TCONS_00051665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051665
Unique NameTCONS_00051665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051665 ID=TCONS_00051665|Name=TCONS_00051665|organism=Clytia hemisphaerica|type=transcript|length=791bp
TTTAGACAAAACAGAAAATCTACACATTGACAAGAACAAGATCATTATGT
TTCGTAAAGGCTGTACCAACACATACTTGAGGCCAGTTTCTTATATTTTC
CTTTTCGTATCTCTGGCTATCACAATGGTTTCGTTTTGTACAAGTAGCTG
GTATAGTAAGATCAATGAGAAAGgaatcaaagttttcaaaggGATTTGGA
ATGTTTGTGAAGGCAAACAAGACTGGCCAGCATACTGTCATTTCTTACCT
GAACCACCGACGCCTGACAATCCGCATGACGATCCCTTCTTTGATATATC
ATCAGAGGAGCTGACAGGCGTGAGGGTGTTGATCTCAATGGCAATCTTAT
TTATGGTGGGCGCACTTGGTTATCCGCCCTTCTTCAAGCAAATGTCAACA
GGAATTCTGAAGATTGGTTTGATGTCAGTTCTTTCAGGAATTGCAGgttC
TTGTTTGTTCACAGCCATGTTGATTATGACACACCAAATGAACAGTATGG
ATCCAATACCAAACTTTGGATATTCTTACATCATGGGATGGGTATCAACA
GGAATGTGTTTCGTAACTGCTTGTTTGATTTATATCGCTTCCAAAGATAA
TGTTTACGTGGAAGGACTGTATTAAGTGAAGTTTGAAACCCTTAAACAAT
CGAAACAAAGCTGTCCTTTGGGGGCGCTTCCATCAGAGAGTTTACATCAC
GTGTATTACGAACCGAGACTCATGGACTACAAACTATCAACTCTTCCAGA
AGACAAAAGCTAACATTGTAGGCATCGGTGCCTGATACAAC
Run BLAST on NCBI

transcript from alignment at scaffold_202:1214919..1221956-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051665 ID=TCONS_00051665|Name=TCONS_00051665|organism=Clytia hemisphaerica|type=transcript|length=7038bp|location=Sequence derived from alignment at scaffold_202:1214919..1221956- (Clytia hemisphaerica)
TTTAGACAAAACAGAAAATCTACACATTGACAAGAACAAGATCATTATGT
TTCGTAAAGGCTGTACCAACACATACTTGAGGCCAGTTTCTTATATTTTC
CTTTTCGTATCTCTGGCTATCACAATGGTTTCGTTTTGTACAAGTAGCTG
GTATAGTAAGATCAATGAGAAAGGAATCAAAGTTTTCAAAGGGATTTGGA
ATGTTTGTGAAGGCAAACAAGACTGGCCAGCATACTGTCATTTCTTACCT
GAACCACCGACGCCTGACAATCCGCATGACGATCCCTTCTTTGATATATC
ATCAGGTAAGTTACGATCAAACCCTCGTCCCGCCGTGTATCCTAAGGCAT
TTTTACAAACATCCCCTTTTCACAGACCCGGTGAGATTTCTTCAGCTAGT
GGGGGTAAAAAAAGCGGAGCAAAACTCAATGGGGGGATTGATATTCCCAT
TTTGCTTATGACTGGGAATTTGAATTCCATTGTTTTTGAGCAAGAAAATT
CAGTGGCAATGGAATAAAATAGCACAATAATTTGCAGCGGGGACAAAAAT
TAGAGTAAAATATTCCACCGGGGAGGATATCGGACGAGCCAATGGAGTTA
TGAGAAGGGGGTGTTTTTAACGTTTCCTGTAGAGACCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAGCTTAGAATTTCTTTTGATACATTTTATAAAAGA
AATCAAAAGACTTTAACGACCAATTACCGACACATTCAACTCCTGTTTTT
CTTTATACCTCTATGAGAGACCAAAGAATATGATTTCGCACTATTTTCGT
AAGCAGGCAAAGCCCTTGTATCGGTGCAGGGAACGGGTTTAATTGCAGCC
TAAATTGCTTTCACTTTGAATTATGGCATGGAATCTCTATCATTTTCAAT
GTTATTGATAGTATTGAAAGTCTAAACAAAACATCTAAATTAAAAAAGTT
TATACCACACATTGGCTGACTAAAATATTTAAGAAATTTAAGCAAATCAT
AAAAAAGTAGAAATACCCAAGAACTTAGCTGGTACTAAATGCCTAAGCAA
GGTTTATTCATCGTCCAAAGCATCCGAATAACATATAAAACGCTCAAACA
AGTACTCTTTCCAGTTATCTTGAATATCCTTGACTTTTTCTCTATTTTAG
AGGAGCTGACAGGCGTGAGGGTGTTGATCTCAATGGCAATCTTATTTATG
GTGGGCGCACTTGGTTATCCGCCCTTCTTCAAGCAAATGTCAACAGGAAT
TCTGAAGATTGGTTTGATGTCAGTTCTTTCAGGAATTGCAGGTTAATATA
ATGTTTTTAATTCTGAAGTGATTGGGAAAGTACCATAAAAGTGGATTAAT
TTTGGCGGGGGATTAATTTGTCGATAGATCAATTTCATAAAATTTGGCGT
GGATTGTGGATTTAGTTTGGCGAATTGCAAATTTTGANATTTAATTTGGC
GATTGGCCAAAATACGAATTTTGGCGGGGGATTAATTTGTCGATAGATCA
ATTTCATAAAATTTGGCGTGGATTGTGGATTTAGTTTGGCGAATTGCAAA
TTTTGAGACGTTAAAATGGATGAAAATTACTATACAATATACTGTAAAGT
TATTGTTTTTGCATAATATTCTTTTTGTTAAATTTGGTGAATGGTGGGTC
AAATTAAATCCCCGCCAAAAATTAACCCACTTAAGGTGACGAGAGAAAGA
GAAACTAGTATCATGTCCCTGTCCCTCGTGTGTTTTTTTATGATCCTGAT
AGTGCCCGTGAAAGAAAGCACGATGGTTCCACGTCAATCTAAGAGAAGTG
TGTTTGGCTCTGGCGTACGAGATAGGAGGAATATACTAGGGAAAAATGTT
TTTGGCACAATTTTAGAGATTTAATGTTAGGACAAAATCAAAACCTAAAA
CATGTTGACCTATTGATTTCGGGATAAAATTATTATATAAAATAATTCAG
CCCTGACTCAATGTAACCAAAAAGGGATCATTAGCTCCTCAAAGAATTTG
TGTTATTCACAAAGTAGTGTTTTATTTGGAAACATACCGGGCGTTTCTCA
CTAATTTTCAATTTAAACAAATAAAATTAGTGAGAAACATCCGGACTATT
TTCAGTGCCTCCGTATAAAACATTACGTTATAAATATCATGAACTGTCCC
TTCAAAAGACACAAAAACATCTTAAAACGCAAACCTCACTATAAAACTAC
TTTTTTTTTATTTCAGGTTCTTGTTTGTTCACAGCCATGTTGATTATGAC
TCACCAAATGAACAGTATGGATCCAATCCCAAACTTTGGATATTCTTACA
TCATGGGATGGGTATCAACAGGAATGTGTTTCGTAACTGCTTGTTTGATT
TATATCGCTTCCAAAGATAATGTTTACGTGGAAGGACTGTATTAAGTGAA
GTTTGAAAACCTTTAACAATCAATACGAAGCTGTCCTTTAGGGGTGGTTC
CATCATAGAGTTTACATCACGAGTATTACGAATCGAGACTCATGGACTAC
AAACTATCAACTCTTCCAGAAGACAAAAGCTAACATTGTAGGCATCGGTG
CCTGATACAATANGGGGGCGCTTCCATCATAGAGTTTACATCACGAGTAT
TACGAACCGAGACGTTTTTTGGACTACAAATCATAAGCTATTCCAGAAGA
CAAAAGCTAACATTGTAGGCATCGGTGCCTGATACAATGAGTGAAAATAG
AAAGTGGTTGAAACTTCCAATAATGTTAATGTTGAACTCCATTGACTGGG
AATGTTAAGAGAAACCATCTTTTCAAAAACAATATTATGTCGAGAAAAAG
TGTTGCGATGGGAGAATCGGGTGTCATAATGCAGAATGATCAAAATGCCT
CTTCAAATAGTATTCAGTATGTTAGAGGGACTGTATGTTTTGAACATTAA
GATGAGGTTGATCAGCTGCCCGAAGAACGAATATCGAAAAATGAATTTGG
AATGGAGCTACAATCCAGAGAAAGATATACACAATTCTCCGGATCCGTGG
ATCCGTAGTAACGAACACTATATACAAACAACTTACTTATTAATGAGAGA
TGAATTACTTCCATACGATCAACTAATGTTTTAGATATAACAACATTCGG
ATTGAATGGATACGTTGTAAAAAAAATTGCCAAAAACTGATCATAAGTAC
TTCGATGGGATAAATTTTTGCAGGGATTAAATTTCGCGGATTTCGGATTT
TGGTGTTATCCTTAAAAATAAGTCCAGAAAGAATTGTAAAGGGCTTCATC
TGCGAAAATAAGTCCCCGCAAAATGTTCAAATTTCACGGATAGGTAATCT
ACAAATGATATTTACAACGAATAAGGAGATCGCGTCGACCAGTTCATAGA
AAACATTACCTCTGTACCTTTGATTTGAAAACTGTGTTGTTTTTCTGATT
TCGTAGAAAAGTTAAAATGTAAAATCTACAAACCTGTCGGTACTATAGTC
TGACAACTGGTTTCAAATTAGAAAGATTCTCTAAAGATAATAGTTTCTCG
TGAGCTTTTAACGAGTCAATGATTTCATGTAAATTTGATCCACCATTTAA
TAAGTCCTCTACTCCGTGCAATGTTAGACCGATACGATGATCAGTGATTC
GGTCTTGTGGATAATTATAAGTTCGTATACGTTCTGATCTTAGGGCGGAC
CCAATTTGGATACGCCGTGCGTCACTACGTTCTTTCATTGCACGTGTCCG
CTCCTCGTCGTAAAGTTTGGCGCTCAGCACTTGTAATGCCTTCTGCCGAT
TATCGTATAATATCAAAGCGCTTAGACTCACTGATTGCCAGACTACGCTA
TAATAACTTGGACCTATTTATATTAGTAGTCTCATGGTCTCAAAGTCTTA
CATCAGAATCATCGATCTAAATTATGAGCTACCCCCGAGACAAACTTTCG
CGATTTTCATAAATTCTGGCCATCTTCGCGAAATTAGAATACTGATAACG
GTTCAGGTCGTTTAGTTATCTTACCATAATTTGTGATCTGCCATCTTGCA
TTGAAACTGTCATTCCTGTTGGTAAATGCGTCACCCGTACCGCACTATCG
GTCGTATTGACATGTTGACCGCCGGCACCAGACGATTTAAAGGTATCTAT
TTTNGGTCGTATTGACGTGTTGACCGCCGGCACCAGACGATTTAAAGGTA
TCTATTTTGACGTCTTTCATGTCGAGAACGAAGCCAACGTTTTCAGGTTG
CGGAAGTACGGCAACGGAAATAGTTGACGTGTGTACGCGGCCTTGTGATT
CAGTAACGGGGATACGTTGAACTCGATGGACACCTATTTCATGCTAGGAA
GAACAAATAGATAAATTGATTCGGTCAAGAATTAACAGACTACTCACTGA
CCTTGTGGGAATAAAAAATCAATAAGCAAATGCCAAATACAAAGCAATTA
TTTTCTTTCTGGCATAGTAAACTTTCCAGTGTATTCAGCTTAGCTTTGTC
AAAATGCACCAATATAACTTCCAGGCGGAAGTTATAGATTTCCATGAGGA
CACGAATAGATGTCACTTAAGGAAAACAGTTTCACGAAAAAGGCGATAAA
TCTTTTTCCTGGGACACTACTAACCAATGAACGATATATAAGAAGCTGTT
TGCTGATCGTACATAAGCAATGTAAAATATTAACTTGATTCATAAAAAAT
TGAAGTTTATTCGTTTCAATTCTTATTTAACATTTTTAACGACGAATCGT
TCCAAATCGATGGCCCAAATCGATGGTCGACATTGTGTTACTTTTGTTCT
AGATTGTAAAATTGAGTAATCGACTGACGTTAGAAAGTGCACTGTTTGTT
TTTTCGATGCGTTTCAGACCTCATTTTGAATATCGTTAACCTGGCTTTAA
CACCTACCTTCATGAAGGCGAATACAGAATTTCCATTGATGGTTGCAGAG
GCTTCTTTCAGTCCTCCTTCAGCATTGACACTTTCGGATACGATGTCAAA
TGTCCATCTATTGCTGGATGAGAACTTCTTATACATGTTGAAAATCTAAG
ATAGAAATAAAATTATGATCAAAACGTTCCATTTTGAGGTAATTTTTGTT
ATTAATAGACTGATATATACCCTAGACCAAGTTTCTCAATCCCGGCAAAG
CAAAATCTTTGATCGGAGTTTTTTGAAAAGTGGTACCCTAATGGCGGCAC
TACTTAATAATAGTGTAAATGCACCGAGAGCGCTAATATATTTTCCCTCG
AAAACTTTTGATGCTGTAGCGCCGTTAGACGTTAATTTTTGACACTGCAA
TGGCTTATTTACGGGTACCAATCACTGACCTTTATATAACCCTGGACCAA
GCAATATCTGCCATCTTTGATTGGAGTTTTTTTGGAATTGGTACCCGAGG
AGAAGCCATTGCAATGTTAAAAATTAACGTCTAACGCCGCTACATCACCA
AAAGAATTGGAGGAAAAGTAGACCTAGCGCTCTCGATGCATCGAGTAGTG
CCGCCATTAGGGTACCAATTTTCAAAAAACTCCGATCAAAGATTTTGCTT
GGCTGGGATTGAGAAGCTTGGTCCAGGGTATATAAAGGTCAGCGGAGTAC
TCCTATTGCGGTCGATGTTTACGAATAAGGGCCGATCGGTAAGAGGTTTT
TGATGACTTATATCGAACTGTGTCCTTAAAGTCTATCCAAGGAATCGAAA
ATCTTATATAGACACTACTTTTCTTTTGAAAATAGACCTTTTGTAGGTGG
CGCTGTCATGTTGAATGATCAAAAACTCAAGCCTGTATCACAATAGTAGT
AACACCCGAAAGGATAATTAGAAAACACGTGTACTAAATCCCCGCCAAAA
ATTAACCCAGTTAAGGTGACGAGAGAAAGAGAAACTAGTATCATGTCCCT
GTCCCTCGTGTGTTTTTTATGATCCTGATAGTGCCCGTGAAAGAAAGCAC
GATGGTTCCACGTCAGTCTAAGAATAGTGTGTTTGGCTCTGGCGTACGAG
ATAGGGGGAATATACTAGGGAAAAATGTTTTTGGCACAATTTTAAAGATT
TAATGTTAGGACAAAATCAAAACCTAAAACATGTTGGCCTATTGATTTCG
GGATAAAATTACTACATAAAATAATTTAGCCCTGACTCAATGTAACCAAA
AAGGGATCATTAGCTCCTCAAAGAATTTGTGTTATTCACAAAGTAGTGTT
TTATATGGAAGCATACCGGGTGTTTCTCACTAATTTTCAATTTAAACAAA
TAAAATTAGTGAGAAACATCCGGGCTATTTTCAGTGCCTCCGTATAAAAC
ATTACGTTATAAATATCATGAATTGTCTCTTCAAAAGACACAAAAACATC
TTAAAACGCAAACCTCACTATAAAACTACTTTTTTTATTTCAGGTTCTTG
TTTGTTCACAGCCATGTTGATTATGACACACCAAATGAACAGTATGGATC
CAATACCAAACTTTGGATATTCTTACATCATGGGATGGGTATCAACAGGA
ATGTGTTTCGTAACTGCTTGTTTGATTTATATCGCTTCCAAAGATAATGT
TTACGTGGAAGGACTGTATTAAGTGAAGTTTGAAACCCTTAAACAATCGA
AACAAAGCTGTCCTTTGGGGGCGCTTCCATCAGAGAGTTTACATCACGTG
TATTACGAACCGAGACTCATGGACTACAAACTATCAACTCTTCCAGAAGA
CAAAAGCTAACATTGTAGGCATCGGTGCCTGATACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032702XLOC_032702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051665-exon-scaffold_202-1575043694:1221652..1221956TCONS_00051665-exon-scaffold_202-1575043694:1221652..1221956Clytia hemisphaericaexon
TCONS_00051665-exon-scaffold_202-1575043694:1220316..1220456TCONS_00051665-exon-scaffold_202-1575043694:1220316..1220456Clytia hemisphaericaexon
TCONS_00051665-exon-scaffold_202-1575043694:1214919..1215263TCONS_00051665-exon-scaffold_202-1575043694:1214919..1215263Clytia hemisphaericaexon
TCONS_00051665-exon-scaffold_202-1510915933:1221652..1221956TCONS_00051665-exon-scaffold_202-1510915933:1221652..1221956Clytia hemisphaericaexon
TCONS_00051665-exon-scaffold_202-1510915933:1220316..1220456TCONS_00051665-exon-scaffold_202-1510915933:1220316..1220456Clytia hemisphaericaexon
TCONS_00051665-exon-scaffold_202-1510915933:1214919..1215263TCONS_00051665-exon-scaffold_202-1510915933:1214919..1215263Clytia hemisphaericaexon
TCONS_00051665-exon-scaffold_202-1491911889:1221652..1221956TCONS_00051665-exon-scaffold_202-1491911889:1221652..1221956Clytia hemisphaericaexon
TCONS_00051665-exon-scaffold_202-1491911889:1220316..1220456TCONS_00051665-exon-scaffold_202-1491911889:1220316..1220456Clytia hemisphaericaexon
TCONS_00051665-exon-scaffold_202-1491911889:1214919..1215263TCONS_00051665-exon-scaffold_202-1491911889:1214919..1215263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1214919..1221956 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	3.77015	3.77799	0.714298	1.23614	0	1.40803	0.872213	0.515728	0.159258	0.0494358	0.677984	0.455213	3.50786	2.46436	1.49001	0.152143	0	0.827265	0	0.790923	0	0.870385	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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