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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051993 ID=TCONS_00051993|Name=TCONS_00051993|organism=Clytia hemisphaerica|type=transcript|length=2107bpRun BLAST on NCBI protein sequence of TCONS_00051993-protein >TCONS_00051993-protein ID=TCONS_00051993-protein|Name=TCONS_00051993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp SSVGIAESKCWCPRLSVVFNVLLSARITASFLSNISDCDETFNYWEPTHYRun BLAST on NCBI transcript from alignment at scaffold_208:74927..85453- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051993 ID=TCONS_00051993|Name=TCONS_00051993|organism=Clytia hemisphaerica|type=transcript|length=10527bp|location=Sequence derived from alignment at scaffold_208:74927..85453- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_208:74927..85453- >TCONS_00051993 ID=TCONS_00051993|Name=TCONS_00051993|organism=Clytia hemisphaerica|type=CDS|length=30726bp|location=Sequence derived from alignment at scaffold_208:74927..85453- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051993 vs. Swiss-Prot (Human)
Match: ALG9 (Alpha-1,2-mannosyltransferase ALG9 OS=Homo sapiens GN=ALG9 PE=1 SV=2) HSP 1 Score: 610.527 bits (1573), Expect = 0.000e+0 Identity = 290/565 (51.33%), Postives = 384/565 (67.96%), Query Frame = 1
Query: 10 GIAESKCWCPRLSVVFNVLLSARITASFLSNISDCDETFNYWEPTHYLMYGSGFQTWEYSPEYAIRSYAYLYFYTMPAKIIKNLFLANKITVFYYVRFILGIICAACETYFFNSLLNQFGKHVARMYFLFAIINTGMFISSTAFLPSSFAMYSGLLAFGGWFDRNNAVAIFGIAIGTLLGWPFFAILGVPIAFDIIFRQGNLWKFILWSGAIFLAIMIPMVSLDSHYYGKQVIAPLNIFLYNVFGQGGPDLYGVESWTFYFINGFLNFNVTFIMALLSLPICIICDYITQK-KIGPLNLPTWIVLSPIYIWGLVFFTRPHKEERFLFPIYPLVIFSAVFALSKIQELYHHLLSAKNKLQHYSDSSNWLAIFVFMVYTIFSLSRSSALYIGYHAPLDVYPELTNLVTPYDPDTKPMFHSEKKINVCVGREWYRFPSSFFLPENWELHFVKSQFAGQLPQPYQQGADATKIIPRNMNDMNREEFSRYINVEKCHLLIDLDLPTASEHEKNYSQIKNKWQIIYSKKFLDASRSHQLYRAFYVPFLSEKHCTFVDYNILRRINMTPKRK 1701
G + W P S F LLSAR+ A+ LSNISDCDETFNYWEPTHYL+YG GFQTWEYSP YAIRSYAYL + PA + NKI VFY++R +L + CE YF+ ++ +FG HV+RM F +++TGMF SS+AFLPSSF MY+ L+A GW+ ++A+ G+A G +LGWPF A LG+PIAFD++ + F WS + ++P+V +DS+YYGK VIAPLNI LYNVF GPDLYG E W FY INGFLNFNV F +ALL LP+ + +Y+ Q+ + L P W+ L+P+YIW ++FF +PHKEERFLFP+YPL+ ALS +Q+ YH + + +L+HY+ +SNWLA+ ++ + S SRS AL+ GYH PLD+YPE + T T P + +NVCVG+EWYRFPSSF LP+NW+L F+ S+F GQLP+P+ +G AT+I+P +MND N EE SRYI++ KCH L+DLD + E YS K +W + + FLDASRS +L RAFYVPFLS+++ +V+Y IL+ RK
Sbjct: 47 GNKAGQVWAPEGSTAFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGEGFQTWEYSPAYAIRSYAYLLLHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGLPIAFDLLVMKHRWKSFFHWSLMALILFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEPWYFYLINGFLNFNVAFALALLVLPLTSLMEYLLQRFHVQNLGHPYWLTLAPMYIWFIIFFIQPHKEERFLFPVYPLICLCGAVALSALQKCYHFVFQ-RYRLEHYTVTSNWLALGTVFLFGLLSFSRSVALFRGYHGPLDLYPEFYRIATDPTIHTVP---EGRPVNVCVGKEWYRFPSSFLLPDNWQLQFIPSEFRGQLPKPFAEGPLATRIVPTDMNDQNLEEPSRYIDISKCHYLVDLDTMRETPREPKYSSNKEEWISLAYRPFLDASRSSKLLRAFYVPFLSDQYTVYVNYTILKPRKAKQIRK 607 The following BLAST results are available for this feature:
BLAST of TCONS_00051993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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