatatacaccGACAAGTTTCGA
AAAAATTGCTTCGTGAATCTTTAAATCGTACGCTAGATTTTGTacaaaat
ttcttcaatttcttaaCATTTAGGATGAAGTGAAACGCAGATCACGATCT
CGTAGTCGTAGTCGCAACAGAAGTCGTTCTCGATCACGATCAAGAACCAG
ATCCAGAAGTCGATCGCGCAGTCGCTCAAGATCCCGCTCGCGTTCAAGAT
CACGTTCGCGCGGTCGCTCACACAGCCGATCAAAGAGTAGATCAAAGTCA
AGATCCAAGTCTAGGTCGAGATCGAAATCAAGATCTAAGNAGATCAAAGT
CAAGATCCAAATCTAGGTCGAGATCGAAATCAAGATCTAAGTCTCGATCA
CCAAGGTACTTTTATTCCTCACTCTGTAGGAAAATCTGGGCGCTAGTTCT
CATTCTGCTAGATAGTCATCGGATCCAACTGCTATTTTCTGCACAATCAA
ATGGCGACTTTCACTCCTCTCCGTTGGAAAATTGACACGTTCTTTTTAGA
GATCCTtaaaaatatgcgccgtatttttgacggcggattgaatctagcga
ttccCTTGTTTTCTAGTGatgtctttttcaaaatttaggtgtaaatttta
gtttcaatctgctGTGATTTGTGTAAAAACAAGGCGGACCGcgctaggcc
gcgcaactttggtaggatttggtaGGCTTCAATCCAActatagcccttcg
ggcttatacttcaatGGGTGGGTCACTAATACGCCTGTCAACCTTTACGT
TCAAAGCTGTATAGAAGGGGACTAGGTACGAGTTTACTAGGGTAGAATGG
ACGGTGTCAGATgtctgaagtcgttgcattgataAGCTCACAGATATAAG
TATGTAAATGTTAagaccggtctccacttgcgcgcgcttcgatcacacct
tttggcttcaatcctttttgcttggaaagaAGATTACGTCTTAAAATGTA
GCGTGCGCTCGAAAAAAAGAATACATTTTAACTTTTATCagccgttacgt
cagatcgcgccaatggagttgcttcatttttcttttgaccaatagcgtgg
aagctttgctcgaaaaagtgcgatcaaagcgcgcgcaagtggagaccggc
ctttagtcGAGCCTGGTAAAGGGCATCCAATCCAATCGTTACTTTAGAAT
TGATAGCTGTACGAAATATCGGTTGAAATATACTCCCTCTTTATTCTAGG
CGTTCTCGTTCACGCTCGAAATCTCGTTCGGCCGAACGTAAATCGGCGGG
CGGTGAAGAAAAGAAGGAGGTGAAGAAAGAGCAAAGCGACGATGAGATGT
TTGATGAAGCGGAACGATCTGTTAAACGAAATAAGGTATATTTCCTTCTC
CATTGNAAAAGAAGGAGGTGAAGAAAGAGCAAAGCGACGATGAGATGTTT
GATGAAGCGGAACGATCTGTTAAACGAAATAAGGTATATTTCCTTCTCCA
TTGTTGACTACATATCTTAAGTCCGACTCAAAATTTATTGAACACTTtac
tttttaaagaaatttctcAGCACCTATTTATGctatgtcaaaaaattttt
ccaatgtgGATTGGCTCAGTCGACATAGCAGTTGCACAGTGATACGTCCT
CCGTTTTTAGTTCGCCATCAAACTGAGGTGTAAGTCCTTGATAATgatat
tgttaaaaaaatatacaccGCTTATTTCCTACAAAATTGCTTGAATAATA
TTCCATCCTCCATCCACTACTGCTCCaagtagcgagcacctcaccaatTT
TTCATCTCGTTAATAGCATAGAAAAAGCGCGGATGACGTCTAATATAAGC
TACGTTAGAAGCTCCTTTTCATTACATTTCAGGAGCGACAGAAGTATTTA
CCTATAATATTTTAAACGCAAATAAAATTGTTATCGTTACATTTCAGGAG
CGACGGAAGGAGAAGGGTGACGCATCGGAGAGTGAGGGTGAAGGAGGCGA
AAAAGCGAAGAAGTCTGAAGGTGGCGATGACGATGAAGAAATTGTGGAAG
AAATTATTGAGGAAGAAGTCGAAGTTGAAGAAGAAGTCGAGGAGAGTGAA
GGTAAGAATAAGTTGTTCTTACGGTGTTCTTTTAAGTTGTTTCTAagctt
gtttttcttttgatattgttCTTGAAAGAAAACCAGGAGagtgaaattta
aaaagaatttgtgGAGTTCTTCTAAAATTAAAATGGCTTGAACTGTAGaa
gaaaagttaaagaaaagttAAAGTAAGAGGTTATAATTTAGGATaataaa
agttttcttttcgtaTTTGACTCTGGCTGTCTTCTTAGGTTGTTTTATAG
TTTTGAGTAGCAGTAAAAGAATTTGAGAGAATCACGATTCGGGGCTAGGG
GAGGTTATCTATGTTATACACTTCTTGTTAGACAAATCATATTTTAATTC
TACCTAAAAACCGAATAGGACTTTTCAAGGCCAACTAACCTTAGAACAGC
TTTATTATCAGAATTTGAGGTGAATTTTGTTCATAGTGTTTATCTTCAGA
ATAGGAAGAGAGAAtagtttcaaaatattttgatgttgcATGCATGTACG
TTTAGAAGAAGAACAGATTGTCCAAGAAATGAGTGAAATCAAAGTTGGAG
AAGAACAAACTAAAACAAGAAAGACAGGTACTGAAGGTAAGTAATAAGTG
ATCATATATAATACACCCGAATGGATTTATTTTATCATCAGCTGCTCTTA
TGTGCTCATGGTTTTCAGGTTGAAATGTTTTCTTAAGATTTTTTCTCACT
TCGCTANAAGAAAAGGTAAAGTAAGAGGTTATAATTtagaataataaaag
ttttcttttcgtaTTTGACTCTGGCTGTCTTCTTAGGTTGTTTTATAGTT
TTGAGTAGCAGTAAAAGAATTTGAGAGAATCACGATTCGGGGCTAGGGGA
GGTTATCTATATTATACACTTCTTGTTAGACAAATCATATTTTAATTCTA
CCTAAAAACCGAATAGTACTTTCCAAGGCCAACTAACCTTAGAACAGCTT
TATTATCAGAATTTGAGGTGAATTTTGTTCATAGTGTTTATCTTCAGAAT
AGGAAGAGAGAAtagtttcaaaatattttgatgttgcATGCATGTACGTT
TAGAAGAAGAACAGATTGTCCAAGAAATGAGTGAAATCAAAGTTGGAGAA
GAACAAACTAAAACAAGAAAGACAGGTACTGAAGGTAAGTAATAAGTGAT
CATATATAATACACCCGAATGGATTTATTTTATCATCAACTGCTCTTATG
TGCTCATGGTTTTCAGGTTGAAATGTTTTCTTAAGATTTTTTCTCACTTC
GCTACTTTGTTGCATTTAGGGGCCTGAAATCATAAACTTctttacaattt
tgaaaattccagcCTCGAAGTGCTATTAACTCTTTAGCCTCTCTTAAAAT
TAGTTCTTAAAACACAAGATTAGTGATATACGGAAATAAAAGTAATTTGA
GGACAGGAATAAGGTGTTCTTTGGttctaaagtaattttttaggatactg
tattacttcgaataaacgccccttcttttaaacgctcCCGTCGAATAAAg
gcccctcctaaaatccaaaCAATTTAATAACCCCCCGGGTCATTTCAtcc
gaagtaatacggtatataAGCTCAAACATGGACTGACGTCTGTATTTTGA
ACAATAGCCTGCACAAAATAAGATCTGCATGAAGGAAATAAAAACTTAAT
CTAGGAACGATAGTCAGGGTAGTTTTTCTCTATGGAACAAGGTAGTTTTT
ATTACGTTTNCGATAGTCAGGGTAGTTTGTCTCTATGAAACAAGGTAGTT
TTTATTACGTTTTTAGATTCGCGATGCATTATTCTGTAGATTGAAGTAAG
CGTTGTCAATTAAGTTTTTCCGAGGTGCTTTTTTTTGCATAGTTATACTA
ACTATTAGGTTATACTTTCTTTGCAGTCCTGTTTGTGTtacgtaaagttt
ttttctacGTGTTTTTTTAGGCAGggtcatggcgttctaaatttgtttaa
gggctctgaccatagtgaatttttaatatttgccacgtacaaaatataaa
tttctgctTGATGTAGTCCACAAAACTGGGGCATGttaaacattttctgt
tagacaaattATCCTTGTTTTTGAGTCTGAAAActtaagaatcgcaatga
aaaaatttgatgaagaagaaaatgaagaattttgcgaagaagagtatttc
aactttgaagagcttattttcggcgaagaaaaaatattttgaaatttttt
ttgcggtagatggtttatcttttaccgaactaaaaatagattttcggaaa
atttttctaaaagcttatttgtctcaaaatcttgaaaatattgctttttg
accagtttttcaacccaatttttcatagataaacagccataacttttacc
gaactaatttagaaaatttttccgaaaaatttaaaacagttcaattcttt
gcgaacagtttgaaaaaacttcgaaacaaaaaggttaattacccattaaa
acttagcactttttataaaagaaggtaatgcaacatattattaacgtctt
tttaaagttcatagcgtcatttttgtaactaaattcttaattactcttaa
gggatttgattaaaaagctatttatataggcaattctttgttaaaagtgt
taaagaacctaaaacataccTTTTATGTTCAAAcactaaaatctattttt
tgactatggtcagagcccttaagataCAAATAGCCTGAATGAAAATTTGT
CTAGCGAACGCTTTTccatgtttattttttattattttttttttacactt
tcatACTGAAACAGATTGTGAATTCTCCTTCGCCCAGCAGATCAAGGTTC
CGTCATCAAATGATAGTTTTTCCTATAAACATGCGTGTGATCCCTTTGGT
ACCCTTGAATTTCTTGATTATTCAATCATctgaattgttttcttttcttt
tttttctcaaaggaAACAAGAAAAATACAGAAGACGCTAAAGAAGAAAAC
GGGCAAATGGAAGTTGACGAAAATGGAGATGAGCGCTCACAAGATGATGA
CGCGGCCGCCAGTCCAGACGCCGAAGCCGATGGTAAACGCACACGCGGTC
GAAAAGCAGCCGCCTCGTCCGCGCGTAGCACGCGAAGAAGTTCGAGGCGA
GCATCGAAGCCAACGGAAGAGGAGGCGGATGAATGATGAGGAGAAGTACG
CATGCGTcaatttatgttttttataatggaGAGTTTTCATATTGTTAACT
TGATGCAATGAGAGAGTATTTTTAACGAAGATTTTAACTAAAACCGCAAA
CACCATCAAACAATAAACATCGGTATTGGACTTATACAGTATTTTAAATC
ATACACGCGATTTGGAATGTCGCTCAACAAAAATTACATGTAAATTTATT
GGTTTTTCATTGACCAACCTTTTAAaccaaaaaaaggtaaaattcaTGAC
CAGTTTTTTAAACCAGGAagttaaaatagaatggaagaatatagattctc
atttttattttcaaaaaaggactttaacaaaaatattattgagcaatttt
ttttgccattcTAAAACCTCAGTGTGTaaatatgttttatttttgccttg
TAGTTTTAAACCTCTCTGACTTGAAATACGATGAATCTGGTACTGTTCTT
CGAATACCATTGGTAATTTCGCTAGGAAGCTCTTCACTTTGACTTTGATT
CAAAACCCTGTTGTACTTTTTCCACCGTAAGACTGAGTAGAAAACTAAAT
TGAACCTTAAGGTTACTTGATAGCAGAAATAAAAAATCCGCAAAAAAGGC
CAATTTTATTACCAGGAAAATTATGTCTCACGGTATCCTTTTAGTACTAT
AAATAAGGGATTTTTTTGTGTATTTGATATTAACAATGTCAACATCTTGt
acattttaaaagattttctttttattccaataaaaaatgttttaatgacA
GAAAAGAAAATATCTGGGAATCAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032647XLOC_032647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051516-exon-scaffold_202-1491911889:739681..739899TCONS_00051516-exon-scaffold_202-1491911889:739681..739899Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:739681..739899TCONS_00051516-exon-scaffold_202-1510915933:739681..739899Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:739681..739899TCONS_00051516-exon-scaffold_202-1575043694:739681..739899Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:740196..740266TCONS_00051516-exon-scaffold_202-1491911889:740196..740266Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:740196..740266TCONS_00051516-exon-scaffold_202-1510915933:740196..740266Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:740196..740266TCONS_00051516-exon-scaffold_202-1575043694:740196..740266Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:740454..740561TCONS_00051516-exon-scaffold_202-1491911889:740454..740561Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:740454..740561TCONS_00051516-exon-scaffold_202-1510915933:740454..740561Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:740454..740561TCONS_00051516-exon-scaffold_202-1575043694:740454..740561Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:741393..741480TCONS_00051516-exon-scaffold_202-1491911889:741393..741480Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:741393..741480TCONS_00051516-exon-scaffold_202-1510915933:741393..741480Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:741393..741480TCONS_00051516-exon-scaffold_202-1575043694:741393..741480Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:743097..743170TCONS_00051516-exon-scaffold_202-1491911889:743097..743170Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:743097..743170TCONS_00051516-exon-scaffold_202-1510915933:743097..743170Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:743097..743170TCONS_00051516-exon-scaffold_202-1575043694:743097..743170Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:743549..743642TCONS_00051516-exon-scaffold_202-1491911889:743549..743642Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:743549..743642TCONS_00051516-exon-scaffold_202-1510915933:743549..743642Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:743549..743642TCONS_00051516-exon-scaffold_202-1575043694:743549..743642Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:743954..744144TCONS_00051516-exon-scaffold_202-1491911889:743954..744144Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:743954..744144TCONS_00051516-exon-scaffold_202-1510915933:743954..744144Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:743954..744144TCONS_00051516-exon-scaffold_202-1575043694:743954..744144Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:744197..744235TCONS_00051516-exon-scaffold_202-1491911889:744197..744235Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:744197..744235TCONS_00051516-exon-scaffold_202-1510915933:744197..744235Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:744197..744235TCONS_00051516-exon-scaffold_202-1575043694:744197..744235Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:745080..745215TCONS_00051516-exon-scaffold_202-1491911889:745080..745215Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:745080..745215TCONS_00051516-exon-scaffold_202-1510915933:745080..745215Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:745080..745215TCONS_00051516-exon-scaffold_202-1575043694:745080..745215Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:745778..745931TCONS_00051516-exon-scaffold_202-1491911889:745778..745931Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:745778..745931TCONS_00051516-exon-scaffold_202-1510915933:745778..745931Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:745778..745931TCONS_00051516-exon-scaffold_202-1575043694:745778..745931Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:746984..747064TCONS_00051516-exon-scaffold_202-1491911889:746984..747064Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:746984..747064TCONS_00051516-exon-scaffold_202-1510915933:746984..747064Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:746984..747064TCONS_00051516-exon-scaffold_202-1575043694:746984..747064Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1491911889:748843..749858TCONS_00051516-exon-scaffold_202-1491911889:748843..749858Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1510915933:748843..749858TCONS_00051516-exon-scaffold_202-1510915933:748843..749858Clytia hemisphaericaexon
TCONS_00051516-exon-scaffold_202-1575043694:748843..749858TCONS_00051516-exon-scaffold_202-1575043694:748843..749858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:739681..749858 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.07926	6.05841	20.1699	24.7196	4.68843e-05	5.06131e-07	0.299107	1.70588e-05	8.79988	14.7733	6.28469	8.78641	6.354	3.94038	6.18485	7.87437	6.90603	9.1034	0.452899	2.33547	7.95711	8.59425	6.82434	6.8718	2.44409e-08	1.22955e-05	1.87675	3.49767	6.19508	5.26583
Blast
[Close]
BLAST of TCONS_00051516 vs. Swiss-Prot (Human)
Match: SRSF6 (Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.634e-39
Identity = 80/181 (44.20%), Postives = 121/181 (66.85%), Query Frame = 1 
Query:  106 RLYVGKLPRDIRERDVEKEFRRYGRVKDISMKGNYCFIQYESSRDASDAVHDLHGRMLWGERMSVEHARTPKEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLRSDYRILVKNLSTRCDFHDLKEVFGKAGSVLFADAHKKRVGEGLVEFDSRKDMERALKKLNGLEINGKPIQL 648
            R+Y+G+L  ++RE+D+++ F  YGR+ ++ +K  Y F+++E SRDA DAV++L+G+ L GER+ VEHAR P+         G        G    S R S   +   P+R++YR++V+NLS+RC + DLK+   +AG V +ADAHK+R  EG++EF S  DM+RAL KL+G EING+ I+L
Sbjct:    3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRR-----DRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
The following BLAST results are available for this feature:
BLAST of TCONS_00051516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF61.634e-3944.20Serine/arginine-rich splicing factor 6 OS=Homo sap... [more]
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