Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051967 ID=TCONS_00051967|Name=TCONS_00051967|organism=Clytia hemisphaerica|type=transcript|length=1048bpRun BLAST on NCBI transcript from alignment at scaffold_207:49319..50366- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051967 ID=TCONS_00051967|Name=TCONS_00051967|organism=Clytia hemisphaerica|type=transcript|length=1048bp|location=Sequence derived from alignment at scaffold_207:49319..50366- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00051967 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3) HSP 1 Score: 306.605 bits (784), Expect = 5.759e-97 Identity = 145/277 (52.35%), Postives = 194/277 (70.04%), Query Frame = 3 Query: 9 KCNVSGEGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839 KC V G+GF L+ H I EK CGK F+ SSNL TH R+HT++KPYKCD CGK F+ S +L H R+HTGE+PYKC+ CGK F+++ + ++H RVHTG++P++C+VCGKGF SS + H R+HTGEKPYKC+VCGK S L H R HT +KPYKC CGK F+++ L+ H +H+GEKP++C+ C+KRF+ + +L+ H R+HTGEKPYKC+TCGK F++ NL+VH HTGEKP+KC CG F + L H+ +H GE Sbjct: 404 KCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGE 680 HSP 2 Score: 298.516 bits (763), Expect = 7.376e-94 Identity = 145/276 (52.54%), Postives = 186/276 (67.39%), Query Frame = 3 Query: 12 CNVSGEGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839 C+ G+ F+ S L H I EK + CGK F+ S++L H R+HT +KPYKC+VCGK FT L+ H RIHTGE+PYKC CGK F+ S NL H RVHT ++PYKCD CGK F +S + H R+HTGEKPYKC+ CGK + +S + H R HT +KP++CNVCGK F++S + H +H+GEKPY+CE+C KRF S NL H R+HTGEKPYKCE CGK F+++ NL+ H HTGEKP+KC+ C F QA L H+ +H GE Sbjct: 349 CHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGE 624 HSP 3 Score: 295.819 bits (756), Expect = 7.387e-93 Identity = 144/277 (51.99%), Postives = 188/277 (67.87%), Query Frame = 3 Query: 9 KCNVSGEGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839 +C+ G+GF S L H + EK +CGK FT S+L+ H RIHT +KPYKC CGK F+ S +L H R+HT E+PYKCD CGK F+ S NL +H RVHTG++PYKC+ CGKGF +S + H R+HTGEKP++C+VCGK + SS + H R HT +KPYKC VCGK F S L H +H+GEKPY+CE C K F+ + NL+ H +HTGEKP+KC+ C K+F+++ +L+ H R HTGEKPYKC+ CG +F Q L H+ IH GE Sbjct: 376 RCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGE 652 HSP 4 Score: 290.041 bits (741), Expect = 1.458e-90 Identity = 136/276 (49.28%), Postives = 185/276 (67.03%), Query Frame = 3 Query: 9 KCNVSGEGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNG 836 KC+ G+ F S L H + EK CGK F+ +S+ ++H R+HT +KP++C+VCGK F+ S + H R+HTGE+PYKC+ CGK F S NL NH RVHTG++PYKC+ CGKGF +S ++ H +HTGEKP+KCD C K + +S L+ H R HT +KPYKC+ CGKAF++ L+ H +IH+GEKP++CE C K F+ S L H R+HTGEKPY C+ CGK F+++ + H R HTGE+PY C+VC F Q LI H+ +H G Sbjct: 460 KCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTG 735 HSP 5 Score: 289.656 bits (740), Expect = 1.876e-90 Identity = 145/279 (51.97%), Postives = 179/279 (64.16%), Query Frame = 3 Query: 3 RIKCNVSGEGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839 R C+ G+GF S L+ H + EK + CGK F SS+L HL IHT +KPY+CD CGK F+ S DL H R+HTGE+PYKC+ CGK F +L+ H R+HTG++PYKC CGK F SS + H R+HT EKPYKCD CGK + S L H R HT +KPYKC CGK F+ + + H +H+GEKP+RC +C K F+ S + H R+HTGEKPYKCE CGK+F S NL H R HTGEKPYKC CG F QA L H+ +H GE Sbjct: 318 RYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGE 596 HSP 6 Score: 267.7 bits (683), Expect = 3.001e-82 Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 3 Query: 27 EGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839 E F+ S L+ H + +KSP + KD + SS + + T KK Y C CGK F+ S +L+ H R+HTGE+PY C CGK F S +L H+ +HTG++PY+CD CGKGF S+ + H R+HTGEKPYKC+VCGK T S L+ H R HT +KPYKC CGK F+ S L H +H+ EKPY+C+ C K F+ S NL H R+HTGEKPYKCE CGK F+ + + + H R HTGEKP++CNVCG F Q+ H+ +H GE Sbjct: 270 EAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGE 540 HSP 7 Score: 249.98 bits (637), Expect = 1.478e-75 Identity = 131/268 (48.88%), Postives = 165/268 (61.57%), Query Frame = 3 Query: 48 ILKRHPLIDRS----EKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839 LK PL RS +K+ N C + F SS+L+ H ++H KK C K+ ++S + + TG++ Y C CGK F+ S NL+ H RVHTG++PY C CGK F SS + HL IHTGEKPY+CD CGK + S+ L +H R HT +KPYKC VCGK FT+ L+ H IH+GEKPY+C C KRF+ S NL H R+HT EKPYKC+ CGK F+ S NL H R HTGEKPYKC CG F A H+ +H GE Sbjct: 245 TLKVSPLTQRSIHTGQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGE 512 The following BLAST results are available for this feature:
BLAST of TCONS_00051967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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