TCONS_00051980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051980
Unique NameTCONS_00051980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051980 ID=TCONS_00051980|Name=TCONS_00051980|organism=Clytia hemisphaerica|type=transcript|length=627bp
AACCATGTAACCTGCAAGCATAACCTACGAGACAATGCGCTACTTTCAAa
atcaactttcatttttaggaaaaactgaattttgGATTTATATTCTAGCC
ACAAAGGCAACCAAGAAAGTTTCCACCACCTAGGTAGGATTTTTTCTATG
ATATGGATATTTCAATTTCCACCCATTTCCAAAGAAAAACCCTGTTGTGG
CAATAGCCCCTCTTAAATGCTGGCCCTCTCTTCGGAATTAAATAACGAAA
AGACTTTGCAAAAGCCCCTTACAACAAGTTTTTCAATATATGGTTGGCTG
GAACATCATATTAGCTGCAACATAAAATCAGATAATTCATTATTTGAAGT
TTATACCTTGTATTTCGTTGACCTTTACTTTTGGAGTCACGCTTCCCTCC
TTCAATACACTTAAAAGTTATTTCAGTGTATTTCAGTGCTTCATTGAAGT
TCTTCTTTTTGGATATCTTTTGCGAATTCAAAGCACTTTGATACGTTCTG
GAAGAAGCGGTATACATCTCTGTCATATGTTCCTCTTTGAACAGATTCAA
CTTCGTATGAAGTTCTTCATACGAAGAAAAGGTTTCCCCAATTACAAATT
CGTGCATTTTTTTATCTATTCATgctg
Run BLAST on NCBI

transcript from alignment at scaffold_207:75166..75792

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051980 ID=TCONS_00051980|Name=TCONS_00051980|organism=Clytia hemisphaerica|type=transcript|length=627bp|location=Sequence derived from alignment at scaffold_207:75166..75792 (Clytia hemisphaerica)
cagcATGAATAGATAAAAAAATGCACGAATTTGTAATTGGGGAAACCTTT
TCTTCGTATGAAGAACTTCATACGAAGTTGAATCTGTTCAAAGAGGAACA
TATGACAGAGATGTATACCGCTTCTTCCAGAACGTATCAAAGTGCTTTGA
ATTCGCAAAAGATATCCAAAAAGAAGAACTTCAATGAAGCACTGAAATAC
ACTGAAATAACTTTTAAGTGTATTGAAGGAGGGAAGCGTGACTCCAAAAG
TAAAGGTCAACGAAATACAAGGTATAAACTTCAAATAATGAATTATCTGA
TTTTATGTTGCAGCTAATATGATGTTCCAGCCAACCATATATTGAAAAAC
TTGTTGTAAGGGGCTTTTGCAAAGTCTTTTCGTTATTTAATTCCGAAGAG
AGGGCCAGCATTTAAGAGGGGCTATTGCCACAACAGGGTTTTTCTTTGGA
AATGGGTGGAAATTGAAATATCCATATCATAGAAAAAATCCTACCTAGGT
GGTGGAAACTTTCTTGGTTGCCTTTGTGGCTAGAATATAAATCcaaaatt
cagtttttcctaaaaatgaaagttgattTTGAAAGTAGCGCATTGTCTCG
TAGGTTATGCTTGCAGGTTACATGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032905XLOC_032905Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051980-exon-scaffold_207-1491911889:75166..75792TCONS_00051980-exon-scaffold_207-1491911889:75166..75792Clytia hemisphaericaexon
TCONS_00051980-exon-scaffold_207-1510915933:75166..75792TCONS_00051980-exon-scaffold_207-1510915933:75166..75792Clytia hemisphaericaexon
TCONS_00051980-exon-scaffold_207-1575043694:75166..75792TCONS_00051980-exon-scaffold_207-1575043694:75166..75792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_207supercontigscaffold_207:75166..75792 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16975	0.165533	0.1922	0.282056	1.6376	0.723574	2.50976	1.73667	1.25175	2.03762	1.75451	0.734841	0.944204	0.879322	0.0481948	0	0	0	0	0	0	0	0	0.353897	1.3669	1.49096	0.11638	0.124204	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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