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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051988 ID=TCONS_00051988|Name=TCONS_00051988|organism=Clytia hemisphaerica|type=transcript|length=6913bpRun BLAST on NCBI protein sequence of TCONS_00051988-protein >TCONS_00051988-protein ID=TCONS_00051988-protein|Name=TCONS_00051988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1508bp MASKWGGGKQKIKDRDLDAEFEKFLNESLSDESLASPRRSLTSMTTKQKARun BLAST on NCBI transcript from alignment at scaffold_208:59689..74757- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051988 ID=TCONS_00051988|Name=TCONS_00051988|organism=Clytia hemisphaerica|type=transcript|length=15069bp|location=Sequence derived from alignment at scaffold_208:59689..74757- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_208:59689..74757- >TCONS_00051988 ID=TCONS_00051988|Name=TCONS_00051988|organism=Clytia hemisphaerica|type=CDS|length=99594bp|location=Sequence derived from alignment at scaffold_208:59689..74757- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00051988 vs. Swiss-Prot (Human)
Match: CE162 (Centrosomal protein of 162 kDa OS=Homo sapiens GN=CEP162 PE=1 SV=2) HSP 1 Score: 288.5 bits (737), Expect = 1.314e-78 Identity = 234/704 (33.24%), Postives = 395/704 (56.11%), Query Frame = 3
Query: 2586 GYQQENERLYKEAKDKTNDMKKIESKMFEENQKLASEVGNLKEELEKRPKLSSMSTSAS----------FGAAKITQLDNQVKFYKTREEEHKEHALGLDNEILLLKKKLHQSEQHRHNTLTEEGLLKQIEEMQILHKEETSKLHKKLKWYSENQQLLDRDMVVLKDKRDEIKELRELVDRLETEN------QRLR-KDKASNQSEKNSDSTTILDLKRQVKEMEDIIRRRHPNSIPALIYAASAIPGEKKVYESVEASKNVSAYLEKQIKTLEKELEDRDEINSRKVRAIEQQYNAMTLRYEDHIKQLEEKVQSVSVNNQTMKSVSELEVELSRQKSEYEDIINSLRERLKSVENKSKLEERASKTSSKSNNKQD------------------LARLKTKFISREAEIEELKSTLILLQREREDLLAREVESDERNLIRKTRSRLIDHST------------SPLVGAEAIERYH--DLEKENKRLRQKVEELYLDVKEKQIRQEAREAQILSEKRQFEEQFAERMRTDQLTHEREIEKLKMQYAIDHSNSKVAELNGKLKSCELMIQHLNQRVDDSKEDREKLSKCKLVEDNLRKDILQLQEELSEARKHFTPEMHHYKMLESKIANMESRHVYRENELQNVLEKTNARHSVDVTHIEDKWREVLREKDSELMKFREELDAILEVLRELKRQGIILPLSSSD 4550
GYQQENERLY + KD KK E +MF+ENQ L SEV +LKE++ K LS + + ++ Q + + + + AL +D E + KK+ Q++ E+ L +I+ ++ HK+E S+L K+L+WY+ENQ+LLD+D + L++ +EI++L+ +++L+ E+ Q++R KDKA+ D+ I DL+RQVKEME I++RR+PNS+PALI AASA ++V+ KN ++EK+IK LE +LE +DE + +R +EQQ+ M ++YE ++Q +E++ + +N + LE EL K ++ + +L + L+ + ++ K N+K D L RL + +++ EI++L T+ LQ++R +L+ + + K + + HS+ S L H ++ +EN RL+ ++E L + E +++ EA Q + R+ +E A + + + +H+REIEKL Q A+++S+SKVAELN K+ + E++I+H +V++ + +E L ++ E+ L+K+I +L EEL EA+++ TPEM H+ LE KI ME RH RE ELQ ++++T+ + +KW+ + + K+ EL KFR ELD+IL+VLREL RQG+++P++ +D
Sbjct: 719 GYQQENERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKM--KKERDQAKDQIAYVTGEK--LYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAA-------DAKKIQDLERQVKEMEGILKRRYPNSLPALILAASA------AGDTVD--KNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQ-QEQLLACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDV------LKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQESLVVSEVREEILQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQMEMRHAQREQELQQIIQQTHQVVETEQNKEVEKWKRLAQLKNRELEKFRTELDSILDVLRELHRQGVVVPVAFAD 1396 The following BLAST results are available for this feature:
BLAST of TCONS_00051988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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