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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051998 ID=TCONS_00051998|Name=TCONS_00051998|organism=Clytia hemisphaerica|type=transcript|length=4999bp
TAAAAACCTAAGCAAACACTTGATTTTCTTTGATACCCTGAAGAAAAGGT
GTCTAGATTTAATATGTTATCAACTCTCACAGACTCTTTATCAAGTTGTG
GCTTACAAATAAAACCTTCCTGTTTTGCCATAGGGATTTCTTCTCAATGA
CAAAAACCTGAGAAAACTTATAATGAAGTATACATGTATTGTAACTGATT
GGaaaaataataatcaaaaaCCGCATAATAAATTACAAAATGATCAACTT
GATTTAGTGCATGCAAAACTTTGCCCTCACAGACTAAAATTAGAGGAATT
TAGGGAACTTTCAAATAGGCTTAAGAAGAAGAAACTTGTCTCGTTTTTCT
AGGTTTCTTCaatcaaatcataaaaaatataaacaaattcaATCAAACTC
AATGTACTGCAAGTTTAGaagtaatttttaaaacagtGAATttagataaa
aatagaaataaaaacaaatctcaACTTATCTCAAAGTTTCTTAGAACAAT
TTAACACTTGcgctttttcaaaatatctttctCTTTATCTGAGATAACTT
CAATCTGATCCTCATTAGGGTGGTTTTCTGTCATGTGGAGTTTTAAGTTG
TACGACCAAGTGTACATGTTGCACGAGGGGCAAGTGATGATACGATTTGT
ACATGGAGTTGTTTTGGTAGACTTATTGCCAACTCTTTTATACTTGTAAA
AGTAAAGACAATTAGATTGAGGACTGTAATATACATTGTTACCACTCTTT
GAAGATGATACCAAGGAAGGCTTGGACCCTTCTTTCCCACAAAACCCACA
TAATGATTGTGTTATTATTATTTCCTTATGAATGATATGTTTTCCGATAT
GAATTCTCATTTCTTTATGCTCTACGATTTTTGTGCAAATCTTGCACTTA
ACTTTCTTTGATGTGGCGTCGACTTCAGCAGAAGCAGAAGATGATGGAGC
GTTTTCTGGTTGGTTTGGGCTTAAAGTCAAATGGACACTAATGTCTTGGA
TTAGTTGTTTATCAAAATTGTAAATGGAGCAGCCTTTGGGGGGGATTCAA
TAAGATCTATGGTTTGATGGTCATGCAATTTTTCCTTTAACCAATAATGG
ATCTGAAACACACTTTCCGGTAGAATAAAGTCTTCCATCAACCTCTGTAA
TCTCTAATTCTCTAACCTGTACTTGAACAGAAATGTTATCCAGGTCCTTA
CACGAAATCAAAGTTTTAGCATGATCTCCATCTTTGATACCAACAACaac
agaaattttcatttgcttttttCCACCTCGGCAATGATAGGATCCCCTAC
AGATATTGTGTCATTCAGACTAACCTTTTCCTGAGAATCACTGGTAAACT
TGCTCAATCCTCTCACCTTTCTCAATCGATCTGCAGATAGGggcttttct
tttgaaatttgtttaagGACTGTTGCTTTATAGACATTCTTTCCACCAAC
TTCAAAATATGACAAAACATTTCTGTCACTGTCAATGACATCAAAAAGCT
CTACTCCGTCTACTTCCTCATTCTCTTGAACTAACTCGCAATCTGATGTT
GATACTTCTTCTTCCATCACTGACCAGTCTTCCTCCCTTTCACTGACACC
AATAACTCTAAAGAAAGGGCGCTTTAGAGTGACACCTTCAAGACTAAGAT
CAACAGGATTGAATTCAAATTCAGCTTTGACTGCTAAAGCTTGACCTTGT
AGAAGTCCAAACTTCTATGATGTTGTCAGATTGACACTAGAAACGACAAG
ATTGCCAGACCAGTCTTTGCAACTTGAGTGGTCCAATACAAGCCGGCGAG
ACAATCGACCTTTATGAACCCATTTGGGATGATTTGATAAAATCTCGTCG
CATAATGATATTGAAGAAGTTAAGTTTATGAGCTCGAATGCATCCAAGTT
TTTGTGGCCGAATGACATTCGACAGTTACCGAAAAATCTCTCCGCAGGAT
CTGTTCCATTTAATACTGTGTAGAAAGATTGCGTCGGTGCATGAATTTGT
AGTTTAGCAATACAAAAAATAGTATCTATAAATGTGCTTTGAAGATCGTG
GTAGAGTTGGTTTGGGATCTTAAATGCATCTTCCCTATTCAGAGCGAGAA
GGGAGGAAGCTCCTGTTGCAATGAATTGGACCTGAAgtaaaacaaagcaa
aacaagAAGATATTAATTTCCTTAGTAAGTATTGGGATGTTAGAAAATTT
GTTACAAGAGCAGATTATATTAATAATGCCAAAGTGACTATCTTTTGTTA
ATGGATAattaatttttactaaaaatcaTCTGCTCTCATACCTGCTCATA
CACAAATTTTGGACGTCCCTACCCTGCCTTCCTGAAAGAAACAACTATAT
GAAAATCATTAATGAGGTCCGcctttcaaaatgaaaaatgcaaatatcaa
aatcaaacaaggaaagaataaacatgcttttgaaaatttgctacCCCCTA
CTGAGAAAATGGATGATACGACTACCAAACCTGATTTGTGAGTGAATGCT
CTGCATATGAATATGAATACAAACAAATGATAGCTTCATAAACTGCGGCA
ACCAAGAcaagaacattttttatcaaagtCAATTTGAAAGGTATCTGCTC
CCTTTTTGGCGTCTTTGATTACTTCAATGAAGCTAAAGGCACATTCTGTT
TATCCCCTTGGATAAACAAGTGATTCCACTTCATGTGTACGAATATCTGC
AAGCTTCATTATGTCTCCCACGTCCTGTTTAGTTACTTGAATATTAGCAA
CCTCTAGCTTGCCACTTATTAATGAAGTCCAGCATCTTTTGGACAAATGC
TTGGCATCGTATTTAACTGTTTCGAGGTTGTTaccaatatttgtttcaat
caaTGGAAGGGCAGGATTTTCTTCCCAAGATCTGAGTTAGAATCCAGTTC
ATTTTGAGTGATAGCGTGCATGGCCTGTCTTCGAGTTGAATCACCGTCAG
TGTTAAAATTCAAAGGGTTTGcatctattttgtttttgatgctCTGGCTG
ATGTTGTTGACTGTTCCAATTCGTCTATGTCATCAGAAAATTAAGTCAGT
TATGTATTGTTGGATCAGCCTCAAAATTGCAGGGAATGAAGCAGTGACTG
ACAGTGGAAATGACCTAAATATCATATAGCTACAAACTTCACTTACCAGT
AACCAGACATTCTTTGGGAATATGGATCCCCCCTGCTGAAAGTTTTTCTT
GTAGGATTTCAGCATCTTCCATTGTGTTAAAATCTAGGCTTACATTGCCA
TGGTGTTCGTAGCAGGTACCAACAATCTTATTGGCTTTTGAATCGTATCG
AAACCGAGGATTGATAAATGTCTCATCTGATTTGATAGACAAACCAAATT
TTGAACTTTCATCTCCTTCAAACTTCATgttgaaattttcattgaaagaa
tCTTTGTATGACATATCCCGGAATAATTTCAAATGTGctccttaaaataa
aaaaaggtataaaaaaacaacaaactgTTATCGAGAGTAGATACAGGTAG
ATGGTAgatgtttataataaaaaacaatacaGTAATAAAAGAGCATTGTT
CAACTGAGTTCAATACAATATAACGCATTTAAAAGTATTTcttgtgtttg
ttttgaaataatgaTAAATGAAATACCTTTTTTACTCATTCTGTTAGCAA
GGGATGTACTTGGGAGGACATTTGCCCTGTACAAAATATCCAGTAGTAAT
GGGCCTCCAAACTTTAAAACCAAAAACGCCAGGTCTTTATCATCCTGGCT
TTATAAACACCTGCCACAGCATCTGTGCACTTGCCAAGAATATATTGGAT
ACTCTGATTGTTATTTAGGGCAACATTGACAAGAAAGTGCAGTCGTGGAA
CTTTATTTTCAGCAATATAGATAACAAAGCGTTTGTAAAAAGAAAGCGTT
TTACCAAGTTGCTCCACCTTGTTGTTAAGTTTGTAATTCTCAATAGAAAG
GAGAGAGTCTTACTTCTGATTTTTCTCGAACTTGTTTTTCAATTGATTGA
ATGTCAAACATTCATTTGGAATATGGGTTGAAGGATCATCGTTTTGAGAA
CGTGCTAGGATTCTTTTTAGAGATGAGTCTTTTCCTAACAGAGAACAGTC
TTTGTTTATTTCTCCATCAACATTGATGTCCATCACAAAGTCTTTCAGAC
TACATTGTTTggtatgaaatttttgttttgaaatcacaAAAGGCTGACTG
TCCAGTATTTGGTAGGGAAAGTCTTGAAGTATGTTAATCGGGGGATTTGG
GGAAAATCCAGAACAGTATTTCAGTTCAACACCAATTCTCATGTTTTTCG
AACCTGTACTTCTTCTACAATTTCTACATCATTGTCAAGCCTGTTCCTGT
CTGAATTGTTTTCTTCTCTTACTGATAGTGATTCTGTTAAGTTTGATTCA
GAGGAGGAGGTCTGAGAagtatttgtttttttctgatagtATGCTGTTAT
CGTCGATGTAGATTTCCTCTTGCCATTCTTCTTTCTACAAGCTTCAATAT
GCTTCTCCTTATTGTGTTTGTTAAGCTCTGAAAAGTCTTTGCTACAAAAG
GAACACTGATCtttttaattcatatttttttcactGAAAGAAACAAGGAA
ACTTTTCAAACCTTTGATATCTAAAACAGATATAAAGCTAATCAGACTGa
aacagctgaaaaataaagatctaTTGTGACTATTTAGCATTAATTCAGTA
ATATAACAGTATGGAAACAAATAGGCtcagaaattatctgctaaaataga
aatgtaaagttattctattataaattgatcaagccaagtttgcccaagat
cattcttccaaacttcttggaatgTATTGAAATCCTACCAGATCCCACTA
AAGTAAAATGAAGGTTTACcgagtcaatgtaaacattcaaacattcaaat
tcgaacattcgaacattcgaaTTCGAGCATTTGATAATCAAACTCAAACA
TTTAAAATCATTGTTTACATTTAATTGTTCAATTGTATTGATAATTTAT Run BLAST on NCBI transcript from alignment at scaffold_208:321294..326364- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051998 ID=TCONS_00051998|Name=TCONS_00051998|organism=Clytia hemisphaerica|type=transcript|length=5071bp|location=Sequence derived from alignment at scaffold_208:321294..326364- (Clytia hemisphaerica)
TAAAAACCTAAGCAAACACTTGATTTTCTTTGATACCCTGAAGAAAAGGT
GTCTAGATTTAATATGTTATCAACTCTCACAGACTCTTTATCAAGTTGTG
GCTTACAAATAAAACCTTCCTGTTTTGCCATAGGGATTTCTTCTCAATGA
CAAAAACCTGAGAAAACTTATAATGAAGTATACATGTATTGTAACTGATT
GGAAAAATAATAATCAAAAACCGCATAATAAATTACAAAATGATCAACTT
GATTTAGTGCATGCAAAACTTTGCCCTCACAGACTAAAATTAGAGGAATT
TAGGGAACTTTCAAATAGGCTTAAGAAGAAGAAACTTGTCTCGTTTTTCT
AGGTTTCTTCAATCAAATCATAAAAAATATAAACAAATTCAATCAAACTC
AATGTACTGCAAGTTTAGAAGTAATTTTTAAAACAGTGAATTTAGATAAA
AATAGAAATAAAAACAAATCTCAACTTATCTCAAAGTTTCTTAGAACAAT
TTAACACTTGCGCTTTTTCAAAATATCTTTCTCTTTATCTGAGATAACTT
CAATCTGATCCTCATTAGGGTGGTTTTCTGTCATGTGGAGTTTTAAGTTG
TACGACCAAGTGTACATGTTGCACGAGGGGCAAGTGATGATACGATTTGT
ACATGGAGTTGTTTTGGTAGACTTATTGCCAACTCTTTTATACTTGTAAA
AGTAAAGACAATTAGATTGAGGACTGTAATATACATTGTTACCACTCTTT
GAAGATGATACCAAGGAAGGCTTGCACCCTTCTTTCNATTGAGGACTGTG
ATATACATTGTTACCACTCTTTGAAGATGATACCAAGTGAGGCTTGGACC
CTTCTTTCCCACAAAACCCACATAATGATTGTGTTATTATTATTTCCTTA
TGAATGATATGTTTTCCGATATGAATTCTCATTTCTTTATGCTCTACGAT
TTTTGTGCAAATCTTGCACTTAACTTTCTTTGATGTGGCGTCGACTTCAG
CAGAAGCAGAAGATGATGGAGCGTTTTCTGGTTGGTTTGGGCTTAAAGTC
AAATGGACACTAATGTCTTGGATTAGTTGTTTATCAAAATTGTAAATGGA
GCAGCCTTTGGGGGGGATTCAATAAGATCTATGGTTTGATGGTCATGCAA
TTTTTCCTTTAACCAATAATGGATCTGAAACACACTTTCCGGTAGAATAA
AGTCTTCCATCAACCTCTGTAATCTCTAATTCTCTAACCTGTACTTGAAC
AGAAATGTTATCCAGGTCCTTACACGAAATCAAAGTTTTAGCATGATCTC
CATCTTTGATACCAACAACAACAGAAATTTTCATTTGCTTTTTTCCACCT
CGGCAATGATAGGATCCCCTACAGATATTGTGTCATTCAGACTAACCTTT
TCCTGAGAATCACTGGTAAACTTGCTCAATCCTCTCACCTTTCTCAATCG
ATCTGCAGATAGGGGCTTTTCTTTTGAAATTTGTTTAAGGACTGTTGCTT
TATAGACATTCTTTCCACCAACTTCAAAATATGACAAAACATTTCTGTCA
CTGTCAATGACATCAAAAAGCTCTACTCCGTCTACTTCCTCATTCTCTTG
AACTAACTCGCAATCTGATGTTGATACTTCTTCTTCCATCACTGACCAGT
CTTCCTCCCTTTCACTGACACCAATAACTCTAAAGAAAGGGCGCTTTAGA
GTGACACCTTCAAGACTAAGATCAACAGGATTGAATTCAAATTCAGCTTT
GACTGCTAAAGCTTGACCTTGTAGAAGTCCAAACTTCTATGATGTTGTCA
GATTGACACTAGAAACGACAAGATTGCCAGACCAGTCTTTGCAACTTGAG
TGGTCCAATACAAGCCGGCGAGACAATCGACCTTTATGAACCCATTTGGG
ATGATTTGATAAAATCTCGTCGCATAATGATATTGAAGAAGTTAAGTTTA
TGAGCTCGAATGCATCCAAGTTTTTGTGGCCGAATGACATTCGACAGTTA
CCGAAAAATCTCTCCGCAGGATCTGTTCCATTTAATACTGTGTAGAAAGA
TTGCGTCGGTGCATGAATTTGTAGTTTAGCAATACAAAAAATAGTATCTA
TAAATGTGCTTTGAAGATCGTGGTAGAGTTGGTTTGGGATCTTAAATGCA
TCTTCCCTATTCAGAGCGAGAAGGGAGGAAGCTCCTGTTGCAATGAATTG
GACCTGAAGTAAAACAAAGCAAAACAAGAAGATATTAATTTCCTTAGTAA
GTATTGGGATGTTAGAAAATTTGTTACAAGAGCAGATTATATTAATAATG
CCAAAGTGACTATCTTTTGTTAATGGATAATTAATTTTTACTAAAAATCA
TCTGCTCTCATACCTGCTCATACACAAATTTTGGACGTCCCTACCCTGCC
TTCCTGAAAGAAACAACTATATGAAAATCATTAATGAGGTCCGCCTTTCA
AAATGAAAAATGCAAATATCAAAATCAAACAAGGAAAGAATAAACATGCT
TTTGAAAATTTGCTACCCCCTACTGAGAAAATGGATGATACGACTACCAA
ACCTGATTTGTGAGTGAATGCTCTGCATATGAATATGAATACAAACAAAT
GATAGCTTCATAAACTGCGGCAACCAAGACAAGAACATTTTTTATCAAAG
TCAATTTGAAAGGTATCTGCTCCCTTTTTGGCGTCTTTGATTACTTCAAT
GAAGCTAAAGGCACATTCTGTTTATCCCCTTGGATAAACAAGTGATTCCA
CTTCATGTGTACGAATATCTGCAAGCTTCATTATGTCTCCCACGTCCTGT
TTAGTTACTTGAATATTAGCAACCTCTAGCTTGCCACTTATTAATGAAGT
CCAGCATCTTTTGGACAAATGCTTGGCATCGTATTTAACTGTTTCGAGGT
TGTTACCAATATTTGTTTCAATCAATGGAAGGGCAGGATTTTCTTCCCAA
GATCTGAGTTAGAATCCAGTTCATTTTGAGTGATAGCGTGCATGGCCTGT
CTTCGAGTTGAATCACCGTCAGTGTTAAAATTCAAAGGGTTTGCATCTAT
TTTGTTTTTGATGCTCTGGCTGATGTTGTTGACTGTTCCAATTCGTCTAT
GTCATCAGAAAATTAAGTCAGTTATGTATTGTTGGATCAGCCTCAAAATT
GCAGGGAATGAAGCAGTGACTGACAGTGGAAATGACCTAAATATCATATA
GCTACAAACTTCACTTACCAGTAACCAGACATTCTTTGGGAATATGGATC
CCCCCTGCTGAAAGTTTTTCTTGTAGGATTTCAGCATCTTCCATTGTGTT
AAAATCTAGGCTTACATTGCCATGGTGTTCGTAGCAGGTACCAACAATCT
TATTGGCTTTTGAATCGTATCGAAACCGAGGATTGATAAATGTCTCATCT
GATTTGATAGACAAACCAAATTTTGAACTTTCATCTCCTTCAAACTTCAT
GTTGAAATTTTCATTGAAAGAATCTTTGTATGACATATCCCGGAATAATT
TCAAATGTGCTCCTTAAAATAAAAAAAGGTATAAAAAAACAACAAACTGT
TATCGAGAGTAGATACAGGTAGATGGTAGATGTTTATAATAAAAAACAAT
ACAGTAATAAAAGAGCATTGTTCAACTGAGTTCAATACAATATAACGCAT
TTAAAAGTATTTCTTGTGTTTGTTTTGAAATAATGATAAATGAAATACCT
TTTTTACTCATTCTGTTAGCAAGGGATGTACTTGGGAGGACATTTGCCCT
GTACAAAATATCCAGTAGTAATGGGCCTCCAAACTTTAAAACCAAAAACG
CCAGGTCTTTATCATCCTGGCTTTATAAACACCTGCCACAGCATCTGTGC
ACTTGCCAAGAATATATTGGATACTCTGATTGTTATTTAGGGCAACATTG
ACAAGAAAGTGCAGTCGTGGAACTTTATTTTCAGCAATATAGATAACAAA
GCGTTTGTAAAAAGAAAGCGTTTTACCAAGTTGCTCCACCTTGTTGTTAA
GTTTGTAATTCTCAATAGAAAGGAGAGAGTCTTACTTCTGATTTTTCTCG
AACTTGTTTTTCAATTGATTGAATGTCAAACATTCATTTGGAATATGGGT
TGAAGGATCATCGTTTTGAGAACGTGCTAGGATTCTTTTTAGAGATGAGT
CTTTTCCTAACAGAGAACAGTCTTTGTTTATTTCTCCATCAACATTGATG
TCCATCACAAAGTCTTTCAGACTACATTGTTTGGTATGAAATTTTTGTTT
TGAAATCACAAAAGGCTGACTGTCCAGTATTTGGTAGGGAAAGTCTTGAA
GTATGTTAATCGGGGGATTTGGGGAAAATCCAGAACAGTATTTCAGTTCA
ACACCAATTCTCATGTTTTTCGAACCTGTACTTCTTCTACAATTTCTACA
TCATTGTCAAGCCTGTTCCTGTCTGAATTGTTTTCTTCTCTTACTGATAG
TGATTCTGTTAAGTTTGATTCAGAGGAGGAGGTCTGAGAAGTATTTGTTT
TTTTCTGATAGTATGCTGTTATCGTCGATGTAGATTTCCTCTTGCCATTC
TTCTTTCTACAAGCTTCAATATGCTTCTCCTTATTGTGTTTGTTAAGCTC
TGAAAAGTCTTTGCTACAAAAGGAACACTGATCTTTTTAATTCATATTTT
TTTCACTGAAAGAAACAAGGAAACTTTTCAAACCTTTGATATCTAAAACA
GATATAAAGCTAATCAGACTGAAACAGCTGAAAAATAAAGATCTATTGTG
ACTATTTAGCATTAATTCAGTAATATAACAGTATGGAAACAAATAGGCTC
AGAAATTATCTGCTAAAATAGAAATGTAAAGTTATTCTATTATAAATTGA
TCAAGCCAAGTTTGCCCAAGATCATTCTTCCAAACTTCTTGGAATGTATT
GAAATCCTACCAGATCCCACTAAAGTAAAATGAAGGTTTACCGAGTCAAT
GTAAACATTCAAACATTCAAATTCGAACATTCGAACATTCGAATTCGAGC
ATTTGATAATCAAACTCAAACATTTAAAATCATTGTTTACATTTAATTGT
TCAATTGTATTGATAATTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051998-exon-scaffold_208-1575043694:325596..326364 | TCONS_00051998-exon-scaffold_208-1575043694:325596..326364 | Clytia hemisphaerica | exon |
| TCONS_00051998-exon-scaffold_208-1575043694:321294..325523 | TCONS_00051998-exon-scaffold_208-1575043694:321294..325523 | Clytia hemisphaerica | exon |
| TCONS_00051998-exon-scaffold_208-1510915933:325596..326364 | TCONS_00051998-exon-scaffold_208-1510915933:325596..326364 | Clytia hemisphaerica | exon |
| TCONS_00051998-exon-scaffold_208-1510915933:321294..325523 | TCONS_00051998-exon-scaffold_208-1510915933:321294..325523 | Clytia hemisphaerica | exon |
| TCONS_00051998-exon-scaffold_208-1491911889:325596..326364 | TCONS_00051998-exon-scaffold_208-1491911889:325596..326364 | Clytia hemisphaerica | exon |
| TCONS_00051998-exon-scaffold_208-1491911889:321294..325523 | TCONS_00051998-exon-scaffold_208-1491911889:321294..325523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:321294..326364 - |
Blast
The following BLAST results are available for this feature:
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