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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052032 ID=TCONS_00052032|Name=TCONS_00052032|organism=Clytia hemisphaerica|type=transcript|length=841bp
GTGGTAAGTCTTTGACGTATTCGACAAAACCCATTTGCTGTAGCTTTTGT
TCTGATTGGATGACATCTAGTTTGTCTTGAGTATTGGCTGGTTGATTGAG
TTTTCGAAGCTGCTGGCGATAAACTTTCATAGCCTGGTCTTTGTTTGGAG
CAAGTTTGATTACTGGGTTCTCGATGAATGGAAGAGTGGCTGAAGTGGTT
GAAGTTTCTAGGTAGACAGAAACTGATGACTTGATGAGGCTCTGTTTAAT
CTCTTCTTTGATACTGGTTGCATGATTTGTTTCGTGGTTTTTACATGAAG
TACATATTCGACATGTTGGACATCTGTAGCTAATCTCGCTTCCAGTAGAT
TCGACTTCCTCGAAGACTCTTTGTAGCTTGGATAGATGTGATTGAGATGA
GCAGTCATGATCTTCACATTGAATGATTGATGATCGATCTTCCCCTCCAT
ATCCTAGAAGAGGAACGTTTGAGCTGGATTCTTGAAGTCGGTGGGTAAGG
AAGATGGTAGGGAAGTTCTTGTGTGTTTCGGTAAAGACATTATGTGGTCC
TCCAACGACACCACGTTCTGCGTTTGGACTGGCAAATGAAGATTCAAATA
GTGTGAGTCCAGATGGCAGTTGATGAATTGGTTTTGGTTGATACCTCATG
TATTTCACTCCGATCATGAGATGGATCTCCCCTCCCACACAGGACGGAAG
TTTTGGAAGGCTTTTGGTTCCACCAGATGACTTGTAGTGCTTGTGGATGT
CTTCTTCAACTTGCTTCAACTGATAGATGGGAAACTCTGATGTGATTTGC
TTGAGACAGATGCCTGAAAGTGTGGTGGTACGTCCATCGTG Run BLAST on NCBI protein sequence of TCONS_00052032-protein >TCONS_00052032-protein ID=TCONS_00052032-protein|Name=TCONS_00052032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
HDGRTTTLSGICLKQITSEFPIYQLKQVEEDIHKHYKSSGGTKSLPKLPS
CVGGEIHLMIGVKYMRYQPKPIHQLPSGLTLFESSFASPNAERGVVGGPH
NVFTETHKNFPTIFLTHRLQESSSNVPLLGYGGEDRSSIIQCEDHDCSSQ
SHLSKLQRVFEEVESTGSEISYRCPTCRICTSCKNHETNHATSIKEEIKQ
SLIKSSVSVYLETSTTSATLPFIENPVIKLAPNKDQAMKVYRQQLRKLNQ
PANTQDKLDVIQSEQKLQQMGFVEYVKDLP Run BLAST on NCBI transcript from alignment at scaffold_208:354434..355274 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052032 ID=TCONS_00052032|Name=TCONS_00052032|organism=Clytia hemisphaerica|type=transcript|length=841bp|location=Sequence derived from alignment at scaffold_208:354434..355274 (Clytia hemisphaerica)
CACGATGGACGTACCACCACACTTTCAGGCATCTGTCTCAAGCAAATCAC
ATCAGAGTTTCCCATCTATCAGTTGAAGCAAGTTGAAGAAGACATCCACA
AGCACTACAAGTCATCTGGTGGAACCAAAAGCCTTCCAAAACTTCCGTCC
TGTGTGGGAGGGGAGATCCATCTCATGATCGGAGTGAAATACATGAGGTA
TCAACCAAAACCAATTCATCAACTGCCATCTGGACTCACACTATTTGAAT
CTTCATTTGCCAGTCCAAACGCAGAACGTGGTGTCGTTGGAGGACCACAT
AATGTCTTTACCGAAACACACAAGAACTTCCCTACCATCTTCCTTACCCA
CCGACTTCAAGAATCCAGCTCAAACGTTCCTCTTCTAGGATATGGAGGGG
AAGATCGATCATCAATCATTCAATGTGAAGATCATGACTGCTCATCTCAA
TCACATCTATCCAAGCTACAAAGAGTCTTCGAGGAAGTCGAATCTACTGG
AAGCGAGATTAGCTACAGATGTCCAACATGTCGAATATGTACTTCATGTA
AAAACCACGAAACAAATCATGCAACCAGTATCAAAGAAGAGATTAAACAG
AGCCTCATCAAGTCATCAGTTTCTGTCTACCTAGAAACTTCAACCACTTC
AGCCACTCTTCCATTCATCGAGAACCCAGTAATCAAACTTGCTCCAAACA
AAGACCAGGCTATGAAAGTTTATCGCCAGCAGCTTCGAAAACTCAATCAA
CCAGCCAATACTCAAGACAAACTAGATGTCATCCAATCAGAACAAAAGCT
ACAGCAAATGGGTTTTGTCGAATACGTCAAAGACTTACCAC Coding sequence (CDS) from alignment at scaffold_208:354434..355274 >TCONS_00052032 ID=TCONS_00052032|Name=TCONS_00052032|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_208:354434..355274 (Clytia hemisphaerica)
CACGATGGACGTACCACCACACTTTCAGGCATCTGTCTCAAGCAAATCAC
ATCAGAGTTTCCCATCTATCAGTTGAAGCAAGTTGAAGAAGACATCCACA
AGCACTACAAGTCATCTGGTGGAACCAAAAGCCTTCCAAAACTTCCGTCC
TGTGTGGGAGGGGAGATCCATCTCATGATCGGAGTGAAATACATGAGGTA
TCAACCAAAACCAATTCATCAACTGCCATCTGGACTCACACTATTTGAAT
CTTCATTTGCCAGTCCAAACGCAGAACGTGGTGTCGTTGGAGGACCACAT
AATGTCTTTACCGAAACACACAAGAACTTCCCTACCATCTTCCTTACCCA
CCGACTTCAAGAATCCAGCTCAAACGTTCCTCTTCTAGGATATGGAGGGG
AAGATCGATCATCAATCATTCAATGTGAAGATCATGACTGCTCATCTCAA
TCACATCTATCCAAGCTACAAAGAGTCTTCGAGGAAGTCGAATCTACTGG
AAGCGAGATTAGCTACAGATGTCCAACATGTCGAATATGTACTTCATGTA
AAAACCACGAAACAAATCATGCAACCAGTATCAAAGAAGAGATTAAACAG
AGCCTCATCAAGTCATCAGTTTCTGTCTACCTAGAAACTTCAACCACTTC
AGCCACTCTTCCATTCATCGAGAACCCAGTAATCAAACTTGCTCCAAACA
AAGACCAGGCTATGAAAGTTTATCGCCAGCAGCTTCGAAAACTCAATCAA
CCAGCCAATACTCAAGACAAACTAGATGTCATCCAATCAGAACAAAAGCT
ACAGCAAATGGGTTTTGTCGAATACGTCAAAGACTTACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052032-exon-scaffold_208-1491911889:354434..355274 | TCONS_00052032-exon-scaffold_208-1491911889:354434..355274 | Clytia hemisphaerica | exon |
| TCONS_00052032-exon-scaffold_208-1510915933:354434..355274 | TCONS_00052032-exon-scaffold_208-1510915933:354434..355274 | Clytia hemisphaerica | exon |
| TCONS_00052032-exon-scaffold_208-1575043694:354434..355274 | TCONS_00052032-exon-scaffold_208-1575043694:354434..355274 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:354434..355274 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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