TCONS_00051954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051954
Unique NameTCONS_00051954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051954 ID=TCONS_00051954|Name=TCONS_00051954|organism=Clytia hemisphaerica|type=transcript|length=429bp
AGAAAACATGGAATTCCACCCCAACAAACGTAGGTTGTGGTCGTTTATTT
GtgacaaagaaattttcatcagaaatatcaattttagagaaatttatTCT
ACAGTACGCCAAATGTTACTTTGCCATGTTTCTTTTCGATCGCTTTGGCt
cgttttgaaaaccaaaacaaacagcccAATGTTTAAGTCTTGGTTTCTCT
TTGCTTGACGACCAGCATGGCCCTCAAACTTTTGCAGACGCCTGGTTTTT
GCTACTGTTATATATTACGGCGATAATTAAGAGCAggttcaatagtttga
aacttagctttttttcattttggataaTATGTTTTTAAGTACAATGAATt
gagtaaaaaatattttggtctgaaaattcataatggcggatttatgcCAA
TGTGAAGTTttgcacttaaaaagtttttt
Run BLAST on NCBI

transcript from alignment at scaffold_206:237196..237624

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051954 ID=TCONS_00051954|Name=TCONS_00051954|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_206:237196..237624 (Clytia hemisphaerica)
aaaaaactttttaagtgcaaAACTTCACATTGgcataaatccgccattat
gaattttcagaccaaaatattttttactcaATTCATTGTACTTAAAAACA
TAttatccaaaatgaaaaaaagctaagtttcaaactattgaaccTGCTCT
TAATTATCGCCGTAATATATAACAGTAGCAAAAACCAGGCGTCTGCAAAA
GTTTGAGGGCCATGCTGGTCGTCAAGCAAAGAGAAACCAAGACTTAAACA
TTgggctgtttgttttggttttcaaaacgaGCCAAAGCGATCGAAAAGAA
ACATGGCAAAGTAACATTTGGCGTACTGTAGAataaatttctctaaaatt
gatatttctgatgaaaatttctttgtcaCAAATAAACGACCACAACCTAC
GTTTGTTGGGGTGGAATTCCATGTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032885XLOC_032885Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051954-exon-scaffold_206-1491911889:237196..237624TCONS_00051954-exon-scaffold_206-1491911889:237196..237624Clytia hemisphaericaexon
TCONS_00051954-exon-scaffold_206-1510915933:237196..237624TCONS_00051954-exon-scaffold_206-1510915933:237196..237624Clytia hemisphaericaexon
TCONS_00051954-exon-scaffold_206-1575043694:237196..237624TCONS_00051954-exon-scaffold_206-1575043694:237196..237624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:237196..237624 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.487112	0.314513	0.188355	0.178635	0	0.171849	0	0	0.553336	0	0.326761	0.359426	0.321752	0	0.0927757	0.298984	0.121059	0.126342	1.68068	0.187213	1.38396	0	0	0.172204	0	0	0.2385	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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