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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052028 ID=TCONS_00052028|Name=TCONS_00052028|organism=Clytia hemisphaerica|type=transcript|length=1234bp
GTGGAGGGCGTCAACTTTGGCACATAGCTCTGCATCGAACGTACGGAAGG
AAGGGACTGAATTGGTTGCGTTGTTTTGGTTGGCATTTTGAACATCTTCT
TTGCGAGCTTCGTTCCATCTTGCCAATCCAGCTAACAGATATGCTTGGAA
GTTCACCCCGTTTGCCGATGTACCTGGAATAAAATTGACAATGTGGCTGT
GAAAAGACTCAAGCGAAACTGTCCCTCTTGCACATCGATAGAGTGGAAGT
TGGATGTCACCTTTCTTTGTTGTGCCAATTTTGGTGTAGAGGTCAATGGA
AACAGGATCTTGGATACATGCGACGTGTCTACGTTCCACTTCCCAGATCT
CAACCATTTTGTCGGTGAAAAGTGGGGTCCCAAGAGAGTCCGTTGCACCG
GTAAAATGCAGAATCAGGTCGTCTATCAGCCTCTCTGTTTCGTACTCTCC
CCTTGTCATTCTTCTCACGTGACGTTGCATCTCTGCTTTGGTCAGGTATT
GCTTGACGGTTGCATCAGATGGTGTTTTGTTGCCTTCTTTCTTGAGGGCT
TGCCGTTTAGCTTCCATCAACTTCTTGTAATCATCCTCATTCCATTTGAA
TATGCACCCAGACAGAAGAGACATAAAGGTTTGGTACAGTGGATGAGATT
CAGAATGTACGCCACATACCAGCCTGTGCATAAAGTGCCAAATGGCGAGG
CGGACCAACAATTTCAGCCATTCCATAATCATTGCATCTCTTTCCTTGTC
TTCTTTGCTGTCACCTCCAGTCAAGAGATCTTCAATATCACTGAAAAGCT
CCTGCATTTTAGAATTGCCACTTGCATTGCAACAATCCCGATCGGTATAC
AATACTTTTGGGGGATGGGCGTTGGCAGTTGCATAACGGCCCATGATTCC
ATTGGCCATCGGTCTCAGACTGTCAATGGATTCTGAAGAGGTCAGCACAC
ACTGGAGGACTCCGCCATACTCATTACCAACATTTGTGCACCAATCAGCT
GTGTTCTTATCATAACCAGCCAGCTTCTTAAGGATCTTCTTGGTCGAATC
GATCTTGAGAACTTTTCCAAAGACAGAGGTGATGGAGCCTTTTAAGATGT
TGGAACGGTACATTACGTCACGAGCATACGTGGAAAGAAACCATTTCGGT
GTTGACACAGATTTTCTAGCTGGCAGTTCTTGAAAGTTGAGGTTCAAAGG
AGCAAACTTTGTATCTCTTTCCTTGTAGCGCTTG Run BLAST on NCBI protein sequence of TCONS_00052028-protein >TCONS_00052028-protein ID=TCONS_00052028-protein|Name=TCONS_00052028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
KRYKERDTKFAPLNLNFQELPARKSVSTPKWFLSTYARDVMYRSNILKGS
ITSVFGKVLKIDSTKKILKKLAGYDKNTADWCTNVGNEYGGVLQCVLTSS
ESIDSLRPMANGIMGRYATANAHPPKVLYTDRDCCNASGNSKMQELFSDI
EDLLTGGDSKEDKERDAMIMEWLKLLVRLAIWHFMHRLVCGVHSESHPLY
QTFMSLLSGCIFKWNEDDYKKLMEAKRQALKKEGNKTPSDATVKQYLTKA
EMQRHVRRMTRGEYETERLIDDLILHFTGATDSLGTPLFTDKMVEIWEVE
RRHVACIQDPVSIDLYTKIGTTKKGDIQLPLYRCARGTVSLESFHSHIVN
FIPGTSANGVNFQAYLLAGLARWNEARKEDVQNANQNNATNSVPSFRTFD
AELCAKVDALH Run BLAST on NCBI transcript from alignment at scaffold_208:304173..305406 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052028 ID=TCONS_00052028|Name=TCONS_00052028|organism=Clytia hemisphaerica|type=transcript|length=1234bp|location=Sequence derived from alignment at scaffold_208:304173..305406 (Clytia hemisphaerica)
CAAGCGCTACAAGGAAAGAGATACAAAGTTTGCTCCTTTGAACCTCAACT
TTCAAGAACTGCCAGCTAGAAAATCTGTGTCAACACCGAAATGGTTTCTT
TCCACGTATGCTCGTGACGTAATGTACCGTTCCAACATCTTAAAAGGCTC
CATCACCTCTGTCTTTGGAAAAGTTCTCAAGATCGATTCGACCAAGAAGA
TCCTTAAGAAGCTGGCTGGTTATGATAAGAACACAGCTGATTGGTGCACA
AATGTTGGTAATGAGTATGGCGGAGTCCTCCAGTGTGTGCTGACCTCTTC
AGAATCCATTGACAGTCTGAGACCGATGGCCAATGGAATCATGGGCCGTT
ATGCAACTGCCAACGCCCATCCCCCAAAAGTATTGTATACCGATCGGGAT
TGTTGCAATGCAAGTGGCAATTCTAAAATGCAGGAGCTTTTCAGTGATAT
TGAAGATCTCTTGACTGGAGGTGACAGCAAAGAAGACAAGGAAAGAGATG
CAATGATTATGGAATGGCTGAAATTGTTGGTCCGCCTCGCCATTTGGCAC
TTTATGCACAGGCTGGTATGTGGCGTACATTCTGAATCTCATCCACTGTA
CCAAACCTTTATGTCTCTTCTGTCTGGGTGCATATTCAAATGGAATGAGG
ATGATTACAAGAAGTTGATGGAAGCTAAACGGCAAGCCCTCAAGAAAGAA
GGCAACAAAACACCATCTGATGCAACCGTCAAGCAATACCTGACCAAAGC
AGAGATGCAACGTCACGTGAGAAGAATGACAAGGGGAGAGTACGAAACAG
AGAGGCTGATAGACGACCTGATTCTGCATTTTACCGGTGCAACGGACTCT
CTTGGGACCCCACTTTTCACCGACAAAATGGTTGAGATCTGGGAAGTGGA
ACGTAGACACGTCGCATGTATCCAAGATCCTGTTTCCATTGACCTCTACA
CCAAAATTGGCACAACAAAGAAAGGTGACATCCAACTTCCACTCTATCGA
TGTGCAAGAGGGACAGTTTCGCTTGAGTCTTTTCACAGCCACATTGTCAA
TTTTATTCCAGGTACATCGGCAAACGGGGTGAACTTCCAAGCATATCTGT
TAGCTGGATTGGCAAGATGGAACGAAGCTCGCAAAGAAGATGTTCAAAAT
GCCAACCAAAACAACGCAACCAATTCAGTCCCTTCCTTCCGTACGTTCGA
TGCAGAGCTATGTGCCAAAGTTGACGCCCTCCAC Coding sequence (CDS) from alignment at scaffold_208:304173..305406 >TCONS_00052028 ID=TCONS_00052028|Name=TCONS_00052028|organism=Clytia hemisphaerica|type=CDS|length=1233bp|location=Sequence derived from alignment at scaffold_208:304173..305406 (Clytia hemisphaerica)
AAGCGCTACAAGGAAAGAGATACAAAGTTTGCTCCTTTGAACCTCAACTT
TCAAGAACTGCCAGCTAGAAAATCTGTGTCAACACCGAAATGGTTTCTTT
CCACGTATGCTCGTGACGTAATGTACCGTTCCAACATCTTAAAAGGCTCC
ATCACCTCTGTCTTTGGAAAAGTTCTCAAGATCGATTCGACCAAGAAGAT
CCTTAAGAAGCTGGCTGGTTATGATAAGAACACAGCTGATTGGTGCACAA
ATGTTGGTAATGAGTATGGCGGAGTCCTCCAGTGTGTGCTGACCTCTTCA
GAATCCATTGACAGTCTGAGACCGATGGCCAATGGAATCATGGGCCGTTA
TGCAACTGCCAACGCCCATCCCCCAAAAGTATTGTATACCGATCGGGATT
GTTGCAATGCAAGTGGCAATTCTAAAATGCAGGAGCTTTTCAGTGATATT
GAAGATCTCTTGACTGGAGGTGACAGCAAAGAAGACAAGGAAAGAGATGC
AATGATTATGGAATGGCTGAAATTGTTGGTCCGCCTCGCCATTTGGCACT
TTATGCACAGGCTGGTATGTGGCGTACATTCTGAATCTCATCCACTGTAC
CAAACCTTTATGTCTCTTCTGTCTGGGTGCATATTCAAATGGAATGAGGA
TGATTACAAGAAGTTGATGGAAGCTAAACGGCAAGCCCTCAAGAAAGAAG
GCAACAAAACACCATCTGATGCAACCGTCAAGCAATACCTGACCAAAGCA
GAGATGCAACGTCACGTGAGAAGAATGACAAGGGGAGAGTACGAAACAGA
GAGGCTGATAGACGACCTGATTCTGCATTTTACCGGTGCAACGGACTCTC
TTGGGACCCCACTTTTCACCGACAAAATGGTTGAGATCTGGGAAGTGGAA
CGTAGACACGTCGCATGTATCCAAGATCCTGTTTCCATTGACCTCTACAC
CAAAATTGGCACAACAAAGAAAGGTGACATCCAACTTCCACTCTATCGAT
GTGCAAGAGGGACAGTTTCGCTTGAGTCTTTTCACAGCCACATTGTCAAT
TTTATTCCAGGTACATCGGCAAACGGGGTGAACTTCCAAGCATATCTGTT
AGCTGGATTGGCAAGATGGAACGAAGCTCGCAAAGAAGATGTTCAAAATG
CCAACCAAAACAACGCAACCAATTCAGTCCCTTCCTTCCGTACGTTCGAT
GCAGAGCTATGTGCCAAAGTTGACGCCCTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052028-exon-scaffold_208-1491911889:304173..305406 | TCONS_00052028-exon-scaffold_208-1491911889:304173..305406 | Clytia hemisphaerica | exon |
| TCONS_00052028-exon-scaffold_208-1510915933:304173..305406 | TCONS_00052028-exon-scaffold_208-1510915933:304173..305406 | Clytia hemisphaerica | exon |
| TCONS_00052028-exon-scaffold_208-1575043694:304173..305406 | TCONS_00052028-exon-scaffold_208-1575043694:304173..305406 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:304173..305406 . |
Blast
The following BLAST results are available for this feature:
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