TCONS_00051717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051717
Unique NameTCONS_00051717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051717 ID=TCONS_00051717|Name=TCONS_00051717|organism=Clytia hemisphaerica|type=transcript|length=820bp
TTGGTTGCCTTTTTTGAAGATTGGTGTGATGTAGCTTGATTTCAGTAGAT
GGGGAGTTTGACTTTTGTCTAGAATATTTCTCCAGATAAGACAAAGAGGA
GTTGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TAGAATGGGAGAGAATTGAAAAGCTTAGGTCCTTCTTCAGATAGTGAGCC
TCTCCAAATGTTTTTGTGTTTAGAATTTACTTCTTTAAGGTGGCATTTTC
GTCCGAGTCTCTGGTTTTCGTAGCAGGTGATACCCCCTTTGTTCTCAGAG
tggttgaaattttgagaaTATTTCTCTAAGATATACCAAGTATAGatgat
ttgatatctttctctACGTCTTTCCAGACTGTatagttttagagttttaa
ggNGAAACCATCAGGTCCAGGGGCAGAGTTTGAAGATAGGGTGTTGATTT
CGTTGATAAAATTAGCTTCTGTGAGGTCTATATCACATAGTTGAGAAGTG
TTGTTGTCATTTTCATTCAGGTCGTGTCTCTCCAATGGTTGAGTAAAGAC
AGAACTGTATTGGTTCTGAAGTATGTTAGCCATACGTTTACTGTCATTTG
TAAGTTCATTTGTTGACGGATCTATTAAGGGTCCAACCTTGGGTTTATGC
TTTGAAAACTTCTTTGCATAGGCATAGAAATATTTACGAttagatttaat
ttttgaagTAGCATCAAGTTCTTGCTTTTGTCTTTCATTTATGTGTGACT
GTTGAAGCTTGAGTTCAATATCGATAAGTTTCTCTGCGGTTTTGTTCGTT
Cgatgcttttttttttaatt
Run BLAST on NCBI

transcript from alignment at scaffold_202:1232312..1233131

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051717 ID=TCONS_00051717|Name=TCONS_00051717|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at scaffold_202:1232312..1233131 (Clytia hemisphaerica)
aattaaaaaaaaaagcatcGAACGAACAAAACCGCAGAGAAACTTATCGA
TATTGAACTCAAGCTTCAACAGTCACACATAAATGAAAGACAAAAGCAAG
AACTTGATGCTActtcaaaaattaaatctaaTCGTAAATATTTCTATGCC
TATGCAAAGAAGTTTTCAAAGCATAAACCCAAGGTTGGACCCTTAATAGA
TCCGTCAACAAATGAACTTACAAATGACAGTAAACGTATGGCTAACATAC
TTCAGAACCAATACAGTTCTGTCTTTACTCAACCATTGGAGAGACACGAC
CTGAATGAAAATGACAACAACACTTCTCAACTATGTGATATAGACCTCAC
AGAAGCTAATTTTATCAACGAAATCAACACCCTATCTTCAAACTCTGCCC
CTGGACCTGATGGTTTCNccttaaaactctaaaactatACAGTCTGGAAA
GACGTagagaaagatatcaaatcatCTATACTTGGTATATCTTAGAGAAA
TAttctcaaaatttcaaccaCTCTGAGAACAAAGGGGGTATCACCTGCTA
CGAAAACCAGAGACTCGGACGAAAATGCCACCTTAAAGAAGTAAATTCTA
AACACAAAAACATTTGGAGAGGCTCACTATCTGAAGAAGGACCTAAGCTT
TTCAATTCTCTCCCATTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTGCAACTCCTCTTTGTCTTATCTGGAGAAATATTCT
AGACAAAAGTCAAACTCCCCATCTACTGAAATCAAGCTACATCACACCAA
TCTTCAAAAAAGGCAACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032748XLOC_032748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051717-exon-scaffold_202-1491911889:1232312..1233131TCONS_00051717-exon-scaffold_202-1491911889:1232312..1233131Clytia hemisphaericaexon
TCONS_00051717-exon-scaffold_202-1510915933:1232312..1233131TCONS_00051717-exon-scaffold_202-1510915933:1232312..1233131Clytia hemisphaericaexon
TCONS_00051717-exon-scaffold_202-1575043694:1232312..1233131TCONS_00051717-exon-scaffold_202-1575043694:1232312..1233131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1232312..1233131 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.50516	2.53387	5.29075	6.09446	2.69297	2.35437	3.0795	2.17939	1.13132	1.51226	2.73898	2.06318	1.51352	2.3981	0.842483	0.752621	0.923513	0.850651	0.729414	0.967201	2.44198	1.61092	0.380278	0.896981	2.60688	3.75105	1.6175	3.01729	1.45656	1.38986
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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