TCONS_00052000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052000
Unique NameTCONS_00052000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052000 ID=TCONS_00052000|Name=TCONS_00052000|organism=Clytia hemisphaerica|type=transcript|length=259bp
TCCatgaaagaagaagaaacatAAAAGAAATGAGAAAATCAGGATCACAG
AATCAGGAGCAGCTGAACAAGTGCGCAGGCAGTTGGATATGAATGAGGAT
TAGAGAGAAAGTCAAAAAGATAAATTACCTCAAGCTACCAGTGCAAATAA
ACGAAAGACCTGCAGTCCACACGTGTCACCTGTCAAAAGAAAGTGCAGTC
AAAGAAAGCTTACtccaaaaaagccaaaaaaggtACAGTAAGCAGGAATA
GActttgtc
Run BLAST on NCBI

transcript from alignment at scaffold_208:398668..399337-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052000 ID=TCONS_00052000|Name=TCONS_00052000|organism=Clytia hemisphaerica|type=transcript|length=670bp|location=Sequence derived from alignment at scaffold_208:398668..399337- (Clytia hemisphaerica)
TCCATGAAAGAAGAAGAAACATAAAAGAAATGAGAAAATCAGGATCACAG
GTAAAGAATCTTTTGAAACTTTTTTTTCAATTATTATATTTTTGAGTCAG
TTTTTATTAGCACTTGTAACCCTTTCGTAGCAAATTCTCAAACTTCCTTA
GTATGAATTCCCATTTCAGTTTTCACAACATTTATTAGTATAAAATTCCA
AATCCCTAAAATTGAATTCAATGTTGTTTTTATTAAACTTAATAGAATCA
GGAGCAGCTGAACAAGTGCGCAGGCAGTTGGATATGAATGAGGATTAGAG
AGAAAGTCAAAAAGATAAATTACCTCAAGCTACCAGTGCAAATAAACGAA
AGGTAATAGAAATGTTTGGTTAATTTTTTGTTCATCTTCTAAATCCTCTC
CCTTGATCTACTAATTGTAGGGAGGAGCTTTTTGAGAAGGTAAAATGGCT
AATACAGATAATTGTGGTAATTATAATTTCTGTTTTCAAAAGTTGGTTGG
GAGTGGGATGTCAAATAAAAAGAATGAAATTTTGAAATTGAAAAACTTGT
TCCGTTACTTTTGTTTAGACCTGCAGTCCACACGTGTCACCTGTCAAAAG
AAAGTGCAGTCAAAGAAAGCTTACTCCAAAAAAGCCAAAAAAGGTACAGT
AAGCAGGAATAGACTTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032916XLOC_032916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052000-exon-scaffold_208-1575043694:399288..399337TCONS_00052000-exon-scaffold_208-1575043694:399288..399337Clytia hemisphaericaexon
TCONS_00052000-exon-scaffold_208-1575043694:398986..399092TCONS_00052000-exon-scaffold_208-1575043694:398986..399092Clytia hemisphaericaexon
TCONS_00052000-exon-scaffold_208-1575043694:398668..398769TCONS_00052000-exon-scaffold_208-1575043694:398668..398769Clytia hemisphaericaexon
TCONS_00052000-exon-scaffold_208-1510915933:399288..399337TCONS_00052000-exon-scaffold_208-1510915933:399288..399337Clytia hemisphaericaexon
TCONS_00052000-exon-scaffold_208-1510915933:398986..399092TCONS_00052000-exon-scaffold_208-1510915933:398986..399092Clytia hemisphaericaexon
TCONS_00052000-exon-scaffold_208-1510915933:398668..398769TCONS_00052000-exon-scaffold_208-1510915933:398668..398769Clytia hemisphaericaexon
TCONS_00052000-exon-scaffold_208-1491911889:399288..399337TCONS_00052000-exon-scaffold_208-1491911889:399288..399337Clytia hemisphaericaexon
TCONS_00052000-exon-scaffold_208-1491911889:398986..399092TCONS_00052000-exon-scaffold_208-1491911889:398986..399092Clytia hemisphaericaexon
TCONS_00052000-exon-scaffold_208-1491911889:398668..398769TCONS_00052000-exon-scaffold_208-1491911889:398668..398769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:398668..399337 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.47668	10.9545	1.42058	0.856933	0.80225	0	2.08717	2.02586	0	0	0	0	0.406166	0	0	0	0.741435	0.644441	0	0.764233	0.694799	0.802251	1.34929	0	2.20106	0	0.753738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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