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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051822 ID=TCONS_00051822|Name=TCONS_00051822|organism=Clytia hemisphaerica|type=transcript|length=4064bpRun BLAST on NCBI protein sequence of TCONS_00051822-protein >TCONS_00051822-protein ID=TCONS_00051822-protein|Name=TCONS_00051822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=595bp MNNRKLAAVVIVALLVVVIALAVGLGIGLTKDDDDAEKGTQTNDAFFKYGRun BLAST on NCBI transcript from alignment at scaffold_205:280936..299054+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051822 ID=TCONS_00051822|Name=TCONS_00051822|organism=Clytia hemisphaerica|type=transcript|length=18119bp|location=Sequence derived from alignment at scaffold_205:280936..299054+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_205:280936..299054+ >TCONS_00051822 ID=TCONS_00051822|Name=TCONS_00051822|organism=Clytia hemisphaerica|type=CDS|length=17880bp|location=Sequence derived from alignment at scaffold_205:280936..299054+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051822 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2) HSP 1 Score: 357.451 bits (916), Expect = 1.950e-108 Identity = 219/547 (40.04%), Postives = 319/547 (58.32%), Query Frame = 3
Query: 333 FKYGAVATDAKQCSEIGRDMLKKGGHAVDGAIAALICTGVVNSHSTGIAGGGFMIIYDKSKNESIMLDYRETGPASLTTTSFDGNTDXXXXXXXXXXXXXELRGLKKAHEKYGKLTWAELIQPSIDLAEEGTVIGKHMGKYLKSSSSTGAKVKADPGLSELFIDADGNFKSIGSMVKNVKYAESLRQIQAD-YDALNAGNLSRIFLEDVNAKGGNMTAEDLKNYTV-LEKTPIKIKLTDQLTLHTSPLPGGGSVLSHILNMVKGMQLSPSDEEQISNKVLMYHKIVESFKFSYAMRPHLGDPNLVPDSEKDNFMKYSRDILSDINATNHRDKINLTSTQPNSYYDPYFVTTEDQGTTHVSVLDKDGNAVSATDTINYAFGAKFRSMKSGIIYNNELADYFTNSSYTKNEKNEVVDYPKPMVNAPLAGRRPLSSTCPSVITDQDNNVKMVVGGSGGTRITLSTAWVIIKKLWLNYTLSDAILDARPQHAFYPTYIRNEKDYPLSQAIRDGLEAKNHEIK-DSTLNAIIQGIFVDDGKIYAKSDPRKEG 1964
+ AVA DAKQCS+IGRD L+ GG AVD AIAAL+C G++N+HS GI GG F+ IY+ + ++ +++ RE P T F+ +++ ++ GG +V VPGE+RG + AH+++G+L WA L QPSI LA +G +GK + L++ + ++ P L E+F D G + + A++ + + A G+L+ ++D+ A GG +TAEDL NY L + P+ I L D + L+ P G VL+ ILN++KG S E K L YH+IVE+F+F+YA R LGDP V +E R++ S+ A R +I+ +T P SYY P F T +D GT H+SV+ +DG+AVSAT TIN FG+K RS SGI++NNE+ D F++ S T NE P P N G++PLSS CP+++ QD V+MVVG +GGT+IT +TA II LW Y + A+ + R + P E++ + QA+ LE ++H + ST A++Q I G A SD RK G
Sbjct: 38 YTRAAVAADAKQCSKIGRDALRDGGSAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAREVAPRLAFATMFN-SSEQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQGFPVGKGLAAALENKRTV---IEQQPVLCEVFCR-DRKVLREGERLTLPQLADTYETLAIEGAQAFYNGSLTAQIVKDIQAAGGIVTAEDLNNYRAELIEHPLNISLGD-VVLYMPSAPLSGPVLALILNILKGYNFSRESVESPEQKGLTYHRIVEAFRFAYAKRTLLGDPKFVDVTE------VVRNMTSEFFAAQLRAQISDDTTHPISYYKPEFYTPDDGGTAHLSVVAEDGSAVSATSTINLYFGSKVRSPVSGILFNNEMDD-FSSPSIT----NEFGVPPSP-ANFIQPGKQPLSSMCPTIMVGQDGQVRMVVGAAGGTQITTATALAIIYNLWFGYDVKRAVEEPRLHNQLLPNVTTVERN--IDQAVTAALETRHHHTQIASTFIAVVQAIVRTAGGWAAASDSRKGG 564 The following BLAST results are available for this feature:
BLAST of TCONS_00051822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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