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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051740 ID=TCONS_00051740|Name=TCONS_00051740|organism=Clytia hemisphaerica|type=transcript|length=3197bp
GATTGATATTATGCTAATTTAAAACTTTGGGAAGAGCTTTTTTGGTTGAT
AATTTTATtcgatttcttttcttttcagtaTTTAAATAAGAAGATGAGAA
ATCATTTAGTAATAAAGATTGGAAGCAATTCCACATTGTTTTATTGGTAT
GATGTTCAAACACTTCGCCAATTGAAAGAAAACATCGAAAAAAGATATAC
TATTCCTCCTGAATGTCAAACAGTTTGGAGTAACGGTATGAGAGTCACCG
ATGAATTATTTCGAGATCTATATGACAACCGCTTTGAACGAGATATCCAT
TTGGAAGTTGAAATCACTGACGAATCTTCGTATGAAAACATCGTTCAATC
TAGAAGAAAATTCGcttctcaaaaatcagaaattcgaaaaataaaattct
tcaaTCTAAGTAAATGGGAGATCTTCAAATTTACGTTCAAAAATCTTGAT
ACGAGATCGACAGTAATGGATGTGAAGCGTCATATTCATAGTAAGAAACG
CTGGCAGCCTACGGACGAGTTGCATATCTTGCATAAGAACTGTATCATTT
TGAGTGATGAGCAACTCCTTGTTGATCTTTTCCTGGATGATATTTGTAAG
GAATCGCTTTCTTTTCGATTGTTAGTTCAAACAAGATATGTTTTTGACGC
AGAGGGAAATTATGTTCAACCTGATAATTCTTTTACCGAAATCTTACCAA
ATATTGAAATTTCCGTTCCTGGGATAGACGATGTCGTTGAGTATCCATTG
AAAGAGATTGCTTCTTTCAGTGTAGATGATATGAAGACATACGTTAGACA
TTTATATGGAACGCCTTGTGAGGAAATAGAATTGATTTTAGAAGGAAGCT
CGCGAGTGCCTGTTGGATACCTTCCTATTGCTTGGACAGAAAATCCTGAC
TTGACCCCACAACAAATCAAGTTGCTCATTTATCATACTCCGAATCTTGA
ATATCAACACGTTTACAAGAGGAATGATATTCAGATGATGCAACCAATCG
AGATTACATGCTTCAACAACAGTTTCGAGAGTTTATTTTATTCTTACAAA
GGTGAAAGTGGATCATCCATCGAAGAGTTCATTCAAGAGTCCCTTCAGAT
TCCAAAGAATAAGATTCTTCTGTATTTCGACAATAAATTGACTTTCGATT
TCGAACTACAAACGAGGATCCGACTTGGTGATATCGAACCTCCGCTGGTC
GTTCGATTTGCTATTCAAATTGATGAGGTCGAAGACGAGAAATTACTTGA
GACGGTTACAAGGCATAATCTGAGTTGCGTCAAATCTGTTATTATTAAGC
ATCCATATGATGAAAATATCGCGTTTTGCCAATTTTCGATATCGAAAGTG
GTAGGGAATTCTCAGTATCAAGCATTGTGCGCCCTGGTGCGATCGCAACA
CGAGGATCTCAAGTCTGCCTCCATCGAGTTTCATCACCAGGGTGAACGAA
TCtctgaaaatttggaaaactaTTTTGTGAATGATGAGGGTGGGATCAAC
GAAAGTATTACGTTGTTCCTAATCAGTAAACCCTCACTCGATAAAAATGT
TCAACGTTTTTGTCATCAGTATGGTATCAAGTTTTTAAAGTCGGTGAACA
TTAACTTTCTGACAGGTCAGTTTTGCATTGATGTTCTAACGCAAACTGAT
TCAATGAAGACGATAGAAGAGTTGAAAGTCAAAATTTACCAATTGAAAAA
CATTCTACCTCATTTACAAATGCTCCATTGTAAAGAATCGAACATCGCTG
AGATTACAGATTCTATGAAACTTGATTCGTTATCAAATAATCAATGTGAA
TCGATCACATTTGATCTTATAGTCAAACCAGCACAAAATATGGAAATTAT
TTTCACTTGTCCTTTTTACCGAAACGTTAAAGAAGCATTACCAGTGTTCA
AAGAAACAGATACCTTTGCGTATGTCAAGGAGCATTTTTCTAAATTGAGT
GGTATCCCTACCTGTCTCATTTTCCTTGGTTCTAGTTACATTATCCGGAA
CGAATACNCGTCAAATCTGTTATTATTAAGCATCCATATGATGAAAATAT
CGCGTTTTGCCAATTTTCGATATCGAAAGTGGTAGGGAATTCTCAGTATC
AAGCATTGTGCGCCCTGGTGCGATCGCAACACGAGGATCTCAAGTCTGCC
TCCATCGAGTTTCATCACCAGGGTGAACGAATCtctgaaaatttggaaaa
ctaTTTTGTGAATGATGAGGGTGGGATCAACGAAAGTATTACGTTGTTCC
TAATCAGTAAACCCTCACTCGATAAAAATGTTCAACGTTTTTGTCATCAG
TATGGTATCAAGTTTTTGAAGTCGGTGAACATTAACTTTCTGACAGGTCA
GTTTTGCATTGATGTTCTAACGCAAACTGATTCAATAAAGACGATAGAAG
AGTTGAAAGTCAAAATTTACCAATTGAAAAACATTCTACCTCATTTACAA
ATGCTCCATTGTAAAGAATCGAACATCGCTGAGATTACAGATTCTATGAA
ACTTGATTCGTTATCAAATAATCAATGTGAATCGATCACATTTGATCTTA
TAGTCAAACCAGCACAAAATATGGAAATTATTTTCACTTGTCCTTTTTAC
CGAAACGTTAAAGAAGCATTACCAGTGTTCAAAGAAACAGATACCTTTGC
GTATGTCAAGGAGCATTTTTCTAAATTGAGTGGTATCCCTACCTGTCTCA
TTTTCCTTGGTTCTAGTTACATTATCCGGAACGAATACTCAGATGCTGAA
CCAGTTTGGATGTGTAGTAAAAGGCGACCTGATAGAAAGGTTATAATATC
AAAGAAAGTGTTGTTGACCATCGAAAACCCGATGGAAAATACACAAGAAG
AACAGGAATTTGCGCTTTCAAGCGCTTCTTACGAAGACAACATAGAAGAA
TTACGTATAGAATTAAGTGATGCGTGGAACAGAAAACATAAAAACCCTGA
TGTGACGCTTTCTTGGCGCAAAGTtgatcatttttcttttgaaaccaAAC
TGAGTGAAATCAACGAAGAACGACTTGTGTTTTACGTCAGACCTAAAACT
TCAAGTTGTGCTATTTCTTGATGTATCACAGTATTTTATTACTTAGTAAt
aagagaagaaattctttttgacttcagcCTAAGAATTTCCATTTTCATTG
CTCACATTTCCCAAAATTTCGCGCTTTTTCGTCTCGCGAATCTTTCT Run BLAST on NCBI protein sequence of TCONS_00051740-protein >TCONS_00051740-protein ID=TCONS_00051740-protein|Name=TCONS_00051740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=663bp
MRNHLVIKIGSNSTLFYWYDVQTLRQLKENIEKRYTIPPECQTVWSNGMR
VTDELFRDLYDNRFERDIHLEVEITDESSYENIVQSRRKFASQKSEIRKI
KFFNLSKWEIFKFTFKNLDTRSTVMDVKRHIHSKKRWQPTDELHILHKNC
IILSDEQLLVDLFLDDICKESLSFRLLVQTRYVFDAEGNYVQPDNSFTEI
LPNIEISVPGIDDVVEYPLKEIASFSVDDMKTYVRHLYGTPCEEIELILE
GSSRVPVGYLPIAWTENPDLTPQQIKLLIYHTPNLEYQHVYKRNDIQMMQ
PIEITCFNNSFESLFYSYKGESGSSIEEFIQESLQIPKNKILLYFDNKLT
FDFELQTRIRLGDIEPPLVVRFAIQIDEVEDEKLLETVTRHNLSCVKSVI
IKHPYDENIAFCQFSISKVVGNSQYQALCALVRSQHEDLKSASIEFHHQG
ERISENLENYFVNDEGGINESITLFLISKPSLDKNVQRFCHQYGIKFLKS
VNINFLTGQFCIDVLTQTDSMKTIEELKVKIYQLKNILPHLQMLHCKESN
IAEITDSMKLDSLSNNQCESITFDLIVKPAQNMEIIFTCPFYRNVKEALP
VFKETDTFAYVKEHFSKLSGIPTCLIFLGSSYIIRNEYXSNLLLLSIHMM
KISRFANFRYRKW Run BLAST on NCBI transcript from alignment at scaffold_203:125092..128288 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051740 ID=TCONS_00051740|Name=TCONS_00051740|organism=Clytia hemisphaerica|type=transcript|length=3197bp|location=Sequence derived from alignment at scaffold_203:125092..128288 (Clytia hemisphaerica)
AGAAAGATTCGCGAGACGAAAAAGCGCGAAATTTTGGGAAATGTGAGCAA
TGAAAATGGAAATTCTTAGgctgaagtcaaaaagaatttcttctcttaTT
ACTAAGTAATAAAATACTGTGATACATCAAGAAATAGCACAACTTGAAGT
TTTAGGTCTGACGTAAAACACAAGTCGTTCTTCGTTGATTTCACTCAGTT
tggtttcaaaagaaaaatgatcaACTTTGCGCCAAGAAAGCGTCACATCA
GGGTTTTTATGTTTTCTGTTCCACGCATCACTTAATTCTATACGTAATTC
TTCTATGTTGTCTTCGTAAGAAGCGCTTGAAAGCGCAAATTCCTGTTCTT
CTTGTGTATTTTCCATCGGGTTTTCGATGGTCAACAACACTTTCTTTGAT
ATTATAACCTTTCTATCAGGTCGCCTTTTACTACACATCCAAACTGGTTC
AGCATCTGAGTATTCGTTCCGGATAATGTAACTAGAACCAAGGAAAATGA
GACAGGTAGGGATACCACTCAATTTAGAAAAATGCTCCTTGACATACGCA
AAGGTATCTGTTTCTTTGAACACTGGTAATGCTTCTTTAACGTTTCGGTA
AAAAGGACAAGTGAAAATAATTTCCATATTTTGTGCTGGTTTGACTATAA
GATCAAATGTGATCGATTCACATTGATTATTTGATAACGAATCAAGTTTC
ATAGAATCTGTAATCTCAGCGATGTTCGATTCTTTACAATGGAGCATTTG
TAAATGAGGTAGAATGTTTTTCAATTGGTAAATTTTGACTTTCAACTCTT
CTATCGTCTTTATTGAATCAGTTTGCGTTAGAACATCAATGCAAAACTGA
CCTGTCAGAAAGTTAATGTTCACCGACTTCAAAAACTTGATACCATACTG
ATGACAAAAACGTTGAACATTTTTATCGAGTGAGGGTTTACTGATTAGGA
ACAACGTAATACTTTCGTTGATCCCACCCTCATCATTCACAAAAtagttt
tccaaattttcagaGATTCGTTCACCCTGGTGATGAAACTCGATGGAGGC
AGACTTGAGATCCTCGTGTTGCGATCGCACCAGGGCGCACAATGCTTGAT
ACTGAGAATTCCCTACCACTTTCGATATCGAAAATTGGCAAAACGCGATA
TTTTCATCATATGGATGCTTAATAATAACAGATTTGACGNGTATTCGTTC
CGGATAATGTAACTAGAACCAAGGAAAATGAGACAGGTAGGGATACCACT
CAATTTAGAAAAATGCTCCTTGACATACGCAAAGGTATCTGTTTCTTTGA
ACACTGGTAATGCTTCTTTAACGTTTCGGTAAAAAGGACAAGTGAAAATA
ATTTCCATATTTTGTGCTGGTTTGACTATAAGATCAAATGTGATCGATTC
ACATTGATTATTTGATAACGAATCAAGTTTCATAGAATCTGTAATCTCAG
CGATGTTCGATTCTTTACAATGGAGCATTTGTAAATGAGGTAGAATGTTT
TTCAATTGGTAAATTTTGACTTTCAACTCTTCTATCGTCTTCATTGAATC
AGTTTGCGTTAGAACATCAATGCAAAACTGACCTGTCAGAAAGTTAATGT
TCACCGACTTTAAAAACTTGATACCATACTGATGACAAAAACGTTGAACA
TTTTTATCGAGTGAGGGTTTACTGATTAGGAACAACGTAATACTTTCGTT
GATCCCACCCTCATCATTCACAAAAtagttttccaaattttcagaGATTC
GTTCACCCTGGTGATGAAACTCGATGGAGGCAGACTTGAGATCCTCGTGT
TGCGATCGCACCAGGGCGCACAATGCTTGATACTGAGAATTCCCTACCAC
TTTCGATATCGAAAATTGGCAAAACGCGATATTTTCATCATATGGATGCT
TAATAATAACAGATTTGACGCAACTCAGATTATGCCTTGTAACCGTCTCA
AGTAATTTCTCGTCTTCGACCTCATCAATTTGAATAGCAAATCGAACGAC
CAGCGGAGGTTCGATATCACCAAGTCGGATCCTCGTTTGTAGTTCGAAAT
CGAAAGTCAATTTATTGTCGAAATACAGAAGAATCTTATTCTTTGGAATC
TGAAGGGACTCTTGAATGAACTCTTCGATGGATGATCCACTTTCACCTTT
GTAAGAATAAAATAAACTCTCGAAACTGTTGTTGAAGCATGTAATCTCGA
TTGGTTGCATCATCTGAATATCATTCCTCTTGTAAACGTGTTGATATTCA
AGATTCGGAGTATGATAAATGAGCAACTTGATTTGTTGTGGGGTCAAGTC
AGGATTTTCTGTCCAAGCAATAGGAAGGTATCCAACAGGCACTCGCGAGC
TTCCTTCTAAAATCAATTCTATTTCCTCACAAGGCGTTCCATATAAATGT
CTAACGTATGTCTTCATATCATCTACACTGAAAGAAGCAATCTCTTTCAA
TGGATACTCAACGACATCGTCTATCCCAGGAACGGAAATTTCAATATTTG
GTAAGATTTCGGTAAAAGAATTATCAGGTTGAACATAATTTCCCTCTGCG
TCAAAAACATATCTTGTTTGAACTAACAATCGAAAAGAAAGCGATTCCTT
ACAAATATCATCCAGGAAAAGATCAACAAGGAGTTGCTCATCACTCAAAA
TGATACAGTTCTTATGCAAGATATGCAACTCGTCCGTAGGCTGCCAGCGT
TTCTTACTATGAATATGACGCTTCACATCCATTACTGTCGATCTCGTATC
AAGATTTTTGAACGTAAATTTGAAGATCTCCCATTTACTTAGAttgaaga
attttatttttcgaatttctgatttttgagaagCGAATTTTCTTCTAGAT
TGAACGATGTTTTCATACGAAGATTCGTCAGTGATTTCAACTTCCAAATG
GATATCTCGTTCAAAGCGGTTGTCATATAGATCTCGAAATAATTCATCGG
TGACTCTCATACCGTTACTCCAAACTGTTTGACATTCAGGAGGAATAGTA
TATCTTTTTTCGATGTTTTCTTTCAATTGGCGAAGTGTTTGAACATCATA
CCAATAAAACAATGTGGAATTGCTTCCAATCTTTATTACTAAATGATTTC
TCATCTTCTTATTTAAAtactgaaaagaaaagaaatcgaATAAAATTATC
AACCAAAAAAGCTCTTCCCAAAGTTTTAAATTAGCATAATATCAATC Coding sequence (CDS) from alignment at scaffold_203:125092..128288 >TCONS_00051740 ID=TCONS_00051740|Name=TCONS_00051740|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_203:125092..128288 (Clytia hemisphaerica)
CTACCACTTTCGATATCGAAAATTGGCAAAACGCGATATTTTCATCATAT
GGATGCTTAATAATAACAGATTTGACGNGTATTCGTTCCGGATAATGTAA
CTAGAACCAAGGAAAATGAGACAGGTAGGGATACCACTCAATTTAGAAAA
ATGCTCCTTGACATACGCAAAGGTATCTGTTTCTTTGAACACTGGTAATG
CTTCTTTAACGTTTCGGTAAAAAGGACAAGTGAAAATAATTTCCATATTT
TGTGCTGGTTTGACTATAAGATCAAATGTGATCGATTCACATTGATTATT
TGATAACGAATCAAGTTTCATAGAATCTGTAATCTCAGCGATGTTCGATT
CTTTACAATGGAGCATTTGTAAATGAGGTAGAATGTTTTTCAATTGGTAA
ATTTTGACTTTCAACTCTTCTATCGTCTTCATTGAATCAGTTTGCGTTAG
AACATCAATGCAAAACTGACCTGTCAGAAAGTTAATGTTCACCGACTTTA
AAAACTTGATACCATACTGATGACAAAAACGTTGAACATTTTTATCGAGT
GAGGGTTTACTGATTAGGAACAACGTAATACTTTCGTTGATCCCACCCTC
ATCATTCACAAAAtagttttccaaattttcagaGATTCGTTCACCCTGGT
GATGAAACTCGATGGAGGCAGACTTGAGATCCTCGTGTTGCGATCGCACC
AGGGCGCACAATGCTTGATACTGAGAATTCCCTACCACTTTCGATATCGA
AAATTGGCAAAACGCGATATTTTCATCATATGGATGCTTAATAATAACAG
ATTTGACGCAACTCAGATTATGCCTTGTAACCGTCTCAAGTAATTTCTCG
TCTTCGACCTCATCAATTTGAATAGCAAATCGAACGACCAGCGGAGGTTC
GATATCACCAAGTCGGATCCTCGTTTGTAGTTCGAAATCGAAAGTCAATT
TATTGTCGAAATACAGAAGAATCTTATTCTTTGGAATCTGAAGGGACTCT
TGAATGAACTCTTCGATGGATGATCCACTTTCACCTTTGTAAGAATAAAA
TAAACTCTCGAAACTGTTGTTGAAGCATGTAATCTCGATTGGTTGCATCA
TCTGAATATCATTCCTCTTGTAAACGTGTTGATATTCAAGATTCGGAGTA
TGATAAATGAGCAACTTGATTTGTTGTGGGGTCAAGTCAGGATTTTCTGT
CCAAGCAATAGGAAGGTATCCAACAGGCACTCGCGAGCTTCCTTCTAAAA
TCAATTCTATTTCCTCACAAGGCGTTCCATATAAATGTCTAACGTATGTC
TTCATATCATCTACACTGAAAGAAGCAATCTCTTTCAATGGATACTCAAC
GACATCGTCTATCCCAGGAACGGAAATTTCAATATTTGGTAAGATTTCGG
TAAAAGAATTATCAGGTTGAACATAATTTCCCTCTGCGTCAAAAACATAT
CTTGTTTGAACTAACAATCGAAAAGAAAGCGATTCCTTACAAATATCATC
CAGGAAAAGATCAACAAGGAGTTGCTCATCACTCAAAATGATACAGTTCT
TATGCAAGATATGCAACTCGTCCGTAGGCTGCCAGCGTTTCTTACTATGA
ATATGACGCTTCACATCCATTACTGTCGATCTCGTATCAAGATTTTTGAA
CGTAAATTTGAAGATCTCCCATTTACTTAGAttgaagaattttatttttc
gaatttctgatttttgagaagCGAATTTTCTTCTAGATTGAACGATGTTT
TCATACGAAGATTCGTCAGTGATTTCAACTTCCAAATGGATATCTCGTTC
AAAGCGGTTGTCATATAGATCTCGAAATAATTCATCGGTGACTCTCATAC
CGTTACTCCAAACTGTTTGACATTCAGGAGGAATAGTATATCTTTTTTCG
ATGTTTTCTTTCAATTGGCGAAGTGTTTGAACATCATACCAATAAAACAA
TGTGGAATTGCTTCCAATCTTTATTACTAAATGATTTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051740-exon-scaffold_203-1491911889:125092..128288 | TCONS_00051740-exon-scaffold_203-1491911889:125092..128288 | Clytia hemisphaerica | exon |
| TCONS_00051740-exon-scaffold_203-1510915933:125092..128288 | TCONS_00051740-exon-scaffold_203-1510915933:125092..128288 | Clytia hemisphaerica | exon |
| TCONS_00051740-exon-scaffold_203-1575043694:125092..128288 | TCONS_00051740-exon-scaffold_203-1575043694:125092..128288 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_203 | supercontig | scaffold_203:125092..128288 . |
Blast
The following BLAST results are available for this feature:
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