TCONS_00051967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051967
Unique NameTCONS_00051967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1048

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051967 ID=TCONS_00051967|Name=TCONS_00051967|organism=Clytia hemisphaerica|type=transcript|length=1048bp
CTCGGATAAAATGCAATGTTTCGGGAGAAGGATTCGATTATTCTTGTATT
TTAAAAAGACACCCTCTCATTGATAGAAGTGAAAAGTCTCCTATACGTAA
TATTTGCGGTAAAGATTTTACAGTATCGAGTAACTTGAAAACTCATCTTA
GAATCCATACTGACAAGAAACCTTACAAGTGCGATGTTTGTGGTAAAGAG
TTTACATTCTCTGGTGACTTGAAAAGACATCTTCGAATCCATACTGGGGA
AAGACCTTACAAGTGTGATGCTTGCGGTAAAGAATTTGCAACATCGGGAA
ACTTAAAAAACCATATGCGTGTTCATACTGGCAAAAGACCTTATAAGTGC
GATGTTTGTGGGAAAGGATTCAAGATGTCTAGTGGTGTAAAACGGCATCT
TCGTATTCATACTGGTGAAAAGCCTTACAAGTGCGATGTTTGTGGTAAAG
AATGCACCGATTCAAGCCGATTGAAAGTACATTTTAGGACACATACTAGT
GATAAACCTTACAAGTGCAATGTTTGTGGTAAAGCTTTTACAAAATCACA
TATCTTGAAACAACATTTCCTTATTCACTCAGGTGAGAAACCTTACAGGT
GCGAAATTTGTGAGAAAAGATTTACGGCATCGTGTAACTTGAAAGTTCAT
ATGCGTATACATACCGGCGAAAAACCTTACAAGTGCGAAACTTGCGGAAA
GAAATTTACAGAATCAGGGAACTTGAAGGTTCATCTAAGAACACATACTG
GAGAAAAACCctataagtgcaatgtttgTGGATTAAGTTTTAAACAAGCA
CATTGCTTAATTAGACATCGTGGAATTCATAATGGAGAGTGAATGAGATC
CTCGGTATTTAGTATCATTCTCGAAACTCGAGTCTTTACGTGAAATATCA
TTTTGTAGGAAATTATTGTCACTTTGTGAACTTCGTTATAAATTATCGTT
TATTCTGGCACACTTTATTTTGGCTATAATTATACTCTATGTTGTGCGCA
GATTGGCAATagctgcgcagatttgtaattttcTAGCTGTGTATAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_207:49319..50366-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051967 ID=TCONS_00051967|Name=TCONS_00051967|organism=Clytia hemisphaerica|type=transcript|length=1048bp|location=Sequence derived from alignment at scaffold_207:49319..50366- (Clytia hemisphaerica)
CTCGGATAAAATGCAATGTTTCGGGAGAAGGATTCGATTATTCTTGTATT TTAAAAAGACACCCTCTCATTGATAGAAGTGAAAAGTCTCCTATACGTAA TATTTGCGGTAAAGATTTTACAGTATCGAGTAACTTGAAAACTCATCTTA GAATCCATACTGACAAGAAACCTTACAAGTGCGATGTTTGTGGTAAAGAG TTTACATTCTCTGGTGACTTGAAAAGACATCTTCGAATCCATACTGGGGA AAGACCTTACAAGTGTGATGCTTGCGGTAAAGAATTTGCAACATCGGGAA ACTTAAAAAACCATATGCGTGTTCATACTGGCAAAAGACCTTATAAGTGC GATGTTTGTGGGAAAGGATTCAAGATGTCTAGTGGTGTAAAACGGCATCT TCGTATTCATACTGGTGAAAAGCCTTACAAGTGCGATGTTTGTGGTAAAG AATGCACCGATTCAAGCCGATTGAAAGTACATTTTAGGACACATACTAGT GATAAACCTTACAAGTGCAATGTTTGTGGTAAAGCTTTTACAAAATCACA TATCTTGAAACAACATTTCCTTATTCACTCAGGTGAGAAACCTTACAGGT GCGAAATTTGTGAGAAAAGATTTACGGCATCGTGTAACTTGAAAGTTCAT ATGCGTATACATACCGGCGAAAAACCTTACAAGTGCGAAACTTGCGGAAA GAAATTTACAGAATCAGGGAACTTGAAGGTTCATCTAAGAACACATACTG GAGAAAAACCCTATAAGTGCAATGTTTGTGGATTAAGTTTTAAACAAGCA CATTGCTTAATTAGACATCGTGGAATTCATAATGGAGAGTGAATGAGATC CTCGGTATTTAGTATCATTCTCGAAACTCGAGTCTTTACGTGAAATATCA TTTTGTAGGAAATTATTGTCACTTTGTGAACTTCGTTATAAATTATCGTT TATTCTGGCACACTTTATTTTGGCTATAATTATACTCTATGTTGTGCGCA GATTGGCAATAGCTGCGCAGATTTGTAATTTTCTAGCTGTGTATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032896XLOC_032896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051967-exon-scaffold_207-1575043694:49319..50366TCONS_00051967-exon-scaffold_207-1575043694:49319..50366Clytia hemisphaericaexon
TCONS_00051967-exon-scaffold_207-1510915933:49319..50366TCONS_00051967-exon-scaffold_207-1510915933:49319..50366Clytia hemisphaericaexon
TCONS_00051967-exon-scaffold_207-1491911889:49319..50366TCONS_00051967-exon-scaffold_207-1491911889:49319..50366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_207supercontigscaffold_207:49319..50366 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.81103 4.68249 1.58056 1.0678 2.46691 1.21936 3.67337 3.62377 2.92084 2.7017 4.31794 2.21648 2.10975 1.98132 5.23509 5.73482 0.414666 1.34982 0.702227 0.603971 0.52922 0 4.45627 4.74189 4.99254 4.57624 0.361493 0.46602 2.55687 3.95258
Blast
BLAST of TCONS_00051967 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3)

HSP 1 Score: 306.605 bits (784), Expect = 5.759e-97
Identity = 145/277 (52.35%), Postives = 194/277 (70.04%), Query Frame = 3
Query:    9 KCNVSGEGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839
            KC V G+GF     L+ H  I   EK      CGK F+ SSNL TH R+HT++KPYKCD CGK F+ S +L  H R+HTGE+PYKC+ CGK F+++ + ++H RVHTG++P++C+VCGKGF  SS  + H R+HTGEKPYKC+VCGK    S  L  H R HT +KPYKC  CGK F+++  L+ H  +H+GEKP++C+ C+KRF+ + +L+ H R+HTGEKPYKC+TCGK F++  NL+VH   HTGEKP+KC  CG  F  +  L  H+ +H GE
Sbjct:  404 KCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGE 680          

HSP 2 Score: 298.516 bits (763), Expect = 7.376e-94
Identity = 145/276 (52.54%), Postives = 186/276 (67.39%), Query Frame = 3
Query:   12 CNVSGEGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839
            C+  G+ F+ S  L  H  I   EK    + CGK F+ S++L  H R+HT +KPYKC+VCGK FT    L+ H RIHTGE+PYKC  CGK F+ S NL  H RVHT ++PYKCD CGK F +S  +  H R+HTGEKPYKC+ CGK  + +S  + H R HT +KP++CNVCGK F++S   + H  +H+GEKPY+CE+C KRF  S NL  H R+HTGEKPYKCE CGK F+++ NL+ H   HTGEKP+KC+ C   F QA  L  H+ +H GE
Sbjct:  349 CHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGE 624          

HSP 3 Score: 295.819 bits (756), Expect = 7.387e-93
Identity = 144/277 (51.99%), Postives = 188/277 (67.87%), Query Frame = 3
Query:    9 KCNVSGEGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839
            +C+  G+GF  S  L  H  +   EK     +CGK FT  S+L+ H RIHT +KPYKC  CGK F+ S +L  H R+HT E+PYKCD CGK F+ S NL +H RVHTG++PYKC+ CGKGF  +S  + H R+HTGEKP++C+VCGK  + SS  + H R HT +KPYKC VCGK F  S  L  H  +H+GEKPY+CE C K F+ + NL+ H  +HTGEKP+KC+ C K+F+++ +L+ H R HTGEKPYKC+ CG +F Q   L  H+ IH GE
Sbjct:  376 RCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGE 652          

HSP 4 Score: 290.041 bits (741), Expect = 1.458e-90
Identity = 136/276 (49.28%), Postives = 185/276 (67.03%), Query Frame = 3
Query:    9 KCNVSGEGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNG 836
            KC+  G+ F  S  L  H  +   EK      CGK F+ +S+ ++H R+HT +KP++C+VCGK F+ S   + H R+HTGE+PYKC+ CGK F  S NL NH RVHTG++PYKC+ CGKGF  +S ++ H  +HTGEKP+KCD C K  + +S L+ H R HT +KPYKC+ CGKAF++   L+ H +IH+GEKP++CE C K F+ S  L  H R+HTGEKPY C+ CGK F+++ +   H R HTGE+PY C+VC   F Q   LI H+ +H G
Sbjct:  460 KCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTG 735          

HSP 5 Score: 289.656 bits (740), Expect = 1.876e-90
Identity = 145/279 (51.97%), Postives = 179/279 (64.16%), Query Frame = 3
Query:    3 RIKCNVSGEGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839
            R  C+  G+GF  S  L+ H  +   EK    + CGK F  SS+L  HL IHT +KPY+CD CGK F+ S DL  H R+HTGE+PYKC+ CGK F    +L+ H R+HTG++PYKC  CGK F  SS +  H R+HT EKPYKCD CGK  + S  L  H R HT +KPYKC  CGK F+ +   + H  +H+GEKP+RC +C K F+ S   + H R+HTGEKPYKCE CGK+F  S NL  H R HTGEKPYKC  CG  F QA  L  H+ +H GE
Sbjct:  318 RYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGE 596          

HSP 6 Score: 267.7 bits (683), Expect = 3.001e-82
Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 3
Query:   27 EGFDYSCILKRHPLIDRSEKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839
            E F+ S  L+ H  +   +KSP  +   KD + SS +     + T KK Y C  CGK F+ S +L+ H R+HTGE+PY C  CGK F  S +L  H+ +HTG++PY+CD CGKGF  S+ +  H R+HTGEKPYKC+VCGK  T  S L+ H R HT +KPYKC  CGK F+ S  L  H  +H+ EKPY+C+ C K F+ S NL  H R+HTGEKPYKCE CGK F+ + + + H R HTGEKP++CNVCG  F Q+     H+ +H GE
Sbjct:  270 EAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGE 540          

HSP 7 Score: 249.98 bits (637), Expect = 1.478e-75
Identity = 131/268 (48.88%), Postives = 165/268 (61.57%), Query Frame = 3
Query:   48 ILKRHPLIDRS----EKSPIRNICGKDFTVSSNLKTHLRIHTDKKPYKCDVCGKEFTFSGDLKRHLRIHTGERPYKCDACGKEFATSGNLKNHMRVHTGKRPYKCDVCGKGFKMSSGVKRHLRIHTGEKPYKCDVCGKECTDSSRLKVHFRTHTSDKPYKCNVCGKAFTKSHILKQHFLIHSGEKPYRCEICEKRFTASCNLKVHMRIHTGEKPYKCETCGKKFTESGNLKVHLRTHTGEKPYKCNVCGLSFKQAHCLIRHRGIHNGE 839
             LK  PL  RS    +K+   N C + F  SS+L+ H ++H  KK   C    K+ ++S  +     + TG++ Y C  CGK F+ S NL+ H RVHTG++PY C  CGK F  SS +  HL IHTGEKPY+CD CGK  + S+ L +H R HT +KPYKC VCGK FT+   L+ H  IH+GEKPY+C  C KRF+ S NL  H R+HT EKPYKC+ CGK F+ S NL  H R HTGEKPYKC  CG  F  A     H+ +H GE
Sbjct:  245 TLKVSPLTQRSIHTGQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGE 512          
The following BLAST results are available for this feature:
BLAST of TCONS_00051967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2355.759e-9752.35Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 ... [more]
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