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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051983 ID=TCONS_00051983|Name=TCONS_00051983|organism=Clytia hemisphaerica|type=transcript|length=1523bp
attttcactttttacaccctcaaaacaccttaaaacgatatctaattggg
gagaataatagtttttgtggtttgatttggcCTCAAACCAGCNCCGGGGG
TCgtgtttgtaaaaatttgtcatttaaaaaaaggtcacCGTCACATCTGT
GGAACATTACTTGAGTGACTTTTTTGAAGACAACACCAATTCCTCAAACA
GTCAATTATTGATAATTTCTAAATGAACTTTACGTAAAATTGGGATTTTG
GCGAACAATAAGAATTATAACGGCTGTCTGGTGAACACTTATAACTTAAC
CTACTTGGttgttggaaaattttgaaacggCAACACTAATGGCAATCAAA
ACAGATTTCAGTATCGCATTCTTACTCGGACATTGCGAGAACTCGCGAAA
ACCGACTGACAATAGATGGCCGAaacacgacgacgaacgaaaaccTGCAA
TATGCATCGATGAAGGTAGCAACATTCGGGTGGTTGAAGATAATCATGAT
GATAATGAACATTATAAGAACAAGATACGAGAAATAGAGAGATTCGACCA
TCAAACACTTTGTGGTAATCATAAGATTTTGGATGAAGGATCTGTTTCAT
CTGGTGAATCGTCTTCACCGCCGTTGCTGTTGAAATCACCAGACTTCAAT
GATGATAATTCATCATTTCATTACGATAAAGAATACGACGTCAATCAACC
ACATCGAACACGTACTGCATTTACACGAGATCAACTCaacaaacttgaaa
aagaatttaataAAGAAAACTACATCTCGCGAGCACGTCGAGTTGAACTC
GCTACCGATTTACAACTTCCCGAAAACACGATCAAAGTTTGGTTCCAAAA
TCGAAGAATGAAATCGAAAAGGAGGCGCCTTGGTTTCAATCGATATTATC
ACCCAGCATATTCTGGGTATTATATGCCGACCGGGTACTATCCATACCAC
GGCTCAAGAAATAATATGTGTTCGTGCTGCCCACCACATACAAACCGAGT
TGTCGATTATACTGCATTGTCACGAAAACCATCACCGTATCATCATCCAA
CTAGAGATCTAAAAGAACCACCCCATACTATTTTTAATAAACATTTTCAA
CGCCCTCTATCCGCCTTACCACCACCCACTCTACCAACCAGACGTTTTGA
AGATATTCGTGATTTTACTACACAAAAACATAATGACTTGAAACCATTGA
CTACTCCAAGAATTCTTGATGATAGAAGAAACCTACAGACAATCAATTCT
TTTCCTCCACTTCACACAGCACGCTCCTCAACGGTTTATCTTTGACTttc
gttatttttattttgaaattttagacttaaaactctgAGAGTGAAGTATT
GATTCCTTGTTTTGTTACTCGAAATTCCTTAACTTCCTAATTATACATAA
TTATTTTTCTAGCAATCTTTTTGAATAGTGAATTTTATCCGTTTTAGAGA
TATTAAACAACTTTGTAAATAAGAAAATTACAAATGAGAAAATTACCACG
ATAAAGTTAAAATACAATCAAAC Run BLAST on NCBI transcript from alignment at scaffold_208:33123..35260+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051983 ID=TCONS_00051983|Name=TCONS_00051983|organism=Clytia hemisphaerica|type=transcript|length=2138bp|location=Sequence derived from alignment at scaffold_208:33123..35260+ (Clytia hemisphaerica)
attttcactttttacaccctcaaaacaccttaaaacgatatctaattggg
gagaataatagtttttgtggtttgatttggcCTCAAACCAGCNCCGGGGG
TCgtgtttgtaaaaatttgtcatttaaaaaaaggtcacCGTCACATCTGT
GGAACATTACTTGAGTGACTTTTTTGAAGACAACACCAATTCCTCAAACA
GTCAATTATTGATAATTTCTAAATGAACTTTACGTAAAATTGGGATTTTG
GCGAACAATAAGAATTATAACGGCTGTCTGGTGAACACTTATAACTTAAC
CTACTTGGttgttggaaaattttgaaacggCAACACTAATGGCAATCAAA
ACAGATTTCAGTATCGCATTCTTACTCGGACATTGCGAGAACTCGCGAAA
ACCGACTGACAATAGATGGCCGAaacacgacgacgaacgaaaaccTGCAA
TATGCATCGATGAAGGTAGCAACATTCGGGTGGTTGAAGATAATCATGAT
GATAATGAACATTATAAGAACAAGATACGAGAAATAGAGAGATTCGACCA
TCAAACACTTTGTGGTAATCATAAGATTTTGGATGAAGGATCTGTTTCAT
CTGGTGAATCGTCTTCACCGCCGTTGCTGTTGAAATCACCAGACTTCAAT
GATGATAATTCATCATTTCATTACGATAAAGGTTAGATATTTGCTAGGCT
TTTGCTCATCCTctagtgaaaaaagttttttaaaggaagtatatctataa
agttctgcgattcagactagataTTCGCTAGTACATCTAATGTTAAAATT
TCTTCAGACTCATTAAAGTATATAAAGACGTTTACCTGTTTGAAAATTCT
GCATCATTAGCCAGAATTTCAAGCATAATGTGTCCTAATTTCTGTGTTAA
ATCCATTTTCTGTCCCAGACGAAAACTTTGTTTTAACCACTTTATATAGA
ACGTAATACCTTTCTAATGATTCACTCGATCCTTCCCTAAGAATGTTTTT
CATGTATCCTGAATCAGCTCGCTAATGTCCTCAGTTCCTGTTTTACATTG
TGATATTCTTCTCTGAGTGCAGAGTCTGTCTTCACTTGaacattttgttg
ttgttttttattgaaaggaatccTTCGGAATCCTTGCTCCCTATACTTTT
TACAAACATTTAAATGTTAAGAATTGCTCTTAGAAATTGTAAAAGTTCTT
AATTTAAATTCTAAGCGCTATAAAAAGGTTCGAACTTTAACTAGAGAAGG
TTATGTCTTCTATGTATTTTATTTTCGACTTGTTTTCTTTCTTCAGAATA
CGACGTCAATCAACCACATCGAACACGTACTGCATTTACACGAGATCAAC
TCaacaaacttgaaaaagaatttaataAAGAAAACTACATCTCGCGAGCA
CGTCGAGTTGAACTCGCTACCGATTTACAACTTCCCGAAAACACGATCAA
AGTTTGGTTCCAAAATCGAAGAATGAAATCGAAAAGGAGGCGCCTTGGTT
TCAATCGATATTATCACCCAGCATATTCTGGGTATTATATGCCGACCGGG
TACTATCCATACCACGGCTCAAGAAATAATATGTGTTCGTGCTGCCCACC
ACATACAAACCGAGTTGTCGATTATACTGCATTGTCACGAAAACCATCAC
CGTATCATCATCCAACTAGAGATCTAAAAGAACCACCCCATACTATTTTT
AATAAACATTTTCAACGCCCTCTATCCGCCTTACCACCACCCACTCTACC
AACCAGACGTTTTGAAGATATTCGTGATTTTACTACACAAAAACATAATG
ACTTGAAACCATTGACTACTCCAAGAATTCTTGATGATAGAAGAAACCTA
CAGACAATCAATTCTTTTCCTCCACTTCACACAGCACGCTCCTCAACGGT
TTATCTTTGACTttcgttatttttattttgaaattttagacttaaaactc
tgAGAGTGAAGTATTGATTCCTTGTTTTGTTACTCGAAATTCCTTAACTT
CCTAATTATACATAATTATTTTTCTAGCAATCTTTTTGAATAGTGAATTT
TATCCGTTTTAGAGATATTAAACAACTTTGTAAATAAGAAAATTACAAAT
GAGAAAATTACCACGATAAAGTTAAAATACAATCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051983-exon-scaffold_208-1491911889:33123..33803 | TCONS_00051983-exon-scaffold_208-1491911889:33123..33803 | Clytia hemisphaerica | exon |
| TCONS_00051983-exon-scaffold_208-1510915933:33123..33803 | TCONS_00051983-exon-scaffold_208-1510915933:33123..33803 | Clytia hemisphaerica | exon |
| TCONS_00051983-exon-scaffold_208-1575043694:33123..33803 | TCONS_00051983-exon-scaffold_208-1575043694:33123..33803 | Clytia hemisphaerica | exon |
| TCONS_00051983-exon-scaffold_208-1491911889:34419..35260 | TCONS_00051983-exon-scaffold_208-1491911889:34419..35260 | Clytia hemisphaerica | exon |
| TCONS_00051983-exon-scaffold_208-1510915933:34419..35260 | TCONS_00051983-exon-scaffold_208-1510915933:34419..35260 | Clytia hemisphaerica | exon |
| TCONS_00051983-exon-scaffold_208-1575043694:34419..35260 | TCONS_00051983-exon-scaffold_208-1575043694:34419..35260 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:33123..35260 + |
Blast
BLAST of TCONS_00051983 vs. Swiss-Prot (Human)
Match: EVX1 (Homeobox even-skipped homolog protein 1 OS=Homo sapiens GN=EVX1 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.481e-23 Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 3
Query: 693 NQPHRTRTAFTRDQLNKLEKEFNKENYISRARRVELATDLQLPENTIKVWFQNRRMKSKRRRLGFNRYYHPAYSGYY 923
+Q R RTAFTR+Q+ +LEKEF +ENY+SR RR ELA L LPE TIKVWFQNRRMK KR+RL + HPA +Y
Sbjct: 181 DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMT-WPHPADPAFY 256
The following BLAST results are available for this feature:
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