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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051683 ID=TCONS_00051683|Name=TCONS_00051683|organism=Clytia hemisphaerica|type=transcript|length=1674bp
CCCAAAGAGTTCCTCCATGTAACcaccaggcaagaaaaagttttGTCTGG
TATCTTCATTTCCTCTTTCTATGTCTAGATTGTCCAGTTCTTTTTCGACC
TCATCGTGATGAAGAACTGGCATTGGTGGTTGATGGTTAGTGGTTGGGGG
TTTCTTTCAAGATGCTCATGATTGTATTGATATCCTTTGCTTGTTGCTCC
ATCACCCCACGCATTCTAACCAACTTCAAAGAAAGTTCATCAATCTTCTC
acatgtatttttttttatctttgctGTTCTGAATGAAACGACCACTACTT
CTTGACGAAACAACATAATCTGTTGATTCCGGTGTGAAAGACATACGTGT
GAAACTGCTTCGTGTGGTGTTGAAGCGTTCATTGAATAAACTGGAGTGTT
GGCAGAAAATGGAACAGTGGCAAAACCAGACAAAGTAACAGTGGCAAAAG
AAGACAAAGGAACATTGGTGGAACCAGATAACAAAACATTGGAGGAACCA
GACGACAGAACATTGGAGGAAAGGTCCTCAAATTACCATCAAATAGCTTG
CCTTTAACAACCTTGGAAAATTGGGCGTCGGCTTCCTTGGATAAGTTGTG
TTTCAGAACCACTGCATCATAAATAAAGCCATTTTcactcttcttttttt
tccacATTGATGATGTCACGTTAATAAGTAATAAGTAGTGTCACGCCACT
TCTATAATAGTTTGGTAAATTACATAGAACTGCAGCGCTGCAAAGTTCTG
TATCGTCAATGAACGATGAGGAGGTGAAACCATCTAGGCACCGCCAGTTC
CATTAATGTCTTTTTACTCATTGTGAGTAATTTTCGCATCAGACTTTAAG
GTTTTTCCATTTCGTTTCAATGTCTTTAGTAGTCCTATTGGCAACGCCGG
GGGCATTAAATTTCCAAGTTATGTCCTCACAGAGAGCTTGTTTTGCTGCA
TTAGTTATTGAAGGCGAGAATACCCTTTCCTCCTATCGTGTCCTGGCTAG
CCTCGTACTCCTCCAAGATAATTCTGATCTCATCAGCAATAAACTTTTCA
TCTGGAAGTTCACCAGAGTCTTGATTTTCGTCTGGGTCAGGTACTTCGTC
CACGATATGCACGTCATCGACTCTTTTATCCTGTTCACGAGGAACAATGG
GCTTAAACTAGGCGAACATCACCTCCACTTTGTCTGGCGAGTCAAACATT
TAGATAGGACTAATTAAATAAAGTTCTCACCTTGTTAGAGTAGCAACTAC
CGTTGGAAACACTGAAAGTAACAAAGGTAGTAAATCTTTTAAACTAACAA
AAAATCCATCCAGTTTTCTTCCACCCAATACTAAAATAcccttctttttc
attttgatatcGCTTACGTCTACGTGCTTGTTTTCCCCCTCTCCGATATC
ATCTAAAACTCGACCAAAAGTCAATCGTTTGTTCCATGCGACGGCGTCAA
GTTGACCGTTTTCAATCTTGGGTGGATAGGTTGATCGTAACtccattttg
taaaattttctccGCCTCTCCAATTATACTAAGTTCGCTTTCCGAAATAA
TAATTTAAGAGCTGACGTTTTGACTTGGAATTTCAGGTGTTATTAATTTA
ATGGTCTTTGTATGCGCATTCAATTTTATCCCAATTCTTGTTTCGATGGG
TCCCAGGAACACAAAATCAGGGCG Run BLAST on NCBI transcript from alignment at scaffold_202:95576..97249 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051683 ID=TCONS_00051683|Name=TCONS_00051683|organism=Clytia hemisphaerica|type=transcript|length=1674bp|location=Sequence derived from alignment at scaffold_202:95576..97249 (Clytia hemisphaerica)
CGCCCTGATTTTGTGTTCCTGGGACCCATCGAAACAAGAATTGGGATAAA
ATTGAATGCGCATACAAAGACCATTAAATTAATAACACCTGAAATTCCAA
GTCAAAACGTCAGCTCTTAAATTATTATTTCGGAAAGCGAACTTAGTATA
ATTGGAGAGGCggagaaaattttacaaaatggaGTTACGATCAACCTATC
CACCCAAGATTGAAAACGGTCAACTTGACGCCGTCGCATGGAACAAACGA
TTGACTTTTGGTCGAGTTTTAGATGATATCGGAGAGGGGGAAAACAAGCA
CGTAGACGTAAGCgatatcaaaatgaaaaagaagggTATTTTAGTATTGG
GTGGAAGAAAACTGGATGGATTTTTTGTTAGTTTAAAAGATTTACTACCT
TTGTTACTTTCAGTGTTTCCAACGGTAGTTGCTACTCTAACAAGGTGAGA
ACTTTATTTAATTAGTCCTATCTAAATGTTTGACTCGCCAGACAAAGTGG
AGGTGATGTTCGCCTAGTTTAAGCCCATTGTTCCTCGTGAACAGGATAAA
AGAGTCGATGACGTGCATATCGTGGACGAAGTACCTGACCCAGACGAAAA
TCAAGACTCTGGTGAACTTCCAGATGAAAAGTTTATTGCTGATGAGATCA
GAATTATCTTGGAGGAGTACGAGGCTAGCCAGGACACGATAGGAGGAAAG
GGTATTCTCGCCTTCAATAACTAATGCAGCAAAACAAGCTCTCTGTGAGG
ACATAACTTGGAAATTTAATGCCCCCGGCGTTGCCAATAGGACTACTAAA
GACATTGAAACGAAATGGAAAAACCTTAAAGTCTGATGCGAAAATTACTC
ACAATGAGTAAAAAGACATTAATGGAACTGGCGGTGCCTAGATGGTTTCA
CCTCCTCATCGTTCATTGACGATACAGAACTTTGCAGCGCTGCAGTTCTA
TGTAATTTACCAAACTATTATAGAAGTGGCGTGACACTACTTATTACTTA
TTAACGTGACATCATCAATgtggaaaaaaaagaagagtgAAAATGGCTTT
ATTTATGATGCAGTGGTTCTGAAACACAACTTATCCAAGGAAGCCGACGC
CCAATTTTCCAAGGTTGTTAAAGGCAAGCTATTTGATGGTAATTTGAGGA
CCTTTCCTCCAATGTTCTGTCGTCTGGTTCCTCCAATGTTTTGTTATCTG
GTTCCACCAATGTTCCTTTGTCTTCTTTTGCCACTGTTACTTTGTCTGGT
TTTGCCACTGTTCCATTTTCTGCCAACACTCCAGTTTATTCAATGAACGC
TTCAACACCACACGAAGCAGTTTCACACGTATGTCTTTCACACCGGAATC
AACAGATTATGTTGTTTCGTCAAGAAGTAGTGGTCGTTTCATTCAGAACa
gcaaagataaaaaaaaatacatgtGAGAAGATTGATGAACTTTCTTTGAA
GTTGGTTAGAATGCGTGGGGTGATGGAGCAACAAGCAAAGGATATCAATA
CAATCATGAGCATCTTGAAAGAAACCCCCAACCACTAACCATCAACCACC
AATGCCAGTTCTTCATCACGATGAGGTCGAAAAAGAACTGGACAATCTAG
ACATAGAAAGAGGAAATGAAGATACCAGACaaaactttttcttgcctggt
gGTTACATGGAGGAACTCTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051683-exon-scaffold_202-1491911889:95576..97249 | TCONS_00051683-exon-scaffold_202-1491911889:95576..97249 | Clytia hemisphaerica | exon |
| TCONS_00051683-exon-scaffold_202-1510915933:95576..97249 | TCONS_00051683-exon-scaffold_202-1510915933:95576..97249 | Clytia hemisphaerica | exon |
| TCONS_00051683-exon-scaffold_202-1575043694:95576..97249 | TCONS_00051683-exon-scaffold_202-1575043694:95576..97249 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:95576..97249 . |
Blast
The following BLAST results are available for this feature:
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