TCONS_00051912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051912
Unique NameTCONS_00051912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051912 ID=TCONS_00051912|Name=TCONS_00051912|organism=Clytia hemisphaerica|type=transcript|length=778bp
AGGATATTGAAGGTGATGTACCCAcaggaaaaatgacgtcatcaaagtgT
GAAGGTTGGGCAAAAAAAGGATTTTGCACAAGTGACAAATATAAGAAATT
CATGTCAGACAAATGTTGCCAATCTTGTAAAAATTTGAACACTCCAAAAA
CAACTGCTAAACCTGAAGTGGTAAAGGATGACACCTGCACTAAAGACATT
GAAGGTGATGTGCCTGcaggaaaaatgacgtcatcaaagtgTGAAGGTTG
GGCAAAAAAAGGATTTTGCACAAGTGACAAATATAAGAAATTCATGTCAG
ACAAATGTTGCCAATCTTGCAAAAATTTGAACAAACCAGCATGTACAGAC
AATGCATCTTATAAAGACAAATGTGATGGATGGGCGTCCAAAGAAATTTC
CGAATGCGCTGTTAATTCTTGGATGCCAAAGAACTGTTGTGCTTCGTGCA
AAACACATTGTGGCAAAGATAAACACGATTCGGAGAAATGCAAAAAATGG
GCCAAAGAGAAATTCTGTACAaaggataaaaacaaaaagtggATGGCTCA
AAATTGTTGCTTCTCATGCAAGagTTATGGCTTTGAATCCTAAGTTTGAA
ATGGCTTGAGATGTCAATCCACTTTATTGTAAAAATAAATTCTGATTTCT
ATGTGATTTATGGTTACCGTGAACATCACAGTATATCCAGCCTGAGAATC
TACTCAGTAAACACTGCATATCTAATTTACAGTGGTAAACTATATAATAT
ATACTGGACGGAAAAAAGAGAAACCCCT
Run BLAST on NCBI

protein sequence of TCONS_00051912-protein

>TCONS_00051912-protein ID=TCONS_00051912-protein|Name=TCONS_00051912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
DIEGDVPTGKMTSSKCEGWAKKGFCTSDKYKKFMSDKCCQSCKNLNTPKT
TAKPEVVKDDTCTKDIEGDVPAGKMTSSKCEGWAKKGFCTSDKYKKFMSD
KCCQSCKNLNKPACTDNASYKDKCDGWASKEISECAVNSWMPKNCCASCK
THCGKDKHDSEKCKKWAKEKFCTKDKNKKWMAQNCCFSCKSYGFES
Run BLAST on NCBI

transcript from alignment at scaffold_206:108987..111149-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051912 ID=TCONS_00051912|Name=TCONS_00051912|organism=Clytia hemisphaerica|type=transcript|length=2163bp|location=Sequence derived from alignment at scaffold_206:108987..111149- (Clytia hemisphaerica)
AGGATATTGAAGGTGATGTACCCACAGGAAAAATGACGTCATCAAAGTGT
GAAGGTTGGGCAAAAAAAGGATTTTGCACAAGTGACAAATATAAGAAATT
CATGTCAGACAAATGTTGCCAATCTTGTAAAAATTTGAACAGTAAGTTAT
CCTTCATAATATCATACCGTCACCTCTGGTGGTGCTTTTCATTTTCAAAT
AAAAATAAAACCACCTTTTCTTTCAACTTGTACCGGTAGTTTCATTGTAC
TGAGATGTTCATGTAGGAACGCAATGCAGATATAGATACTAATAAGAAAA
ATTGCACACGACCTGCTTTTTTGTCATCAAATCTCCTTAAAGGAAGAGTT
TGATAATACTTTTGGAATATCACATGCATCTCTATAGCTAACTTAATGTT
CTCTTTTAGCTCCAAAAACAACTGCTAAACCTGAAGTGGTAAAGGATGAC
ACCTGCACTAAAGACATTGAAGGTGATGTGCCTGCAGGAAAAATGACGTC
ATCAAAGTGTGAAGGTTGGGCAAAAAAAGGATTTTGCACAAGTGACAAAT
ATAAGAAATTCATGTCAGACAAATGTTGCCAATCTTGCAAAAATTTGAAC
AGTAAGTCGGATTTGTTCTATCTTTTGTTGACTGAGATTTCTTGATTTTT
TTCATAGAATTGTTATTTCGTCCTGGTGCATAGAAACCTATAATAGTCCA
CACTGCTAGGGGAAAGAAGAGATAAGCCAATATTTCAATTATAATTTTCA
GGTATTCTAAAAGCAAAATTTCAATGTAAAATTACTATGAAATAGGGCGT
TCTCTAAAACATATTCATCTGTCCTACACCTCAAAAATAACGATTTCTTC
TATAGAACCAGCATGTACAGACAATGCATCTTATAAAGACAAATGTGATG
GATGGGCGTCCAAAGAAATTTCCGAATGCGCTGTTAATTCTTGGATGCCA
AAGAACTGTTGTGCTTCGTGCAAAACACGTGAGTAATAGTATGTTATGAT
AATGAAATATATCGTTTATTCCGTTAAATAAATACGGCAACGTTATTGGC
CAAGGGATGAAAATAGCTTCAACTACGGATTCGGAGCAATTCGAACTCGT
CGAGACGAATTATTCTACTTTTCAACGAAATTATTAGCTGTCCAGTTAAA
GCCTGATGAAAATACTTTTCGTAATTCAAACGTCGAAAAGATGAGTTGAA
CATTGATATCGAACTAACACTTGTCAATGCCATTTCCGGCGGGGGTTTAG
CATCTGGAGAATTGTTTTATTAGAATGAAATTTAATACTGAAGGTTAATG
ATGCTTCGACCGTGTTAAAATAATTAATTTTGGGCTGTGGAAACTCCTCT
GAAATACTCACGAAATCCAGGGCGCAAAATCTGACAAAAAATAACCTCAT
CGTACCCAATCGATAGAAGTTTTCTTCGGCGAATTCAAAATATCTTCCCT
CCTTCTATAGATTGTGGCAAAGATAAACACGATTCGGAGAAATGCAAAAA
ATGGGCCAAAGAGAAATTCTGTACAAAGGATAAAAACAAAAAGTGGATGG
CTCAAAATTGTTGCTTCTCATGCAAGGTAAGATAGAATCAACTTCAAATC
ACCTTGAACCAGAAAGTTAGGCTGCTCTGTAGTATTAGTTAACCTATTCC
TCAAAAAGCAGCTGAAACTCGTAACAAAAACTGAAAGTAAAAGAAAACGA
AGTATGGATCATAATTAAATACTGTACACCTTTTTTTTAATTACCAGCAA
TTTTGTTGCAGCTCGGCTGTTCTTGTTTTTTGGCACTTGAGCCTTGTTCT
TACTTTTTAGTTGTTCTTATCAAGTTCTTATTTTTAGAAAAAAATACAGC
CGTTTTACCCTATATTTACTACTTTCGCCCTTATGTTCTAAAATCTCTCT
TGTAAAAATAAAGTGCGCAATGTTCCTTGAAATCAGCACATTTTTCTTTC
TTTTTAGAGTTATGGCTTTGAATCCTAAGTTTGAAATGGCTTGAGATGTC
AATCCACTTTATTGTAAAAATAAATTCTGATTTCTATGTGATTTATGGTT
ACCGTGAACATCACAGTATATCCAGCCTGAGAATCTACTCAGTAAACACT
GCATATCTAATTTACAGTGGTAAACTATATAATATATACTGGACGGAAAA
AAGAGAAACCCCT

Coding sequence (CDS) from alignment at scaffold_206:108987..111149-

>TCONS_00051912 ID=TCONS_00051912|Name=TCONS_00051912|organism=Clytia hemisphaerica|type=CDS|length=2955bp|location=Sequence derived from alignment at scaffold_206:108987..111149- (Clytia hemisphaerica)
AGTTATGGCTTTGAATCCTAAATTGTGGCAAAGATAAACACGATTCGGAG
AAATGCAAAAAATGGGCCAAAGAGAAATTCTGTACAAAGGATAAAAACAA
AAAGTGGATGGCTCAAAATTGTTGCTTCTCATGCAAGAACCAGCATGTAC
AGACAATGCATCTTATAAAGACAAATGTGATGGATGGGCGTCCAAAGAAA
TTTCCGAATGCGCTGTTAATTCTTGGATGCCAAAGAACTGTTGTGCTTCG
TGCAAAACACCTCCAAAAACAACTGCTAAACCTGAAGTGGTAAAGGATGA
CACCTGCACTAAAGACATTGAAGGTGATGTGCCTGCAGGAAAAATGACGT
CATCAAAGTGTGAAGGTTGGGCAAAAAAAGGATTTTGCACAAGTGACAAA
TATAAGAAATTCATGTCAGACAAATGTTGCCAATCTTGCAAAAATTTGAA
CAGATATTGAAGGTGATGTACCCACAGGAAAAATGACGTCATCAAAGTGT
GAAGGTTGGGCAAAAAAAGGATTTTGCACAAGTGACAAATATAAGAAATT
CATGTCAGACAAATGTTGCCAATCTTGTAAAAATTTGAACAAGTTATGGC
TTTGAATCCTAAATTGTGGCAAAGATAAACACGATTCGGAGAAATGCAAA
AAATGGGCCAAAGAGAAATTCTGTACAAAGGATAAAAACAAAAAGTGGAT
GGCTCAAAATTGTTGCTTCTCATGCAAGAACCAGCATGTACAGACAATGC
ATCTTATAAAGACAAATGTGATGGATGGGCGTCCAAAGAAATTTCCGAAT
GCGCTGTTAATTCTTGGATGCCAAAGAACTGTTGTGCTTCGTGCAAAACA
CCTCCAAAAACAACTGCTAAACCTGAAGTGGTAAAGGATGACACCTGCAC
TAAAGACATTGAAGGTGATGTGCCTGCAGGAAAAATGACGTCATCAAAGT
GTGAAGGTTGGGCAAAAAAAGGATTTTGCACAAGTGACAAATATAAGAAA
TTCATGTCAGACAAATGTTGCCAATCTTGCAAAAATTTGAACAGATATTG
AAGGTGATGTACCCACAGGAAAAATGACGTCATCAAAGTGTGAAGGTTGG
GCAAAAAAAGGATTTTGCACAAGTGACAAATATAAGAAATTCATGTCAGA
CAAATGTTGCCAATCTTGTAAAAATTTGAACAAGTTATGGCTTTGAATCC
TAAATTGTGGCAAAGATAAACACGATTCGGAGAAATGCAAAAAATGGGCC
AAAGAGAAATTCTGTACAAAGGATAAAAACAAAAAGTGGATGGCTCAAAA
TTGTTGCTTCTCATGCAAGAACCAGCATGTACAGACAATGCATCTTATAA
AGACAAATGTGATGGATGGGCGTCCAAAGAAATTTCCGAATGCGCTGTTA
ATTCTTGGATGCCAAAGAACTGTTGTGCTTCGTGCAAAACACCTCCAAAA
ACAACTGCTAAACCTGAAGTGGTAAAGGATGACACCTGCACTAAAGACAT
TGAAGGTGATGTGCCTGCAGGAAAAATGACGTCATCAAAGTGTGAAGGTT
GGGCAAAAAAAGGATTTTGCACAAGTGACAAATATAAGAAATTCATGTCA
GACAAATGTTGCCAATCTTGCAAAAATTTGAACAGATATTGAAGGTGATG
TACCCACAGGAAAAATGACGTCATCAAAGTGTGAAGGTTGGGCAAAAAAA
GGATTTTGCACAAGTGACAAATATAAGAAATTCATGTCAGACAAATGTTG
CCAATCTTGTAAAAATTTGAACAAGTTATGGCTTTGAATCCTAAATTGTG
GCAAAGATAAACACGATTCGGAGAAATGCAAAAAATGGGCCAAAGAGAAA
TTCTGTACAAAGGATAAAAACAAAAAGTGGATGGCTCAAAATTGTTGCTT
CTCATGCAAGAACCAGCATGTACAGACAATGCATCTTATAAAGACAAATG
TGATGGATGGGCGTCCAAAGAAATTTCCGAATGCGCTGTTAATTCTTGGA
TGCCAAAGAACTGTTGTGCTTCGTGCAAAACACCTCCAAAAACAACTGCT
AAACCTGAAGTGGTAAAGGATGACACCTGCACTAAAGACATTGAAGGTGA
TGTGCCTGCAGGAAAAATGACGTCATCAAAGTGTGAAGGTTGGGCAAAAA
AAGGATTTTGCACAAGTGACAAATATAAGAAATTCATGTCAGACAAATGT
TGCCAATCTTGCAAAAATTTGAACAGATATTGAAGGTGATGTACCCACAG
GAAAAATGACGTCATCAAAGTGTGAAGGTTGGGCAAAAAAAGGATTTTGC
ACAAGTGACAAATATAAGAAATTCATGTCAGACAAATGTTGCCAATCTTG
TAAAAATTTGAACAAGTTATGGCTTTGAATCCTAAATTGTGGCAAAGATA
AACACGATTCGGAGAAATGCAAAAAATGGGCCAAAGAGAAATTCTGTACA
AAGGATAAAAACAAAAAGTGGATGGCTCAAAATTGTTGCTTCTCATGCAA
GAACCAGCATGTACAGACAATGCATCTTATAAAGACAAATGTGATGGATG
GGCGTCCAAAGAAATTTCCGAATGCGCTGTTAATTCTTGGATGCCAAAGA
ACTGTTGTGCTTCGTGCAAAACACCTCCAAAAACAACTGCTAAACCTGAA
GTGGTAAAGGATGACACCTGCACTAAAGACATTGAAGGTGATGTGCCTGC
AGGAAAAATGACGTCATCAAAGTGTGAAGGTTGGGCAAAAAAAGGATTTT
GCACAAGTGACAAATATAAGAAATTCATGTCAGACAAATGTTGCCAATCT
TGCAAAAATTTGAACAGATATTGAAGGTGATGTACCCACAGGAAAAATGA
CGTCATCAAAGTGTGAAGGTTGGGCAAAAAAAGGATTTTGCACAAGTGAC
AAATATAAGAAATTCATGTCAGACAAATGTTGCCAATCTTGTAAAAATTT
GAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032854XLOC_032854Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051912-exon-scaffold_206-1575043694:111009..111149TCONS_00051912-exon-scaffold_206-1575043694:111009..111149Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1575043694:110549..110740TCONS_00051912-exon-scaffold_206-1575043694:110549..110740Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1575043694:110172..110294TCONS_00051912-exon-scaffold_206-1575043694:110172..110294Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1575043694:109574..109689TCONS_00051912-exon-scaffold_206-1575043694:109574..109689Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1575043694:108987..109192TCONS_00051912-exon-scaffold_206-1575043694:108987..109192Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1510915933:111009..111149TCONS_00051912-exon-scaffold_206-1510915933:111009..111149Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1510915933:110549..110740TCONS_00051912-exon-scaffold_206-1510915933:110549..110740Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1510915933:110172..110294TCONS_00051912-exon-scaffold_206-1510915933:110172..110294Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1510915933:109574..109689TCONS_00051912-exon-scaffold_206-1510915933:109574..109689Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1510915933:108987..109192TCONS_00051912-exon-scaffold_206-1510915933:108987..109192Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1491911889:111009..111149TCONS_00051912-exon-scaffold_206-1491911889:111009..111149Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1491911889:110549..110740TCONS_00051912-exon-scaffold_206-1491911889:110549..110740Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1491911889:110172..110294TCONS_00051912-exon-scaffold_206-1491911889:110172..110294Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1491911889:109574..109689TCONS_00051912-exon-scaffold_206-1491911889:109574..109689Clytia hemisphaericaexon
TCONS_00051912-exon-scaffold_206-1491911889:108987..109192TCONS_00051912-exon-scaffold_206-1491911889:108987..109192Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051912-proteinTCONS_00051912-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:108987..111149 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.748213	0.364813	0.211791	0.276273	43.4714	36.4779	47.8716	52.5328	62.6081	55.71	57.4847	99.7504	38.6479	32.0832	15.9545	27.3184	20.4077	38.2364	141.154	186.711	50.4581	51.1641	65.5568	65.3852	63.5294	45.8693	2.82136	5.93081	130.914	160.196
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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