TCONS_00051979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051979
Unique NameTCONS_00051979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051979 ID=TCONS_00051979|Name=TCONS_00051979|organism=Clytia hemisphaerica|type=transcript|length=449bp
caaaaatacgaaGAATTGACCgataattttcattcaaaaatacaaattga
CAGCCCTTTCATTGTGTAGAGCATagattgaaatatttctttataatttc
CGGGGGTAATAATGGGCATGCAAATTTTCCAGGGTCACTTAATAAtctga
aaatttccaggggtgGAAGCCTGACTTTGATTCGTCCACCCAACCTTCTT
TTAATATTGGATATAAATATTTCCTAGGGGTCTACCGTCTGGTTAAACCT
TCCAGGGTGCAGTAGACAAAGTTTACTTTGTCCACCCCAGTTTTTAAGGT
ACAAAGTGGTTTTTTCCAAGGgatataaaagtttttttcaaggGAGTTTA
GttaattttacatatttttccagggggttattATATAtgttatttttgaa
gaaaaagatttatcccTAAAAAGTTCCTCCACCCGCTGTATGGATAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_207:74332..74780

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051979 ID=TCONS_00051979|Name=TCONS_00051979|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at scaffold_207:74332..74780 (Clytia hemisphaerica)
TTTTATCCATACAGCGGGTGGAGGAACTTTTTAgggataaatctttttct
tcaaaaataacaTATATaataaccccctggaaaaatatgtaaaattaaCT
AAACTCccttgaaaaaaacttttatatcCCTTGGAAAAAACCACTTTGTA
CCTTAAAAACTGGGGTGGACAAAGTAAACTTTGTCTACTGCACCCTGGAA
GGTTTAACCAGACGGTAGACCCCTAGGAAATATTTATATCCAATATTAAA
AGAAGGTTGGGTGGACGAATCAAAGTCAGGCTTCcacccctggaaatttt
cagaTTATTAAGTGACCCTGGAAAATTTGCATGCCCATTATTACCCCCGg
aaattataaagaaatatttcaatctATGCTCTACACAATGAAAGGGCTGt
caatttgtatttttgaatgaaaattatcGGTCAATTCttcgtatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032904XLOC_032904Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051979-exon-scaffold_207-1491911889:74332..74780TCONS_00051979-exon-scaffold_207-1491911889:74332..74780Clytia hemisphaericaexon
TCONS_00051979-exon-scaffold_207-1510915933:74332..74780TCONS_00051979-exon-scaffold_207-1510915933:74332..74780Clytia hemisphaericaexon
TCONS_00051979-exon-scaffold_207-1575043694:74332..74780TCONS_00051979-exon-scaffold_207-1575043694:74332..74780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_207supercontigscaffold_207:74332..74780 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.79414	1.57528	2.28061	1.95716	1.99309	3.70315	1.19812	1.27985	1.37638	3.47137	0.251818	0.0900797	0	0	0	0	0.285849	0.209141	0.338984	0	2.85682	3.11623	0.202696	0	0	0.167164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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