TCONS_00052015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052015
Unique NameTCONS_00052015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052015 ID=TCONS_00052015|Name=TCONS_00052015|organism=Clytia hemisphaerica|type=transcript|length=494bp
TCAATCTAAAGTTTCTGAAAACGTTAATTTCTTCTCGTGAAGAGATAAAG
CTTCCATCTCTTGTTGACATCGGAACTTGTCCATTACATACAGTCAATAA
TTCTTTTCAAGTTGGGGCTAATAATGCAGAGTGGGActtaaaaaaaacac
taaaGGGGATCTGGCAACTCTTTCACGATTCTCCTGCACGTCGTGAGGAT
TACGAAAAAGAAACAGGGAGCACAGTTTACCCAAAAGCTTTCTGCTCAAC
TAGATGGACGGAGAACAAACCGACGGCAGAGAGGGCTATTTCTATCTGGC
CATATATTGAACAGATTGTTACTTACTGGGAAAAGAAACCACCAAATAAA
CGACCAAAATCTAAAAGTTATGCCAATGTAAAAACCGCTGTCAATGATCC
TCTTACAGTAgtaaagctgaaattttttgcTTACGTTGCTGGTATACTCG
AACCATTCTTAAAGATGTACCAAACTGACAAACCCATGATCCCT
Run BLAST on NCBI

protein sequence of TCONS_00052015-protein

>TCONS_00052015-protein ID=TCONS_00052015-protein|Name=TCONS_00052015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
NLKFLKTLISSREEIKLPSLVDIGTCPLHTVNNSFQVGANNAEWDLKKTL
KGIWQLFHDSPARREDYEKETGSTVYPKAFCSTRWTENKPTAERAISIWP
YIEQIVTYWEKKPPNKRPKSKSYANVKTAVNDPLTVVKLKFFAYVAGILE
PFLKMYQTDKPMIP
Run BLAST on NCBI

transcript from alignment at scaffold_208:192777..193270

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052015 ID=TCONS_00052015|Name=TCONS_00052015|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at scaffold_208:192777..193270 (Clytia hemisphaerica)
AGGGATCATGGGTTTGTCAGTTTGGTACATCTTTAAGAATGGTTCGAGTA
TACCAGCAACGTAAgcaaaaaatttcagctttacTACTGTAAGAGGATCA
TTGACAGCGGTTTTTACATTGGCATAACTTTTAGATTTTGGTCGTTTATT
TGGTGGTTTCTTTTCCCAGTAAGTAACAATCTGTTCAATATATGGCCAGA
TAGAAATAGCCCTCTCTGCCGTCGGTTTGTTCTCCGTCCATCTAGTTGAG
CAGAAAGCTTTTGGGTAAACTGTGCTCCCTGTTTCTTTTTCGTAATCCTC
ACGACGTGCAGGAGAATCGTGAAAGAGTTGCCAGATCCCCtttagtgttt
tttttaagTCCCACTCTGCATTATTAGCCCCAACTTGAAAAGAATTATTG
ACTGTATGTAATGGACAAGTTCCGATGTCAACAAGAGATGGAAGCTTTAT
CTCTTCACGAGAAGAAATTAACGTTTTCAGAAACTTTAGATTGA

Coding sequence (CDS) from alignment at scaffold_208:192777..193270

>TCONS_00052015 ID=TCONS_00052015|Name=TCONS_00052015|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_208:192777..193270 (Clytia hemisphaerica)
AGGGATCATGGGTTTGTCAGTTTGGTACATCTTTAAGAATGGTTCGAGTA
TACCAGCAACGTAAgcaaaaaatttcagctttacTACTGTAAGAGGATCA
TTGACAGCGGTTTTTACATTGGCATAACTTTTAGATTTTGGTCGTTTATT
TGGTGGTTTCTTTTCCCAGTAAGTAACAATCTGTTCAATATATGGCCAGA
TAGAAATAGCCCTCTCTGCCGTCGGTTTGTTCTCCGTCCATCTAGTTGAG
CAGAAAGCTTTTGGGTAAACTGTGCTCCCTGTTTCTTTTTCGTAATCCTC
ACGACGTGCAGGAGAATCGTGAAAGAGTTGCCAGATCCCCtttagtgttt
tttttaagTCCCACTCTGCATTATTAGCCCCAACTTGAAAAGAATTATTG
ACTGTATGTAATGGACAAGTTCCGATGTCAACAAGAGATGGAAGCTTTAT
CTCTTCACGAGAAGAAATTAACGTTTTCAGAAACTTTAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032931XLOC_032931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052015-exon-scaffold_208-1491911889:192777..193270TCONS_00052015-exon-scaffold_208-1491911889:192777..193270Clytia hemisphaericaexon
TCONS_00052015-exon-scaffold_208-1510915933:192777..193270TCONS_00052015-exon-scaffold_208-1510915933:192777..193270Clytia hemisphaericaexon
TCONS_00052015-exon-scaffold_208-1575043694:192777..193270TCONS_00052015-exon-scaffold_208-1575043694:192777..193270Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052015-proteinTCONS_00052015-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:192777..193270 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.497933	0.606954	0.704732	0.827364	2.35022	2.52045	0.320086	0.749151	0.314699	0.25987	0.630591	0.414526	0.41395	0	0.706857	0.606853	0.934491	0.478912	0.793971	1.52319	1.08322	0.528356	0.28546	0.129762	0.133652	0.238563	1.19484	0.182166	0.829001	0.70385
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top