TCONS_00052036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052036
Unique NameTCONS_00052036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052036 ID=TCONS_00052036|Name=TCONS_00052036|organism=Clytia hemisphaerica|type=transcript|length=594bp
AGCAATACCATTTATGGAAGGAGAGATAATTTTCAAGGTTTAATGGTTTA
CACAATCGAAAAGGTTTTGGATCAAATCCTAAAGGCGAGTTAAAATTAGT
CCAAATGTTAGTTACAAAACAGCAATCTAATACacgataaataaaaaaat
ccataCTAATCTTTGAAAGCTACATTACTTAAGCTAGCAAGAATAGAATA
AATCTCTGGCCTCATGGTTGGGCTAGGAATAACcatctttgaagaaagtt
tgcTAAATTCACGGTTTTTCAAGAAGGTAACAAAGTATGATTCAAAAAGG
TGTCCAATAGAAAAAATGTCNTTGAAGAAAGTTTGCTAAATTCACGGTTT
TTCAAGAAGATAACAAAGTATGATTCAAAAAGGTGTCCAATAGAAAAAAT
GTCCGTTTTGATGGATTGTTTTGAATGAGGAATGTTACGCAGTTCGTGCG
CCAAGTGCTTATGGTTTTTGTTGTAAAGTTTTTGTCGTTCTGATCCAGGG
ACGATATTATATTTAATAGGCGCAGCTTGCAGGGTAACTTTACCGAAGTC
GATGATCTTTACAACTTTTCCATCTCGAATTAATACGTTATTTG
Run BLAST on NCBI

protein sequence of TCONS_00052036-protein

>TCONS_00052036-protein ID=TCONS_00052036-protein|Name=TCONS_00052036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
NNVLIRDGKVVKIIDFGKVTLQAAPIKYNIVPGSERQKLYNKNHKHLAHE
LRNIPHSKQSIKTDIFSIGHLFESYFVIFLKNREFSKLSSXTFFLLDTFL
NHTLLPS
Run BLAST on NCBI

transcript from alignment at scaffold_208:375390..375983

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052036 ID=TCONS_00052036|Name=TCONS_00052036|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at scaffold_208:375390..375983 (Clytia hemisphaerica)
CAAATAACGTATTAATTCGAGATGGAAAAGTTGTAAAGATCATCGACTTC
GGTAAAGTTACCCTGCAAGCTGCGCCTATTAAATATAATATCGTCCCTGG
ATCAGAACGACAAAAACTTTACAACAAAAACCATAAGCACTTGGCGCACG
AACTGCGTAACATTCCTCATTCAAAACAATCCATCAAAACGGACATTTTT
TCTATTGGACACCTTTTTGAATCATACTTTGTTATCTTCTTGAAAAACCG
TGAATTTAGCAAACTTTCTTCAANGACATTTTTTCTATTGGACACCTTTT
TGAATCATACTTTGTTACCTTCTTGAAAAACCGTGAATTTAgcaaacttt
cttcaaagatgGTTATTCCTAGCCCAACCATGAGGCCAGAGATTTATTCT
ATTCTTGCTAGCTTAAGTAATGTAGCTTTCAAAGATTAGtatggattttt
ttatttatcgtGTATTAGATTGCTGTTTTGTAACTAACATTTGGACTAAT
TTTAACTCGCCTTTAGGATTTGATCCAAAACCTTTTCGATTGTGTAAACC
ATTAAACCTTGAAAATTATCTCTCCTTCCATAAATGGTATTGCT

Coding sequence (CDS) from alignment at scaffold_208:375390..375983

>TCONS_00052036 ID=TCONS_00052036|Name=TCONS_00052036|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_208:375390..375983 (Clytia hemisphaerica)
AATAACGTATTAATTCGAGATGGAAAAGTTGTAAAGATCATCGACTTCGG
TAAAGTTACCCTGCAAGCTGCGCCTATTAAATATAATATCGTCCCTGGAT
CAGAACGACAAAAACTTTACAACAAAAACCATAAGCACTTGGCGCACGAA
CTGCGTAACATTCCTCATTCAAAACAATCCATCAAAACGGACATTTTTTC
TATTGGACACCTTTTTGAATCATACTTTGTTATCTTCTTGAAAAACCGTG
AATTTAGCAAACTTTCTTCAANGACATTTTTTCTATTGGACACCTTTTTG
AATCATACTTTGTTACCTTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032952XLOC_032952Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052036-proteinTCONS_00052036-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052036-exon-scaffold_208-1491911889:375390..375983TCONS_00052036-exon-scaffold_208-1491911889:375390..375983Clytia hemisphaericaexon
TCONS_00052036-exon-scaffold_208-1510915933:375390..375983TCONS_00052036-exon-scaffold_208-1510915933:375390..375983Clytia hemisphaericaexon
TCONS_00052036-exon-scaffold_208-1575043694:375390..375983TCONS_00052036-exon-scaffold_208-1575043694:375390..375983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:375390..375983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.09215	0	0	0	1.49123	0.687395	2.01405	1.10913	1.08714	0.384743	0.560162	0.675085	0.183858	0.318231	0.261629	0.224614	0	0	0	0	0	0.130373	0	0.0960579	0.395749	0.529795	0	0	0.102279	0.104206
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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