TCONS_00051865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051865
Unique NameTCONS_00051865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051865 ID=TCONS_00051865|Name=TCONS_00051865|organism=Clytia hemisphaerica|type=transcript|length=795bp
GAGAATTACACAGACaggaaaaaaattcgaaaactaTTTTTGTTGAGTCA
AATCGGAAAATGTTTAAGTTACTAGTTTCATCGCTCGTTTTGCTGGTCAT
TGCAACTTTTGCATCTTCAGCCCCTGTTAAAGATAACGACTACATCCCCT
GTTCGGTAGAATGCTACGCGAGTTACCAAGAGCAATGTCGACAGTCGTCC
AAAACACAGAATGATCATTATTTTTGCACGTCGAAATTCAATCAATGCAT
CAAGCAGAAGAAATCGTGTCATCGTCTGTTTTTATTCAactctttgaaaa
agaaattgcagAGATTTCAGAAAGCAATCAATTTGGTGAAATTAATGTAA
TACTTTTCGTCATTGGTTGAGCTTTATCAACGGAAAGAATAAAGCGAAGA
CCGTCAAGAAAGATTTAACGGCTCAGTAAGTCGTACTTCAAACTTTActc
atctttttaaaaaacagCGAAGGTCtctttctgacgtttttcctatATAG
AGAGACTTTACTTTGTAAGGCTAAAGAGTATATGACCGGAATCTAAAAAG
AATTATTGGTCTATATCTTCGAGAATTGATTTTAGCATAGGTTTTCCGAA
ATTTTGTaacgattaaaaaattttttgactaaGTGGGTTCAAGTTCAGAA
TCCTGATAAACAAAGATtatattaaaagatttttgaaagtaatattttat
attatattggATGTGTAAATTTTTGCttgtataaaaaaataaattttatt
tagaaaattttataaaaatattttaataaaattatgGTATACGCT
Run BLAST on NCBI

transcript from alignment at scaffold_205:195717..197919-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051865 ID=TCONS_00051865|Name=TCONS_00051865|organism=Clytia hemisphaerica|type=transcript|length=2203bp|location=Sequence derived from alignment at scaffold_205:195717..197919- (Clytia hemisphaerica)
GAGAATTACACAGACAGGAAAAAAATTCGAAAACTATTTTTGTTGAGTCA
AATCGGAAAATGTTTAAGTTACTAGGTGAGTGTTTTAAAATGTCTCTGGT
TTAGACTGGGTTTAGACTGATTCTCTGATTGTCTTTGCTCTAGCATCAGA
AAGTTTTTTAAGTAGAATATTTCGAGTATCGACTTCAGTTCGCATTCGTC
ACTTTTTCTTTTGGATATAATGTTTAGCTCAGGTTTAGACGGCCCACTTT
TCGGCCTGTCTATNTTCGATTTTTATGTTTTGATTTACTTTTGAAATATT
CTTTTCTATGAAATGAAATTGTTTTGTTTTGAAAAGAATTCGAATGTCAT
TAATAAGTACGATCGTTAAATACATTCGAAAACATTTAAAACAAAAGAAG
AGAGAAAAAGGCAAGTCTCGGCAGTAATTAANGTACCGGGTGCACCAAAA
AAAAGTATACAACTTTGTTGAGATATTGTGAGCTTCAGGATTTAATTTTT
TTGTTCATTCTTTTTTTATTGTATGGAGGATGCTCTAACTTGAATTTTGA
GCTATTATACATTAAATTTGAAAACGTAGTTCGAAAATTATTTTAAAAAA
ACTGACTTTTTTTTAACGTCGAAATTTCAAAAAACCATGAAAAACAGCGA
TCAAACTTTTTTTCTAGACACTTACCTTGTTTACACATAAAAATGCCAAA
AATTANGACTAAAAGTCATAATTTTAAAACACAAACAAAGCGAAAGCGAA
AACGAAAGTGACACACAGACACACAAAGCACCGCTATTAATATATAGAAG
GNACAACTGTGTTCATCAAAACTGGTCACAGAATTTAAGAATATGGTAAA
ACAAGCTATTCCCATGTAAGATAATATTTTTGGAAAAGCTGAAATTCTTT
TTGGAAATCTCCAAGGTTTTGATGTTATGCTATGTGAGAAAATTATTGAA
AAAATAGATCATCATTCCTCGACTAGTTGTTCAAAGAACTTGGGTCTGCA
TTGAGTTTGATGGTGTTGGAAATATTCATGACGTGCAAATAAGATGGGCA
AACTGTTGGCAAAATCTAAGATAAGAGAAAAAAGAATAAAAGAAACAATG
AAATTGTTTTTTTGTCATTTTGTCTTATTTATAGCGTGATTGCTGTTTTT
AATGATTTTTTGAAATTTCGACATGGAAAAAAAGTTAGTTTTTTGAATAA
ATAACCTCTGAACTGCTTTTTCAAATTTAATGTATAATAGCTCAAAATTC
AAGTTAGAGCACCCTCTATACAATAAAAAAAGAATGAACAAAAAATTTAA
ATCCTGAAGCTTACAATATCTCGACAAACCTGTATACTTTTTTTGGTGCA
CCAAAATTTGTGCATTAAAGTGGACGAAAAGTGTAAATCAAAGCTTATTT
CGTTTAATACATACCATTTACCTGAAACATGCACTGTCTAAAATTAATTA
TAAAAATAATTTTCTAATTCCTCCTCTTTACAGTTTCATCGCTCGTTTTG
CTGGTCATTGCAACTTTTGCATCTTCAGCCCCTGTTAAAGATAACGACTA
CATCCCCTGTTCGGTAGAATGCTACGCGAGTTACCAAGAGCAATGTCGAC
AGTCGTCCAAAACACAGAATGATCATTATTTTTGCACGTCGAAATTCAAT
CAATGCATCAAGCAGAAGAAATCGTGTCATCGTCTGTTTTTATTCAACTC
TTTGAAAAAGAAATTGCAGAGATTTCAGAAAGCAATCAATTTGGTGAAAT
TAATGTAATACTTTTCGTCATTGGTTGAGCTTTATCAACGGAAAGAATAA
AGCGAAGACCGTCAAGAAAGATTTAACGGCTCAGTAAGTCGTACTTCAAA
CTTTACTCATCTTTTTAAAAAACAGCGAAGGTCTCTTTCTGACGTTTTTC
CTATATAGAGAGACTTTACTTTGTAAGGCTAAAGAGTATATGACCGGAAT
CTAAAAAGAATTATTGGTCTATATCTTCGAGAATTGATTTTAGCATAGGT
TTTCCGAAATTTTGTAACGATTAAAAAATTTTTTGACTAAGTGGGTTCAA
GTTCAGAATCCTGATAAACAAAGATTATATTAAAAGATTTTTGAAAGTAA
TATTTTATATTATATTGGATGTGTAAATTTTTGCTTGTATAAAAAAATAA
ATTTTATTTAGAAAATTTTATAAAAATATTTTAATAAAATTATGGTATAC
GCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032823XLOC_032823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051865-exon-scaffold_205-1575043694:197845..197919TCONS_00051865-exon-scaffold_205-1575043694:197845..197919Clytia hemisphaericaexon
TCONS_00051865-exon-scaffold_205-1575043694:195717..196436TCONS_00051865-exon-scaffold_205-1575043694:195717..196436Clytia hemisphaericaexon
TCONS_00051865-exon-scaffold_205-1510915933:197845..197919TCONS_00051865-exon-scaffold_205-1510915933:197845..197919Clytia hemisphaericaexon
TCONS_00051865-exon-scaffold_205-1510915933:195717..196436TCONS_00051865-exon-scaffold_205-1510915933:195717..196436Clytia hemisphaericaexon
TCONS_00051865-exon-scaffold_205-1491911889:197845..197919TCONS_00051865-exon-scaffold_205-1491911889:197845..197919Clytia hemisphaericaexon
TCONS_00051865-exon-scaffold_205-1491911889:195717..196436TCONS_00051865-exon-scaffold_205-1491911889:195717..196436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:195717..197919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.94745	0.607307	0.101792	0	0	0	7.16006	16.086	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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