TCONS_00051997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051997
Unique NameTCONS_00051997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051997 ID=TCONS_00051997|Name=TCONS_00051997|organism=Clytia hemisphaerica|type=transcript|length=512bp
CTCCACAAGCAACAGgtcaAGAACTGGTTCAACAATAAGAGGTTCAGAAA
TCCCTTACCAAAAccaaaagaataaataaaattattaGAATAGAATCGTG
AAAATCTTCTTCATCTCTCTCGAACATTATTATTCTTACACCCACCCGAC
GGATAAAATGTCCTAGGATCCCGCTAGATAATTCAAGACGATCGTCTTCA
AAATTTTCGACATTTTCGCGATTTCCACTTCTCTCTTGAATTATCGTCCA
CACGAGGATTTCCGTTTATATTGAGCGGATAGGATAGGATGTGCCGTATC
TCCAAAATAACCAGAATAGGTTTTGAATTTGTACCACAATCACTGACAGC
TTCTTGACTTTGACTTTGTGTCTACTCAATTCCTCCAGTCATATGAGTTG
GCCAGTGCAAAGATACATATATTTGCCATGCGAATTACATCACTGTCTGA
CTGGGAATCCTCATATTGAACGGCAAGATTAATTTCCACTGCACAATTAC
GGCGCCGGCGtt
Run BLAST on NCBI

transcript from alignment at scaffold_208:118330..119130-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051997 ID=TCONS_00051997|Name=TCONS_00051997|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at scaffold_208:118330..119130- (Clytia hemisphaerica)
CTCCACAAGCAACAGGTGAGCTTTCTACATTTGATAGATTCTGCAGGGGA
TACTTAGACAATAAAGGCCTAACGTTATGGTACCTTTTTCAGAATCCAAA
ATCTCTCTAAAGTTAAAAGGGTTAATCCACGAGCCCCCCCCCCCCAGCGG
TTGGCGTGGTGGCGTGAATTTTACGCTGGGGGGCCTCATCCACCCACCCA
AAATCAAGAATAGACGGTTTATCTTTCTCTAAGTAGTTGAAGTATCTTTT
GATTGTGATTGATACCCTCTCATCATTGTACATTTCCTATTCTTTTTTTT
TCAGGTCAAGAACTGGTTCAACAATAAGAGGTTCAGAAATCCCTTACCAA
AACCAAAAGAATAAATAAAATTATTAGAATAGAATCGTGAAAATCTTCTT
CATCTCTCTCGAACATTATTATTCTTACACCCACCCGACGGATAAAATGT
CCTAGGATCCCGCTAGATAATTCAAGACGATCGTCTTCAAAATTTTCGAC
ATTTTCGCGATTTCCACTTCTCTCTTGAATTATCGTCCACACGAGGATTT
CCGTTTATATTGAGCGGATAGGATAGGATGTGCCGTATCTCCAAAATAAC
CAGAATAGGTTTTGAATTTGTACCACAATCACTGACAGCTTCTTGACTTT
GACTTTGTGTCTACTCAATTCCTCCAGTCATATGAGTTGGCCAGTGCAAA
GATACATATATTTGCCATGCGAATTACATCACTGTCTGACTGGGAATCCT
CATATTGAACGGCAAGATTAATTTCCACTGCACAATTACGGCGCCGGCGT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032913XLOC_032913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051997-exon-scaffold_208-1575043694:119116..119130TCONS_00051997-exon-scaffold_208-1575043694:119116..119130Clytia hemisphaericaexon
TCONS_00051997-exon-scaffold_208-1575043694:118330..118826TCONS_00051997-exon-scaffold_208-1575043694:118330..118826Clytia hemisphaericaexon
TCONS_00051997-exon-scaffold_208-1510915933:119116..119130TCONS_00051997-exon-scaffold_208-1510915933:119116..119130Clytia hemisphaericaexon
TCONS_00051997-exon-scaffold_208-1510915933:118330..118826TCONS_00051997-exon-scaffold_208-1510915933:118330..118826Clytia hemisphaericaexon
TCONS_00051997-exon-scaffold_208-1491911889:119116..119130TCONS_00051997-exon-scaffold_208-1491911889:119116..119130Clytia hemisphaericaexon
TCONS_00051997-exon-scaffold_208-1491911889:118330..118826TCONS_00051997-exon-scaffold_208-1491911889:118330..118826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:118330..119130 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.39772	0.129702	0.1579	0	0	0.704647	0	0.122216	0.355878	0.467881	0.233615	0	0.132973	0.285401	0	0.270277	0.248935	0.130246	0	0	0.134251	0	0.125712	0	0.321102	0	0.259918	0.132407
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top