TCONS_00051918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051918
Unique NameTCONS_00051918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051918 ID=TCONS_00051918|Name=TCONS_00051918|organism=Clytia hemisphaerica|type=transcript|length=368bp
TGTNACACCACAATGTGAAGAAGATGGTTCTTTCAAGAAAGTCCAATGTC
ATGCTTCCACTGGCTTTTGTTATTGTGTTGTACCTGAAACTGGAGCTAAA
GTCGTCGGAACTGAAGTCCGTGGAAAGCCAACCAACTGTGAAGCTACAGG
TGTCAATAACGCCAAGACATGCTTGAAACATTTGCAAGAATTAGATGCCA
AACCAGCATTGTTGGGAGCTTTCCGACCAGTCTGTCAAGCTAATGGACTT
TACGCTGAAACACAATGTCATGgTTCCACAGGATTTTGCTTCTGTGTTGT
ACCAGAAACTGGCAAAAAGATTTTGGGAACTGAAATTCGTGGAAAACCAA
AATCATGCAGAGCTACAC
Run BLAST on NCBI

transcript from alignment at scaffold_206:195199..196398-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051918 ID=TCONS_00051918|Name=TCONS_00051918|organism=Clytia hemisphaerica|type=transcript|length=1200bp|location=Sequence derived from alignment at scaffold_206:195199..196398- (Clytia hemisphaerica)
TGTNACACCACAATGTGAAGAAGATGGTTCTTTCAAGAAAGTCCAATGTC
ATGGTATGTTGTTATTGTCATTCTGGTTGCTAATGATGAGCTATCCCGTA
GGGGGCGCACTCGGTCTAAAAACATTCGGGTCTTGAAATTGGACCCTGGC
AGTACAAAGAAGATTTAACCAAATTTGACCTTTACGGTGTATTTCCTTGA
AAGAATTTCGTCCATTTTTAAAGAAATAATAGTCAGATTTTCCAATGTTC
TGGCCAAGCATCTTCGTTTTTCTTTAATCTTTAAACCCTTTTAGTGCAAT
TTTTCTAATTACGACCCTAAACTTTAGGAGTCTTGAAATAACACACCCTT
ACAATTTTCTTATACAGCTTCCACTGGCTTTTGTTATTGTGTTGTACCTG
AAACTGGAGCTAAAGTCGTCGGAACTGAAGTCCGTGGAAAGCCAACCAAC
TGTGAAGCTACAGGTTGATTTCAATTATATATCTTCTTTTTATTTATCTT
ATCTTAAAAAAGCCTGTTAACCGAAAAAACTTATTTTATTTTGCCTGATT
ATTTACTCAAATTACTTTACATGTACTTTTAGGTGTCAATAACGCCAAGA
CATGCTTGAAACATTTGCAAGAATTAGATGCCAAACCAGCATTGTTGGGA
GCTTTCCGACCAGTCTGTCAAGCTAATGGACTTTACGCTGAAACACAATG
TCATGGTAAATACCATTGCGTAATTTTGTTTGAATTCAAACGTTTATGAT
AAAATTAAAGCCTCTCAACAACAGTTTACAGGGAGGAGGATTTTATCATT
CATTATCAGATCAAGCAGATCTTTGACGAATGAATAAAGTCTGTTTTATG
TATGATTTATTGAGGAGCATTGGCCGAGTAGTCAACCGTCGTCAGCTCCT
CAAACCAGGGGTTCGCGGTTTGATTTGAATCCCATCTCCTTCCAATGTTC
CGTTCTGTTTTTAGATAACAGAGCCGGTTGGCCATGGGCCCATTGAAAAT
AATCGAATGACTTTCTAAATGTCCTAATTACTGAGCTATCCACGTAAAAT
ATTAACTATTGGATTAATAATCATTTTCCTGAAAAAATATTTTTTATTCT
TTAGGTTCCACAGGATTTTGCTTCTGTGTTGTACCAGAAACTGGCAAAAA
GATTTTGGGAACTGAAATTCGTGGAAAACCAAAATCATGCAGAGCTACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032858XLOC_032858Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051918-exon-scaffold_206-1575043694:196346..196398TCONS_00051918-exon-scaffold_206-1575043694:196346..196398Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1575043694:195936..196031TCONS_00051918-exon-scaffold_206-1575043694:195936..196031Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1575043694:195694..195816TCONS_00051918-exon-scaffold_206-1575043694:195694..195816Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1575043694:195199..195294TCONS_00051918-exon-scaffold_206-1575043694:195199..195294Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1510915933:196346..196398TCONS_00051918-exon-scaffold_206-1510915933:196346..196398Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1510915933:195936..196031TCONS_00051918-exon-scaffold_206-1510915933:195936..196031Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1510915933:195694..195816TCONS_00051918-exon-scaffold_206-1510915933:195694..195816Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1510915933:195199..195294TCONS_00051918-exon-scaffold_206-1510915933:195199..195294Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1491911889:196346..196398TCONS_00051918-exon-scaffold_206-1491911889:196346..196398Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1491911889:195936..196031TCONS_00051918-exon-scaffold_206-1491911889:195936..196031Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1491911889:195694..195816TCONS_00051918-exon-scaffold_206-1491911889:195694..195816Clytia hemisphaericaexon
TCONS_00051918-exon-scaffold_206-1491911889:195199..195294TCONS_00051918-exon-scaffold_206-1491911889:195199..195294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:195199..196398 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.668781	0.461061	1.07408	0.79293	1.51252	1.29734	13.9984	16.9527	84.788	53.2372	234.248	339.835	1717.04	1793.09	1651	2540.86	220.542	278.487	537.148	555.352	168.671	164.376	64.0939	60.6196	69.7031	58.4983	23.9033	30.9448	281.052	274.569
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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