TCONS_00051863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051863
Unique NameTCONS_00051863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051863 ID=TCONS_00051863|Name=TCONS_00051863|organism=Clytia hemisphaerica|type=transcript|length=548bp
TTNACCGTATGCTTGTGGTAGTGGTATACCTGAGATCAAAACCATCTTGG
GTGGATTCATAATCAAAGGATATCTAGGGTACTGGACACTGGTTGTTAAA
TCATTTACACTGATCACTGCTGTATCTTCTGGATTATCTCTTGGTAAAGA
AGGACCTCTAGTTCACGTTGCTGCTTGCATCGGGAACGTTTTTGTTCGAC
TCTTCCCAAAGTATCATGGAAATGAAGCTAAACGGAGAGAGGTTCTTTCA
GCAGCGGCTGCGGCAGGTGTTTCAGTGGCTTTTGGCGCACCAATCGGTGG
TGTGCTCTTCAGTTTGGAAGAGGTCAGCTACTATTTTCCGATGAAGACGT
TATGGCGTACCTTCTTTTGTGCATTGATGGCAGCTTTAACCTTGGGCTAT
ATGAATCCGTATGGTAACGGTCGATTGGTCATGTTTGCTGTTGATTACAA
TTTACCATGGCAACTCTTCGAACTCATACCTTTTATCATCCTGGGAGTGT
TCGGAGGTGTTTTTGGATCTTTATTCATAAAAGCTAATTTGTTTTGGT
Run BLAST on NCBI

transcript from alignment at scaffold_205:134200..141565-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051863 ID=TCONS_00051863|Name=TCONS_00051863|organism=Clytia hemisphaerica|type=transcript|length=7366bp|location=Sequence derived from alignment at scaffold_205:134200..141565- (Clytia hemisphaerica)
TTNACCGTATGCTTGTGGTAGTGGTATACCTGAGGTGAGTGTCATCTTTT
AACATCCATCTTCCTAAGAATTATATATCTTGCCTTGTGGTAAAGAAAAA
TCAAGATGACTATGCTTTTATTGCCAGTCTAGGTTGGGATGGAATTTGAA
ACATTCATAATCCATGAAAGTATTTCTTTTCAGTTACATTTCCAATCTCT
AAAGAACCATAAAAGCAAAGCAAAAATATTACTCAGTGGAACTTGAAAGC
AATNTTTCCAGTCATTAAAATTTACAATAAAGCTAATCGTTTTAATGTAT
ACCTTGATTCTTCTAATGTGCCTTCTCCACTCTCTTCTTCTGCTTCGTCG
TCTGTACTTTTATAAGTTGGTATATCATTATCATTCAATTCATCAATTTC
GTCAGAATCTTGGATTTGTACGTCCGAATCAGAGTCAGCTAGTAAACAAA
AATAAATGCTTTAGAATAGATTGAACTTAACACTATATTTTCTTGAAAAA
TGCAAATCATGTTACATTACATTGAAATTTGAAAATAACAAAACATTAGG
AACGCTCACCATCTAGAGTGCAAGAGGTAACTGCTTCATTTTCATTTTGG
TTTTCCTCGATTTCCACGCCTAAAAAAGAATTTTGATTCACCAACTCTAG
TTTTCAAGGTTTCAAGGCAGCTTTAATAAAAAAGATTGAGCATTTCTGCT
TGATTATTGAAAGAAATACAAAAAAGAAATACTTGAGAATAAATCGAACT
TAACTTTAGATTATCTTGAAAAATGCATATTACATTACATTACATAAAAA
ATAACAAAACCTTTTTATAGAACACTCACCATCTAGACTACAAGAAGTTC
CATCATTTTCATTTTCATTTGAATCATTTTGGTTTTTTTCGATTTCCATG
TCATTGGCTAGAAAAGAATTTTGAACCGACCCTTATTAACCTCTTATTCT
CAAGGCAGCTTTGATAAAAATCTTCAGTTCTATTTGTTCCTTAATTATTG
AAAGAAGTTTGTGTCATAAAAGTCATCTCACCTTAGATACCTATTGCTGA
ATGCAACTATATAGATAAAAAAGTTTTCAATTTTGATACAAATTACTTAC
TGCTTGTTTCTTTTTTCTTGGCAAGAAGCTTATCAAAAAAAGTTGGTTTG
CTTGAATTTCCAGTATCTGGAGGTGCCTTTCTTTTTCTTCCACCAACTCC
AACACGTGATTGACTGTATGGTTTCCTCTTGGAAGGATAACTGTGTTTAC
CAGTTTTACCCATATTAGTATTTAATATCTAGCAATTAGTATTATTGTTA
TTCTAATGATAAAAGTGAACAAAATGATAAAATTTTACCCTTTTACCCTT
TTTACTTGAATGCTTCTTCTCGTGTTTATCTAACTATAGATTAAGATCTT
ATGGTGTCAATTTTGGTGAAAAAAACCAATCTTCATAAAAATTGAAAAAA
AAGTGGAAAGAAAAAAACAATTAAAACATGTCTCTAATAATATAATAACT
CAATTAAAAATCTTCTCCTTTATTGTAGATAAAGATGGAGGGTAGTNAGT
ACATTGAACAATACTTTTCATTACCGACTTTACAGAGAAGGTTCGATTAC
ATTGTTTTTCTTTCGGCTGAATACATTTTTGATACTTTCCTTCATTTCTC
TGTTAAAAACAACCGATACTGCGAAATCACAAACTGGATTAAAATGGGCT
AAAAACTTTGCACTGTAAAACAATGCAGGGCCAATTGTTTTATTATTAAA
GCCAAATACACAAGCAATGAACGGTGTCCACAAAAATACAAAAGAGCAAA
CAATGGCAGAACACATTTTCAATGAACGTAATCTTTGCCCTTTCAGTTTT
TCTTCCTCTCTATTGGCAGCAACCTGTGTTTCATGCACATTTAACGATTG
GATAGATTGCAAATGCTTTTTGACTGTTCGGTATAATATGAAATTAATAG
AGGCTAAGATAGTACTTCCAAAAAGCACGATCGCAGTCCCCAAGATATAG
GTTGCGTTCGAGAAATATGTTAGAACTGTAAAAATGACACAAAGTAAAGA
AATGATTCCAATACATTTGAAGATATACCCAATACCAAGTTCATCATACC
AGAAAGGGTATCTAACAGCTAAATACCGATCGATAGATATCACCAGAGTA
TAACACAACTGATTCGATATGAAAAGAGCTTGTAGCTGTATCATGAAGTC
AGGAAATTCGATATGCAACCAGTACAAAATCCAATATGAAATATTCAGCA
GATTATAGGATAGATGCGATATGAATAGAGCTAGAAGAAAGATGTTCTTA
GCTCGTTTTTCGAACTTCAGAGCGATAATTGTAGTTGCGAACGTTGTTAT
AATTGCGATGAAAACTGCTTGGATGAAAAACGCATACATAATATCTTGCA
TTTTGTTATATTTGTACTGTACTGCAATGAAAGGAAAATTGAACTTCATA
ATCTTAAGAGTCTGCTAAATGACGCGCCTTACGCGCCCACGCGCCCACAA
ATGTTACGGCCCCACGCGCCTACGTTATGAATTTTGCATATAGTTTTTAA
GTAAATACAGTCACTATGTAACATTAGTACAATAACTCAAATACGCATCC
TGTCAGAGGAGTGTAAAGAGATGGAAAAACAGCTTCTTGAAAACAATGGG
AATAAGGCTCGTCATTTAAGGGAGTTTGGTGGCTAATGGATTCCTTTTGT
TGTTGATCAAAAAAATCTGCATAAATAGTGCGATATGATGAATTCTTTTG
TTTTGAGTCTAATTATGCGTAAACTTTAGGGGCTTGTATTCTGTTTCCAG
ACCAAAAGATACCTATATTTTCTTGCTCAGTATTTCCTAGCAATTCTAAT
GATATAACCGCATCACGACCGCATCGTTAGATAAAACGCCTGAATGCAGA
AAAGTAAGAAATTTAATCTGCTTTTCCTGAATCTCTACCAAATTTTGTCA
AAACAATTTAAAATCATTGTGATGAGAATTTTTAAGGCAATAAAATGGTT
TAAAATTTGTTATGTCTAAAGAGGGCGATTTAGTAAGGTTTGTTAGCACG
AAAATACTTTAGATGGTGATAAAATCATGAAATTTGGCACAGGTGACCCT
TAGACGGTCTAAAACTTGATTTAAAACAGAAACACCAATTTTTTTTCACC
CGGTTACCTGCCAGATGCTTTTATCGCCATCTGAAGTATTCTTACGTTTT
TATGTGCTAACAGACCTTACTAATCTATAGTATAAAGCATATTCCAGCAT
ATAGAAACCAGTCAATTTTTAGGACGAGCCGCCTTTTTTGAACTTTCTCT
AACGACCTTATCAAAGCTAAAACAAAGCGTTTTCAATGGAAATTACTTTT
GGTAATCAGAGAAGCTGGTTTTCTTATTCATCCCATTTCTCTGATCCTAC
CAAAAACGAGATATTCTTCTTTTTGCTGTCTTCCTTATTAGGTTCTATTC
TTTAATTTCTATATGATTCACATATTTCTCTAAAATCAAACCCATTGATA
GAACAAAGGACCAAATTTCCGTCTCCTGGGGGAATAGGGATATTAAAATT
TAAAACTAAAACGTGATTCAAGCACCACAGATAATTTGATTGAATTCAGA
ATTAGAATTACTTTAGGCGTACAAACTTTCGCGAGCCGAAACGATTTTCG
TGCGAGAATTTTGGCCTTTTTCGCGAAAGTTAATGTTTTTTAAAATTCTT
TACAGGGCAATTCGTAAAAGTTTTATGTTCGTGAAAATTTCTCAAAAATT
TCCGAAATTGAAAAACCTCGAAATTGTAATAAATATCAAATTTTTGGCAT
ATTTTTATCCTTTAATGCCTTTTTAAAGTCGAAAAGCAACCGTCTTCATC
GCATTTGATTTAAGCAATATTTTTCACTTTTAAGGCAATTTTCATTCGAC
AATTTCAATTTTTATCCAACGATTCGTGAAAGTTTATGCTCGCGAAAAAC
ATTTTTTCCTCAAATTTGCGAAAGTAAATGTCTTAAATTTCGCGATTTTT
CGACCTCGCGAAAGTTTGTACGCCTAAAATAGAAGATATTTTTACGTTTC
CAGTAGCAGAAAAACCCCTAAAAAAAGATGGATTACCCAAGAAAAACATT
TTTCATACGTTTTTTTCAAACAGATCAAAACCATCTTGGGTGGATTCATA
ATCAAAGGATATCTAGGGTACTGGACACTGGTTGTTAAATCATTTACACT
GATCACTGCTGTATCTTCTGGATTATCTCTTGGTAAAGAAGGACCTCTAG
TTCACGTTGCTGCTTGCATCGGGAACGTTTTTGTTCGACTCTTCCCAAAG
TATCATGGAAATGAAGCTAAACGGAGAGAGGTGAGAAGACTTCATAATAT
ATTTCTTTCATACCCTATTCATTCCTATTGTAACTTTTGTTTTGAATAAG
GTTTTCCTTTTTTCAATTTTTTTGTAATTTCGAAGTTATTAGGAACCTAT
CTTCTTGTCCTGATGGCCATAATTTAAAGAAGATATGTTTTGAACGTTTT
TGCTAATGAAAGTATTTCCAGCTTGTTTGTAAAGTATATAAAACAAACAT
CTTGAAGACAATTTCCCCCTTTTAATTCTTGCATACATTTTTTCGTGTTT
TTATTAATTGCTACTTGATTGGAATGATCTGTTCATAAACTGATTTTTTC
CCATCTGAACAAAGTCTTTTTTATGATATTTCAGGTTCTTTCAGCAGCGG
CTGCGGCAGGTGTTTCAGTGGCTTTTGGCGCACCAATCGGTGGTGTGCTC
TTCAGTTTGGAAGAGGTAAAACTTAATTGAATAAAAACAGCCTATTTATA
TTCGTAGGAAATACAAATGGTAATACCAGATCAAATTTTACACATTTTTT
TTATAAGCAGCCAAGTTGCTAAGGCTCCAGTCCTAAAATTAGCCAATTTT
TTTCTTCACAGGGGGGGGGGGCAAGCAGTTAGTACAGAACACTATGTGTA
CTAACTGATTTTTGGAAAACTCTGTACCCCACCACCACCCCCTGTCACTT
AGTACACCGTGTACTAACTGTTTTTGACCTTGCTCAATATATATACCACC
CCTAAAAATAAGGATACGTCTCTCTACGGTGCATTCCAGGTGAATTTCAC
ACTCCAGAGAGGTTTTATGAGGTGTGTTTTTAACTGTTTTAATTAGTAGT
AACACTATCAATAATACATTTTTTAAACAGAAAACACAGCATGTTTTATC
AGCAACTTATCCACCATCTTTTAAATAATCTGTTTTCCCGATTATGGATC
GGATGATCGGATTACCAAAACAAAACAAAAAACGTTCGAAAGTTCGACAT
TTTCAAATTCGAATGTTTTATTTTGAATTATTTCTAAGAGTTCTAAGAGT
TCCTGGAAGTGTGATGTCATATGTCAAGCTGTTAAAAGGTATTCCTGACC
GTCCTAGAAAGAAGATCCATAAAAAAGATAGAATCATAAACCTGTCATAA
ACTGATAACAGTAAAATTCTCAGTTTTGAAATCAGTTACTACACCTTTTT
ACTTCCAAAATTCTGTATACACCACCCCTTTTGGCAGTTAGTACTACAGG
TGTACTAACTGCATTTCGCAAAATTGAAAAATGGACCCACCACGGTACTA
AGTGTCATGGGTGTCGTGTACTAACTGCTTCCCCCCCCTGTTCTTCACTA
TATTGTATAATCTAAAAGATTTTTAGATGCATGGCAAACGATAACCCTTG
ACCCAATAAGCATAAATATGGTATAATATCAGGGGTGGTCAGAAAATGAG
CTAGAATGCTAATCAACCCCAGCCCTGACCCAAAAATTGGTGCTGCTTAT
AAAAAAAACGTGTATTCCAGTTTTTGAGCATCTGTGTAGCTTTAAAATTA
TCTACAAGAGTGTTTTAGTTGAACATTCTTATAGCGGCCTATCAGTGTCT
CAATGTCAGAATATTGCATGAAAACGAGACGATTTCATTTGCATCCACCT
TATAACAACCCCAATTTCAGCACAATTTTTTTGACGTCACTTTTTCGAAT
ACAAGCGTCACAGAAAAGGAACCTGTGATTGTTTCCCTTCGTCTATCACA
TTTTTAATTGCGACTTTTCTAAAATATAGTTTAAGCGATTTTTTTCCGAA
TTACCTATTCGATAAAACATATCTGAAAAAATGAAAATTAGCTGGTTAGC
CCTTTAACTTAACTGTACACAGACCCAGTATCTACGGCTAATTTCAAAAT
TCATTTCCGTAGAGGGTCTGTTGTCATTGTCTTTTCTCATTTGAGATTTT
TCAAACCGACCGCTGCGATGAAGTATTGGTGAGAGAGGAGAGACGATGAG
AGAAGTGTTGCTATTTATAAATCATACTTCGTCGCAGAGGTCTCCGTACG
GGAATTTTTTATCAAACAGACAATGTGCACAGAGTGTACTACAAAGCGAT
AAACGTGAGATACACTCTGGTACAGAGTACCCTTTAACGGACACTTCCGT
TTTAGGTCAGCTACTATTTTCCGATGAAGACGTTATGGCGTACCTTCTTT
TGTGCATTGATGGCAGCTTTAACCTTGGGCTATATGAATCCGTATGGTAA
CGGTCGATTGGTCATGTTTGCTGTTGATTACAATTTACCATGGCAACTCT
TCGAACTCATACCTTTTATCATCCTGGGAGTGTTCGGAGTAAGTGTTTTT
TTTCTTGATTATTTGGTAGTATTAAATTTTAGATAAAGTATATGTAATCA
CATGATAACGAGTGCAATTCGAATATAATTGCACGAGTGATTTTTTTGTT
ATTAATTTTCCGAGTCCGAAAGGACGAGGAAAATTCGAAACAAAAAAATG
ACGAGTGCAATTTTCGAATTGTACGAGTTATTATGTGATTACGAGCTAAT
CGCACAATGGCTTTCACTACTTTTTCCCAGTTAGGAAAGTAAATCACAGA
AATTACACTGAGAGTTTTAGATTTTTCTCTTCTCTTTATGTCTTTCTTTT
ATTGTTGTTTATTGATTTTCTTTCTCACAAAATAAATTTCGAATGCAATT
AAAACGTTCGATGCAAAGAAAATGTAAGAAAAAACATATAAATCACTTTT
TTGTACATTGGCGCGGCATCGAAGAGTGTGATTAACGATTAATTGCTCTC
TACATGATGCAATTAACGATTAATTGCTCTCTTTGAGGGCGTGCCAAATA
AGAAAAAATAACCCATCGTGCGATTAATGGTATAATTTACGATTAAGAAT
TTTTTGAGGATTGAAGTAACCTTATTTCCGAGAGGATTTGGAAAAGCCAG
CAACAAATATTCACAAATCAATGCAGAGAAAATAATTGCTAAATTTATGG
ACTGGCGTATCTTTCATTTTCAGGGTGTTTTTGGATCTTTATTCATAAAA
GCTAATTTGTTTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032821XLOC_032821Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051863-exon-scaffold_205-1575043694:141532..141565TCONS_00051863-exon-scaffold_205-1575043694:141532..141565Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1575043694:137236..137442TCONS_00051863-exon-scaffold_205-1575043694:137236..137442Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1575043694:136801..136881TCONS_00051863-exon-scaffold_205-1575043694:136801..136881Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1575043694:134928..135110TCONS_00051863-exon-scaffold_205-1575043694:134928..135110Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1575043694:134200..134242TCONS_00051863-exon-scaffold_205-1575043694:134200..134242Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1510915933:141532..141565TCONS_00051863-exon-scaffold_205-1510915933:141532..141565Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1510915933:137236..137442TCONS_00051863-exon-scaffold_205-1510915933:137236..137442Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1510915933:136801..136881TCONS_00051863-exon-scaffold_205-1510915933:136801..136881Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1510915933:134928..135110TCONS_00051863-exon-scaffold_205-1510915933:134928..135110Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1510915933:134200..134242TCONS_00051863-exon-scaffold_205-1510915933:134200..134242Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1491911889:141532..141565TCONS_00051863-exon-scaffold_205-1491911889:141532..141565Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1491911889:137236..137442TCONS_00051863-exon-scaffold_205-1491911889:137236..137442Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1491911889:136801..136881TCONS_00051863-exon-scaffold_205-1491911889:136801..136881Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1491911889:134928..135110TCONS_00051863-exon-scaffold_205-1491911889:134928..135110Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1491911889:134200..134242TCONS_00051863-exon-scaffold_205-1491911889:134200..134242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:134200..141565 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.62112	2.11202	1.81549	0	1.09516	0.00515613	1.03263e-06	2.41972	5.82322	2.85592	7.92132	5.68906	7.4631	5.08877	6.29784	9.00565	8.83471	5.81586	2.41083	7.44866	4.37843	3.55596	6.09864	6.70137	1.14303	0	2.49527	2.1817	3.45165	7.26785
Blast
[Close]
BLAST of TCONS_00051863 vs. Swiss-Prot (Human)
Match: CLCN5 (H(+)/Cl(-) exchange transporter 5 OS=Homo sapiens GN=CLCN5 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.416e-67
Identity = 121/156 (77.56%), Postives = 135/156 (86.54%), Query Frame = 2 
Query:    5 PYACGSGIPEIKTILGGFIIKGYLGYWTLVVKSFTLITAVSSGLSLGKEGPLVHVAACIGNVFVRLFPKYHGNEAKRREVLXXXXXXXXXXXXXXPIGGVLFSLEEVSYYFPMKTLWRTFFCALMAALTLGYMNPYGNGRLVMFAVDYNLPWQLFE 472
            PYACGSGIPEIKTIL GFII+GYLG WTLV+K+ TL+ AVSSGLSLGKEGPLVHVA C GN+    F KY  NEAKRREVLSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFP+KTLWR+FF AL+AA TL  +NP+GN RLV+F V+++ PW LFE
Sbjct:  163 PYACGSGIPEIKTILSGFIIRGYLGKWTLVIKTITLVLAVSSGLSLGKEGPLVHVACCCGNILCHCFNKYRKNEAKRREVLSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFTLRSINPFGNSRLVLFYVEFHTPWHLFE 318
The following BLAST results are available for this feature:
BLAST of TCONS_00051863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLCN52.416e-6777.56H(+)/Cl(-) exchange transporter 5 OS=Homo sapiens ... [more]
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