TCONS_00052026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052026
Unique NameTCONS_00052026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052026 ID=TCONS_00052026|Name=TCONS_00052026|organism=Clytia hemisphaerica|type=transcript|length=291bp
NNCCATTTATCAACCCAGCCAATCCAGGCTCAAAACATTGCCTCAATATC
CCAGACTATTCCGGAAATACCTTCAGTAACGCAAAACCCTGAAACTGTTT
ATCAAGATACCCATTTATCAATCCAGCCCATCCAAGCCCAAAGCATTGTT
TCGACATCCGAGACTAATCAGGGACCGTTTTCATTTTCGCGAAACCCGGG
AACCAACGATACCCATAAAGTCAAAAGGAAAAGAGCTGGTGCCCGTATTA
CTCAACCTTCTAAAGTGGTCAAAGAAATGCCAACAAAGATN
Run BLAST on NCBI

transcript from alignment at scaffold_208:283602..283892

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052026 ID=TCONS_00052026|Name=TCONS_00052026|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at scaffold_208:283602..283892 (Clytia hemisphaerica)
NATCTTTGTTGGCATTTCTTTGACCACTTTAGAAGGTTGAGTAATACGGG
CACCAGCTCTTTTCCTTTTGACTTTATGGGTATCGTTGGTTCCCGGGTTT
CGCGAAAATGAAAACGGTCCCTGATTAGTCTCGGATGTCGAAACAATGCT
TTGGGCTTGGATGGGCTGGATTGATAAATGGGTATCTTGATAAACAGTTT
CAGGGTTTTGCGTTACTGAAGGTATTTCCGGAATAGTCTGGGATATTGAG
GCAATGTTTTGAGCCTGGATTGGCTGGGTTGATAAATGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032942XLOC_032942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052026-exon-scaffold_208-1491911889:283602..283892TCONS_00052026-exon-scaffold_208-1491911889:283602..283892Clytia hemisphaericaexon
TCONS_00052026-exon-scaffold_208-1510915933:283602..283892TCONS_00052026-exon-scaffold_208-1510915933:283602..283892Clytia hemisphaericaexon
TCONS_00052026-exon-scaffold_208-1575043694:283602..283892TCONS_00052026-exon-scaffold_208-1575043694:283602..283892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:283602..283892 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.71309	2.25183	1.9044	0	1.16267	0	1.66266	1.03771	2.01211	3.38016	5.46448	3.92014	2.85605	4.94027	5.49489	4.61026	6.9001	7.12207	1.85426	3.9924	3.6202	1.97872	4.78855	3.19013	0	0	0.82581	1.03987	2.09077	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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