TCONS_00052034 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052034
Unique NameTCONS_00052034
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052034 ID=TCONS_00052034|Name=TCONS_00052034|organism=Clytia hemisphaerica|type=transcript|length=357bp
GTGTTGTTGTCGTGTGTCTCCTCTGCGAAATCCATTTCGTCGATTGATTG
TATCAGAACAAGGTTTCTGACTGAGCGGAACGTTTCACGACTTGACGATT
CATTGGCATTGGTGTACTTGACGCGTACTTTTCGAACAGTGCCATCTTTG
GAAGGTTCGATTTCAGTGATAATACCATACTGATATGTTGTTGAGATTGG
AGAGTCAGTTTTGGTGAAGAGTACGATATCTCCAACTTGAAGGTTCTTGT
CTCCTTTAAACCATTTTGGATGTTCCATTAATTTTGGTACATGATTGAGT
AGCCAATTCTCAAACCATGCATTGAAGATTTTTGTGTTTGCTTTTAACAG
CTTTTGT
Run BLAST on NCBI

protein sequence of TCONS_00052034-protein

>TCONS_00052034-protein ID=TCONS_00052034-protein|Name=TCONS_00052034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
QKLLKANTKIFNAWFENWLLNHVPKLMEHPKWFKGDKNLQVGDIVLFTKT
DSPISTTYQYGIITEIEPSKDGTVRKVRVKYTNANESSSRETFRSVRNLV
LIQSIDEMDFAEETHDNN
Run BLAST on NCBI

transcript from alignment at scaffold_208:358046..358402

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052034 ID=TCONS_00052034|Name=TCONS_00052034|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at scaffold_208:358046..358402 (Clytia hemisphaerica)
ACAAAAGCTGTTAAAAGCAAACACAAAAATCTTCAATGCATGGTTTGAGA
ATTGGCTACTCAATCATGTACCAAAATTAATGGAACATCCAAAATGGTTT
AAAGGAGACAAGAACCTTCAAGTTGGAGATATCGTACTCTTCACCAAAAC
TGACTCTCCAATCTCAACAACATATCAGTATGGTATTATCACTGAAATCG
AACCTTCCAAAGATGGCACTGTTCGAAAAGTACGCGTCAAGTACACCAAT
GCCAATGAATCGTCAAGTCGTGAAACGTTCCGCTCAGTCAGAAACCTTGT
TCTGATACAATCAATCGACGAAATGGATTTCGCAGAGGAGACACACGACA
ACAACAC

Coding sequence (CDS) from alignment at scaffold_208:358046..358402

>TCONS_00052034 ID=TCONS_00052034|Name=TCONS_00052034|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_208:358046..358402 (Clytia hemisphaerica)
CAAAAGCTGTTAAAAGCAAACACAAAAATCTTCAATGCATGGTTTGAGAA
TTGGCTACTCAATCATGTACCAAAATTAATGGAACATCCAAAATGGTTTA
AAGGAGACAAGAACCTTCAAGTTGGAGATATCGTACTCTTCACCAAAACT
GACTCTCCAATCTCAACAACATATCAGTATGGTATTATCACTGAAATCGA
ACCTTCCAAAGATGGCACTGTTCGAAAAGTACGCGTCAAGTACACCAATG
CCAATGAATCGTCAAGTCGTGAAACGTTCCGCTCAGTCAGAAACCTTGTT
CTGATACAATCAATCGACGAAATGGATTTCGCAGAGGAGACACACGACAA
CAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032950XLOC_032950Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052034-proteinTCONS_00052034-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052034-exon-scaffold_208-1491911889:358046..358402TCONS_00052034-exon-scaffold_208-1491911889:358046..358402Clytia hemisphaericaexon
TCONS_00052034-exon-scaffold_208-1510915933:358046..358402TCONS_00052034-exon-scaffold_208-1510915933:358046..358402Clytia hemisphaericaexon
TCONS_00052034-exon-scaffold_208-1575043694:358046..358402TCONS_00052034-exon-scaffold_208-1575043694:358046..358402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:358046..358402 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.72457	1.72648	1.79706	0	2.90941	0.255451	0.308191	0.577049	0.404005	0.750639	0	0.851256	1.59513	1.49009	0.272235	0.29215	0	0.922228	0.254822	1.59992	0.604552	0.339147	0.549704	0.24988	0.772112	0.77901	0.328696	0	0.798193	0.357651
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052034 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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