TCONS_00052021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052021
Unique NameTCONS_00052021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052021 ID=TCONS_00052021|Name=TCONS_00052021|organism=Clytia hemisphaerica|type=transcript|length=373bp
AAAATAAGAACTATTTCTGGCTCAAATCTAAAAAAAGGACAGGGGGTTGG
GACTCTACAGCTGAAGTTTTGAGAACTGAATGCAAACATTTGTGgctaaa
aaaatcttgaaaaaaaattatttgtagTAGAAAATAATAGATTAGCTACC
TGTAACTTACGTCCTACTTGCATCATTTCCATTTAAATTTTGACCTTTCA
AATGCTATTTTTGCACTCAAAAGCCAGGATCTGCATAAAAACTTGATTGA
GTATTGAATAACATGAACGTCATGAAAGTCAAACCCTATCCCAAACAACC
AACTGCTGAGCACCGCTGTACGTTCCAGAGAGTTTCGTTGTTTCTCCAAT
CACGAATCAGCTTCAACTCATCC
Run BLAST on NCBI

transcript from alignment at scaffold_208:263060..263432

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052021 ID=TCONS_00052021|Name=TCONS_00052021|organism=Clytia hemisphaerica|type=transcript|length=373bp|location=Sequence derived from alignment at scaffold_208:263060..263432 (Clytia hemisphaerica)
GGATGAGTTGAAGCTGATTCGTGATTGGAGAAACAACGAAACTCTCTGGA
ACGTACAGCGGTGCTCAGCAGTTGGTTGTTTGGGATAGGGTTTGACTTTC
ATGACGTTCATGTTATTCAATACTCAATCAAGTTTTTATGCAGATCCTGG
CTTTTGAGTGCAAAAATAGCATTTGAAAGGTCAAAATTTAAATGGAAATG
ATGCAAGTAGGACGTAAGTTACAGGTAGCTAATCTATTATTTTCTActac
aaataattttttttcaagatttttttagcCACAAATGTTTGCATTCAGTT
CTCAAAACTTCAGCTGTAGAGTCCCAACCCCCTGTCCTTTTTTTAGATTT
GAGCCAGAAATAGTTCTTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032937XLOC_032937Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052021-exon-scaffold_208-1491911889:263060..263432TCONS_00052021-exon-scaffold_208-1491911889:263060..263432Clytia hemisphaericaexon
TCONS_00052021-exon-scaffold_208-1510915933:263060..263432TCONS_00052021-exon-scaffold_208-1510915933:263060..263432Clytia hemisphaericaexon
TCONS_00052021-exon-scaffold_208-1575043694:263060..263432TCONS_00052021-exon-scaffold_208-1575043694:263060..263432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:263060..263432 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216328	0.210954	0.244937	0	0	0.230529	0.83437	0.781127	0.182295	0.225802	0	0	0	0.44824	0	0.263648	0.162396	0.166451	0	0	0	0	0	0	0.232261	0.621863	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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