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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051544 ID=TCONS_00051544|Name=TCONS_00051544|organism=Clytia hemisphaerica|type=transcript|length=383bp
ACTTCGTCCCACAACAAAGTCTGCAACCACAACCAAAAATCCTCTAACAA
CGAGACTTCCTCCCACGACAAAGTCCACTACCACAATACATAATCCTTCA
ACAACGAGATTTTCTTCCACGATAAAGCCTACAACCACAACCAAAAATCC
TCCAACAGCGAGACTTGCTCCCACGACAAAACATGCTAACACAACAATAG
ACTTTAGTCCACCTAATCATGAAGGAACAAATAATTATGATCCAATAGCA
GCTGCACTGCTTTTTATTGTCGCCATTACCTTGGTTGTTATGCTGGTGTA
TGCTTTCCGTAAGCGATTGAGAAGGGCGTACCGAAAATTTAGATATGGAA
CACCAGCTACAGGTGGTGGATATAAGATGTTGC Run BLAST on NCBI protein sequence of TCONS_00051544-protein >TCONS_00051544-protein ID=TCONS_00051544-protein|Name=TCONS_00051544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
LRPTTKSATTTKNPLTTRLPPTTKSTTTIHNPSTTRFSSTIKPTTTTKNP
PTARLAPTTKHANTTIDFSPPNHEGTNNYDPIAAALLFIVAITLVVMLVY
AFRKRLRRAYRKFRYGTPATGGGYKML Run BLAST on NCBI transcript from alignment at scaffold_202:994089..996892+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051544 ID=TCONS_00051544|Name=TCONS_00051544|organism=Clytia hemisphaerica|type=transcript|length=2804bp|location=Sequence derived from alignment at scaffold_202:994089..996892+ (Clytia hemisphaerica)
ACTTCGTCCCACAACAAAGTCTGCAACCACAACCAAAAATCCTCTAACAA
CGAGACTTCCTCCCACGACAAAGTCCACTACCACAATACATAATCCTTCA
ACAACGAGATTTTCTTCCACGATAAAGCCTACAACCACAACCAAAAATCC
TCCAACAGCGAGACTTGCTCCCACGACAAAACATGCTAACACAACAATAG
ACTTTAGTCCACCTAATCATGAAGGAACAAATAATTATGATCCAATAGCA
GCTGCACTGCTTTTTATTGTCGCCATTACCTTGGTTGTTATGCTGGTGTA
TGGTAAGTTcaccttataaaaaaagcgtggtAGTACGAAAAAGAACCatt
aaagccattgaccttttacatgtatgttgattcagcagattgaaataagT
AGAATCTATTtcaatgaataaagaaaaatgtggagcaagattttttttct
tccttttatttacaaatttgaaaggactcttttattaaaattttgctgac
atcagtttcagacgagtcgggtgtatatgACACCGTATAATCCCTTTAAC
CCtggtaaaaatgaaaagatcttatcaagaaactttgcttattctttttc
agtttcttactacGAACGTGCcaagatctttcaagatctttaacGATCTG
ATAAGACTCTTTTATAAGTTTTGAATAGGATTCTTGTCCCTTACAGTGAT
TCAAGATCTTGGCGGAATCttaagtaaaagtaagtcggAGGttacccgaa
ggctcctctttcgatagctatctacctgaaggtaggggaggggttgctcc
acttacccttaatccttctcttaattgctgagcatcaagcagagaggcat
aaagtaccattttggaaatccttggtatgacccggctgggggttgaaccc
tcaaccttgtgcaccgtagacggatgctctaccacAGCACTACGGTCGCT
GACGAAATCTTACTACTATCCCCGTTCACTTATTGAATAAGGGCCGAAAG
CTTCGCTCGAGTGACAGCATTCAACTGATGACCTCGTGAATACTTCCCAT
TAATCAACTATTTCATTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTGACCAAAAACTGCTTCGTAAATACTATCCTTAGAGATTGCTCTCCT
TGAGTCTAAAGACtccttcttatgaaaaacaatcatAACCCGAAATTTAC
GTGCTTTTAAGATTCTTAAACCCAAACTTGATAAGAACCACTAAGAATCC
TAAAGCTTCTTTGCACATAATAGTTAgttaagatttggaaagtctcttta
taaaaactttacaagttacgcaaagaatcttaaaatatttaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTTAAAATATTTAATGGCTTAAGATTTCGTAAGATTC
TACTTAAGAACTTAATAAGAAATAATAATTATCTTACTATAAATACGCGG
GAAGAATCTTGACAATTTTTAGCGATTTCTTtacaagatctttaaagatc
tttttgctggaagatcttacaaagattttataagattcttacttgttaaa
gatcttgaaagatcttcaacgatcttttcagatcttatcaagaattttta
ccagggaAGCTTCTTCAACCTTTCCCGAGCAACTACGTTTggaatgacag
attgaatcttTGCGCTTTGTTGTCACATGGCATAGATCTCGAAATTTTgc
gatattattttttttcttaaaacccGGTGTTTCCCTTTGGCTAGAAAGCT
CGTATCGGTTCACTGAGACAGGGTATTTCTAAATATAGCATTTTTCATTT
ATAGCTTTCCGTAAGCGATTGAGAAGGGCGTACCGAAAATTTAGATATGG
AACACCAGCTACAGGTAAACTTTTATACCTTACTTGaacaatttttggtt
tttcttttttttgtcgaaaatcGCATTAATTCGTGAAAATTAATCAAAGC
TAAATTTAATGAGTTACAGATCAACGCCTAGTTAGCATAGGATAAAGGGC
TGACTGGTATCGTTAATGACAATGGTACTGtttacaccccttctcacagt
cccactgggacccctttccactggaaaaattggccaaaatatcgtcccca
gtggaaaattatactctgatttttgtccccgttgaaaataatcagataag
caaatcctcactgcaaaataatgtgctattttttctatcccactgaattt
ttgCTAGAAAATAATGTAATTGAAATCCCTAGTATTAGCAATAAAAAACA
TGGTAATATCAATCACcatttggtccgttattttacccccactggctgat
aaaatcccaccgggtctgtgagaagggggtgtctttcTCATTTAAAGCAA
CAGATTTTCCTTTCTCCTTTAGTCTTTTTGCACAGATTGAGAACGTTAAG
TATTAGAACGCGTTCAGATTCATATTCTTGAAATAGCGCTTTTCTTGCTG
TCGTACATGAAGATCAGTAcgaaaaacaaactttatataattgttacatt
atTGCCCCTAAAATTAATCTTTAATACTTTTAGGTGGTGGATATAAGATG
TTGC Coding sequence (CDS) from alignment at scaffold_202:994089..996892+ >TCONS_00051544 ID=TCONS_00051544|Name=TCONS_00051544|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_202:994089..996892+ (Clytia hemisphaerica)
CTTCGTCCCACAACAAAGTCTGCAACCACAACCAAAAATCCTCTAACAAC
GAGACTTCCTCCCACGACAAAGTCCACTACCACAATACATAATCCTTCAA
CAACGAGATTTTCTTCCACGATAAAGCCTACAACCACAACCAAAAATCCT
CCAACAGCGAGACTTGCTCCCACGACAAAACATGCTAACACAACAATAGA
CTTTAGTCCACCTAATCATGAAGGAACAAATAATTATGATCCAATAGCAG
CTGCACTGCTTTTTATTGTCGCCATTACCTTGGTTGTTATGCTGGTGTAT
GCTTTCCGTAAGCGATTGAGAAGGGCGTACCGAAAATTTAGATATGGAAC
ACCAGCTACAGGTGGTGGATATAAGATGTTGCTTCGTCCCACAACAAAGT
CTGCAACCACAACCAAAAATCCTCTAACAACGAGACTTCCTCCCACGACA
AAGTCCACTACCACAATACATAATCCTTCAACAACGAGATTTTCTTCCAC
GATAAAGCCTACAACCACAACCAAAAATCCTCCAACAGCGAGACTTGCTC
CCACGACAAAACATGCTAACACAACAATAGACTTTAGTCCACCTAATCAT
GAAGGAACAAATAATTATGATCCAATAGCAGCTGCACTGCTTTTTATTGT
CGCCATTACCTTGGTTGTTATGCTGGTGTATGCTTTCCGTAAGCGATTGA
GAAGGGCGTACCGAAAATTTAGATATGGAACACCAGCTACAGGTGGTGGA
TATAAGATGTTGCTTCGTCCCACAACAAAGTCTGCAACCACAACCAAAAA
TCCTCTAACAACGAGACTTCCTCCCACGACAAAGTCCACTACCACAATAC
ATAATCCTTCAACAACGAGATTTTCTTCCACGATAAAGCCTACAACCACA
ACCAAAAATCCTCCAACAGCGAGACTTGCTCCCACGACAAAACATGCTAA
CACAACAATAGACTTTAGTCCACCTAATCATGAAGGAACAAATAATTATG
ATCCAATAGCAGCTGCACTGCTTTTTATTGTCGCCATTACCTTGGTTGTT
ATGCTGGTGTATGCTTTCCGTAAGCGATTGAGAAGGGCGTACCGAAAATT
TAGATATGGAACACCAGCTACAGGTGGTGGATATAAGATGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051544-exon-scaffold_202-1491911889:994089..994390 | TCONS_00051544-exon-scaffold_202-1491911889:994089..994390 | Clytia hemisphaerica | exon |
| TCONS_00051544-exon-scaffold_202-1510915933:994089..994390 | TCONS_00051544-exon-scaffold_202-1510915933:994089..994390 | Clytia hemisphaerica | exon |
| TCONS_00051544-exon-scaffold_202-1575043694:994089..994390 | TCONS_00051544-exon-scaffold_202-1575043694:994089..994390 | Clytia hemisphaerica | exon |
| TCONS_00051544-exon-scaffold_202-1491911889:996143..996202 | TCONS_00051544-exon-scaffold_202-1491911889:996143..996202 | Clytia hemisphaerica | exon |
| TCONS_00051544-exon-scaffold_202-1510915933:996143..996202 | TCONS_00051544-exon-scaffold_202-1510915933:996143..996202 | Clytia hemisphaerica | exon |
| TCONS_00051544-exon-scaffold_202-1575043694:996143..996202 | TCONS_00051544-exon-scaffold_202-1575043694:996143..996202 | Clytia hemisphaerica | exon |
| TCONS_00051544-exon-scaffold_202-1491911889:996872..996892 | TCONS_00051544-exon-scaffold_202-1491911889:996872..996892 | Clytia hemisphaerica | exon |
| TCONS_00051544-exon-scaffold_202-1510915933:996872..996892 | TCONS_00051544-exon-scaffold_202-1510915933:996872..996892 | Clytia hemisphaerica | exon |
| TCONS_00051544-exon-scaffold_202-1575043694:996872..996892 | TCONS_00051544-exon-scaffold_202-1575043694:996872..996892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:994089..996892 + |
Blast
The following BLAST results are available for this feature:
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