TCONS_00051689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051689
Unique NameTCONS_00051689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051689 ID=TCONS_00051689|Name=TCONS_00051689|organism=Clytia hemisphaerica|type=transcript|length=570bp
taaagatatAATCATACCGTTACTAAGAATTAGAGAAAGTAGATTTTgat
caaaaagaataaaagtgaTTATAAACGACCGTAAGCCCTTATTATCCCAA
CAAACTTTTGTATCATGTCTCGAaaccacggtcaactaaaaagCTTTTCG
CTGACGATCAAATAGAGAGATTGATATCTCAGAAATAATCAGAAATCTGT
TTTATTTTGACTTGTTGTTTAGTGTCATGAAATTGTATCATGcttgagaa
aattatttatCACTGATGAGAATTTTTTCATTGGAGTGCTGACGGTTTGA
GTCAGAAACAATGCATGTTTCAGTTGTCTTAAAAGAATCGAAACTGTGAT
TAACTGGACTGACTCCTTACTTTGGCTTTTAGTACATTTTCGGTTGTAAA
AGCATTTTGTCAATGAATTTACATTCGTTACTTTACTAGCCGATAATTTA
TGTCACGCATGACTGTTTGAGAAATAATTTAACTTTTGGCTTCTAAGGAT
GAAAACATGAAACTAGCCTGAGTTTCTTGTTATGTTGTCCTCGTGATGAA
CGGGGTCTACTGTAGTTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_202:214462..215031

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051689 ID=TCONS_00051689|Name=TCONS_00051689|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at scaffold_202:214462..215031 (Clytia hemisphaerica)
CAAAACTACAGTAGACCCCGTTCATCACGAGGACAACATAACAAGAAACT
CAGGCTAGTTTCATGTTTTCATCCTTAGAAGCCAAAAGTTAAATTATTTC
TCAAACAGTCATGCGTGACATAAATTATCGGCTAGTAAAGTAACGAATGT
AAATTCATTGACAAAATGCTTTTACAACCGAAAATGTACTAAAAGCCAAA
GTAAGGAGTCAGTCCAGTTAATCACAGTTTCGATTCTTTTAAGACAACTG
AAACATGCATTGTTTCTGACTCAAACCGTCAGCACTCCAATGAAAAAATT
CTCATCAGTGataaataattttctcaagCATGATACAATTTCATGACACT
AAACAACAAGTCAAAATAAAACAGATTTCTGATTATTTCTGAGATATCAA
TCTCTCTATTTGATCGTCAGCGAAAAGctttttagttgaccgtggttTCG
AGACATGATACAAAAGTTTGTTGGGATAATAAGGGCTTACGGTCGTTTAT
AAtcacttttattctttttgatcAAAATCTACTTTCTCTAATTCTTAGTA
ACGGTATGATTatatcttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032720XLOC_032720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051689-exon-scaffold_202-1491911889:214462..215031TCONS_00051689-exon-scaffold_202-1491911889:214462..215031Clytia hemisphaericaexon
TCONS_00051689-exon-scaffold_202-1510915933:214462..215031TCONS_00051689-exon-scaffold_202-1510915933:214462..215031Clytia hemisphaericaexon
TCONS_00051689-exon-scaffold_202-1575043694:214462..215031TCONS_00051689-exon-scaffold_202-1575043694:214462..215031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:214462..215031 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0982763	0	0	0	0.132531	0.104728	0	0	0	0.307741	0	0.130903	1.37257	0.81453	0.334827	0.17966	0.0737756	0.226853	0.835759	0.983882	0.0950191	0	0	0	0	0	0.539025	0.287631	0.545395	0.444537
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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